LOC110538019 (zn576)


Basic Information

Item Value
gene id LOC110538019
gene name zn576
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22794186 ~ 22803401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624549.2
TGCTTACATATTTACCATTATCATGGACATCCAGTCTCCCACGATGGACTCAGACATACTGAATATAGAGGAGATAGTGATGGGGAAGGGGCCACCAGATCCCCCTGCAGAACTGACCACTGAGAAACCAGCAGAACCCTACAAACCCATCTCCTTCAAAGCACCGCCTCCACCCACCATTCAACCATATCAGCATGAGAACCTGCAGTGTTTCCAGTGCTTCATCACCTTCTGTAACTCCAAAGCCAAGGAGAGGCACATGAAGAAGAGCCATCGTGAGGAGTACAAGcagcagctccagcagGGAGATACTCTGTTCACCTGCTATGTGTGTGACCGTACCTTTCCGTCCTCGGAGGAGCTGACCCAGCACCAGGGCTCACACAACAAGGAGGACAAGCCCTTCAAGTGTCCCCACTGCCAGGAGAGCTTCCGCACCTTCTCTGAGcTGACGACCCACAGGAGACAAGTTTGTCCAGAGAGGCAATTTGTGTGTAAGGACTGCAGTGAGACCTTCCGCAGCCCCGCCCTCCTTCGTACCCACCGCTTGGCCCAGCACCCCCGTCCAGAGGCAGAGGTGGATGAGCCAGATGACCCTACCAAGACCCACCGCTGTGGGAAGTGCAACCGGGGCTTCGAGACTGAGTCTGAGCTAATAATGCACCAGGAGAACCACGCCGGTGACCAGCACTGCAATGGCAGTGCTTCGCCTGCAAAGAAGCGCGGACGGCCCTTTAAAGCAGAGGACGCAACGGTCGGAGAGaagaaagggaagaggagaaagaaggaagagGGCACAGAGGAGGCGGAGACTGGAAACAATGCAGAGGAGGCTGCAGCAGCTCCGGCTGAGACCAAGgggaaagcagcagcagcaggaggtggCAGGCGAGGCCGTCCTAAAGCAGCAGCAGGCGAGGAGGCCAGAGAAGACGACAGTGAAGCCCCAGCAGAGGAGAAGAAACCCAAAGCGGCTCCCGCTCCACCCAAGCAACACCCCTGCCCTGAGTGTGAGCTCACGTTCCCTGCCCTGGCCCAGCTCCGCGCCCACAAGAAGGAAAAGCACACCCCACGTAAGGCCCATCCCTGCGAGGAGTGTGAGGAGAGCTTTGCCCGTCCCGAGCAGCTAGAAGCCCACAAGAACCGGGCACACACCAAGGGGCGTTACGCCTGCCCTACCTGTGGAAAGAGCTTTGGCCGAGAGAGCAACCTGAAGGGCCACCAGCAGAGCAGCCacccagaggaggaagaggaggagaagaagcaaGAGGCGGCGGGCCGCCGCAAGAGATAATTCAGAATGGGGAAGGGGGTTTTCTGTAAAGTGATTGGGAAGGGGGACGAAGTATCAGAGGGGTTTTAAAGAATTTGAATTTGGTCAGGGGTTTTTGTTTGAGGTTGGGCGTAAAATTTAGATCATAAGTTTGAGGTGTTTTTAGAATTTGAGGAATTTCTTGCAGGATTTTTAACAGGTGACCTGAGGTGTCCCACTGACTGTTCCGCATTTGTCATTTTTGGATTGTGTTAAGATGTTCAAGGCACACATCACACTTGGAGTGACTGACTTACTAACCAAAAGATGTTAGTCTTTGTTAAACCCATCTGTTTCTTTTCTGGACTAAGAACGACAGTAATTAGTTTTGGGGATTGTGTTTGTTCCCTCTGTTTTGATTATCTTTAAATGATGATCATGAGAATTGAGTTactgtttttacattatttttagAGGTGTATGTAAAATGGCTTTCATGCTGTCTGACATGGAGCTTTTCTTGTTTTATGATTTTTATATTGCTAATTACGTTTTCTGTAGTAGAAGATGAAATGCAACCACCGTGCATTTTATAAAACCTGTTGGCTATTTACTTTTTGAAAAATATTATTGTGATAAGTGAACCATGGATTGTAATGTTTGGGAGTTACATAAACGTCTCTTAGAAATTGCATCTATTTATATACGGTTTCTGGTTCATGTAGTGGTGCATTGTAATGCCAAACTTTCAATTATGATTAACTTCTAAATTGTACTGCTATTGTTAAATGCGCAGGGCATAAAAATTTTTAGGCCCAATGGTTCTTCTTTGATGTCATGCATGGATTTTAAAATAATGTCATCCTAAACAATGGTTGTAAAGAAGACTAATAGTCAATAACTCGAATTAGGATAATCCTGCTACCAGCTACACCTTGTCACCTATATTTCTGATTTGTTATACTTAATTTAAATGTCATAAATATTCTAATGAACTTTACATAAATTATTTGGTGTAAGTTTGGCATGATGACGAAATTACCAGAGGCCTGAATGGACGTTTTCTTGTTTTCATTGTTCTCCCCATGTAACATGCCTGGACACTCTGCCAATATGTAATAAAGGTGCCCCGAGGGCTGCTACAGAATGATA
>XM_021624558.2
ACGGCTTGTTCGCAATTCACGTTTAGCTGTAATGTTAGTTTGCTAGTATCGTTTAAGACTTATGCTTACATATTTACCATTATCATGGTGGGTCAGTTGGTTTCCGTGAACTAAACGTGTCCGTAAAATGCTAAGTTGTTATTTCTCCGTTTTGAATtgttagccagccagctaatgtagCTAGCTGGGTTATGTTATTCGAATTTGGTGTTAGCTCAGCAAACCATTGAGGTATAAGACTAAGGACATCCAGTCTCCCACGATGGACTCAGACATACTGAATATAGAGGAGATAGTGATGGGGAAGGGGCCACCAGATCCCCCTGCAGAACTGACCACTGAGAAACCAGCAGAACCCTACAAACCCATCTCCTTCAAAGCACCGCCTCCACCCACCATTCAACCATATCAGCATGAGAACCTGCAGTGTTTCCAGTGCTTCATCACCTTCTGTAACTCCAAAGCCAAGGAGAGGCACATGAAGAAGAGCCATCGTGAGGAGTACAAGcagcagctccagcagGGAGATACTCTGTTCACCTGCTATGTGTGTGACCGTACCTTTCCGTCCTCGGAGGAGCTGACCCAGCACCAGGGCTCACACAACAAGGAGGACAAGCCCTTCAAGTGTCCCCACTGCCAGGAGAGCTTCCGCACCTTCTCTGAGcTGACGACCCACAGGAGACAAGTTTGTCCAGAGAGGCAATTTGTGTGTAAGGACTGCAGTGAGACCTTCCGCAGCCCCGCCCTCCTTCGTACCCACCGCTTGGCCCAGCACCCCCGTCCAGAGGCAGAGGTGGATGAGCCAGATGACCCTACCAAGACCCACCGCTGTGGGAAGTGCAACCGGGGCTTCGAGACTGAGTCTGAGCTAATAATGCACCAGGAGAACCACGCCGGTGACCAGCACTGCAATGGCAGTGCTTCGCCTGCAAAGAAGCGCGGACGGCCCTTTAAAGCAGAGGACGCAACGGTCGGAGAGaagaaagggaagaggagaaagaaggaagagGGCACAGAGGAGGCGGAGACTGGAAACAATGCAGAGGAGGCTGCAGCAGCTCCGGCTGAGACCAAGgggaaagcagcagcagcaggaggtggCAGGCGAGGCCGTCCTAAAGCAGCAGCAGGCGAGGAGGCCAGAGAAGACGACAGTGAAGCCCCAGCAGAGGAGAAGAAACCCAAAGCGGCTCCCGCTCCACCCAAGCAACACCCCTGCCCTGAGTGTGAGCTCACGTTCCCTGCCCTGGCCCAGCTCCGCGCCCACAAGAAGGAAAAGCACACCCCACGTAAGGCCCATCCCTGCGAGGAGTGTGAGGAGAGCTTTGCCCGTCCCGAGCAGCTAGAAGCCCACAAGAACCGGGCACACACCAAGGGGCGTTACGCCTGCCCTACCTGTGGAAAGAGCTTTGGCCGAGAGAGCAACCTGAAGGGCCACCAGCAGAGCAGCCacccagaggaggaagaggaggagaagaagcaaGAGGCGGCGGGCCGCCGCAAGAGATAATTCAGAATGGGGAAGGGGGTTTTCTGTAAAGTGATTGGGAAGGGGGACGAAGTATCAGAGGGGTTTTAAAGAATTTGAATTTGGTCAGGGGTTTTTGTTTGAGGTTGGGCGTAAAATTTAGATCATAAGTTTGAGGTGTTTTTAGAATTTGAGGAATTTCTTGCAGGATTTTTAACAGGTGACCTGAGGTGTCCCACTGACTGTTCCGCATTTGTCATTTTTGGATTGTGTTAAGATGTTCAAGGCACACATCACACTTGGAGTGACTGACTTACTAACCAAAAGATGTTAGTCTTTGTTAAACCCATCTGTTTCTTTTCTGGACTAAGAACGACAGTAATTAGTTTTGGGGATTGTGTTTGTTCCCTCTGTTTTGATTATCTTTAAATGATGATCATGAGAATTGAGTTactgtttttacattatttttagAGGTGTATGTAAAATGGCTTTCATGCTGTCTGACATGGAGCTTTTCTTGTTTTATGATTTTTATATTGCTAATTACGTTTTCTGTAGTAGAAGATGAAATGCAACCACCGTGCATTTTATAAAACCTGTTGGCTATTTACTTTTTGAAAAATATTATTGTGATAAGTGAACCATGGATTGTAATGTTTGGGAGTTACATAAACGTCTCTTAGAAATTGCATCTATTTATATACGGTTTCTGGTTCATGTAGTGGTGCATTGTAATGCCAAACTTTCAATTATGATTAACTTCTAAATTGTACTGCTATTGTTAAATGCGCAGGGCATAAAAATTTTTAGGCCCAATGGTTCTTCTTTGATGTCATGCATGGATTTTAAAATAATGTCATCCTAAACAATGGTTGTAAAGAAGACTAATAGTCAATAACTCGAATTAGGATAATCCTGCTACCAGCTACACCTTGTCACCTATATTTCTGATTTGTTATACTTAATTTAAATGTCATAAATATTCTAATGAACTTTACATAAATTATTTGGTGTAAGTTTGGCATGATGACGAAATTACCAGAGGCCTGAATGGACGTTTTCTTGTTTTCATTGTTCTCCCCATGTAACATGCCTGGACACTCTGCCAATATGTAATAAAGGTGCCCCGAGGGCTGCTACAGAATGATA
>XM_021624567.2
TACATTTTTCACCGGAGTTATTCATCAAATCTTTAGCTACAAACAGCGAATTAATTAGATTATTTACCAAATCAACTGCACGCAAGCATAGACAAACACGTGTCTATGCATTTACTCAAATTAAGGATAAAAGAGCAGAGAAGCATTCAAAATGGaattgttttgttgaagaccAAAATATTGCCCTTGTCACGTGACAAGGGGCAATTCAATTTCCACATTCACTGTACTGGAAGCGGTTTGAGGACATCCAGTCTCCCACGATGGACTCAGACATACTGAATATAGAGGAGATAGTGATGGGGAAGGGGCCACCAGATCCCCCTGCAGAACTGACCACTGAGAAACCAGCAGAACCCTACAAACCCATCTCCTTCAAAGCACCGCCTCCACCCACCATTCAACCATATCAGCATGAGAACCTGCAGTGTTTCCAGTGCTTCATCACCTTCTGTAACTCCAAAGCCAAGGAGAGGCACATGAAGAAGAGCCATCGTGAGGAGTACAAGcagcagctccagcagGGAGATACTCTGTTCACCTGCTATGTGTGTGACCGTACCTTTCCGTCCTCGGAGGAGCTGACCCAGCACCAGGGCTCACACAACAAGGAGGACAAGCCCTTCAAGTGTCCCCACTGCCAGGAGAGCTTCCGCACCTTCTCTGAGcTGACGACCCACAGGAGACAAGTTTGTCCAGAGAGGCAATTTGTGTGTAAGGACTGCAGTGAGACCTTCCGCAGCCCCGCCCTCCTTCGTACCCACCGCTTGGCCCAGCACCCCCGTCCAGAGGCAGAGGTGGATGAGCCAGATGACCCTACCAAGACCCACCGCTGTGGGAAGTGCAACCGGGGCTTCGAGACTGAGTCTGAGCTAATAATGCACCAGGAGAACCACGCCGGTGACCAGCACTGCAATGGCAGTGCTTCGCCTGCAAAGAAGCGCGGACGGCCCTTTAAAGCAGAGGACGCAACGGTCGGAGAGaagaaagggaagaggagaaagaaggaagagGGCACAGAGGAGGCGGAGACTGGAAACAATGCAGAGGAGGCTGCAGCAGCTCCGGCTGAGACCAAGgggaaagcagcagcagcaggaggtggCAGGCGAGGCCGTCCTAAAGCAGCAGCAGGCGAGGAGGCCAGAGAAGACGACAGTGAAGCCCCAGCAGAGGAGAAGAAACCCAAAGCGGCTCCCGCTCCACCCAAGCAACACCCCTGCCCTGAGTGTGAGCTCACGTTCCCTGCCCTGGCCCAGCTCCGCGCCCACAAGAAGGAAAAGCACACCCCACGTAAGGCCCATCCCTGCGAGGAGTGTGAGGAGAGCTTTGCCCGTCCCGAGCAGCTAGAAGCCCACAAGAACCGGGCACACACCAAGGGGCGTTACGCCTGCCCTACCTGTGGAAAGAGCTTTGGCCGAGAGAGCAACCTGAAGGGCCACCAGCAGAGCAGCCacccagaggaggaagaggaggagaagaagcaaGAGGCGGCGGGCCGCCGCAAGAGATAATTCAGAATGGGGAAGGGGGTTTTCTGTAAAGTGATTGGGAAGGGGGACGAAGTATCAGAGGGGTTTTAAAGAATTTGAATTTGGTCAGGGGTTTTTGTTTGAGGTTGGGCGTAAAATTTAGATCATAAGTTTGAGGTGTTTTTAGAATTTGAGGAATTTCTTGCAGGATTTTTAACAGGTGACCTGAGGTGTCCCACTGACTGTTCCGCATTTGTCATTTTTGGATTGTGTTAAGATGTTCAAGGCACACATCACACTTGGAGTGACTGACTTACTAACCAAAAGATGTTAGTCTTTGTTAAACCCATCTGTTTCTTTTCTGGACTAAGAACGACAGTAATTAGTTTTGGGGATTGTGTTTGTTCCCTCTGTTTTGATTATCTTTAAATGATGATCATGAGAATTGAGTTactgtttttacattatttttagAGGTGTATGTAAAATGGCTTTCATGCTGTCTGACATGGAGCTTTTCTTGTTTTATGATTTTTATATTGCTAATTACGTTTTCTGTAGTAGAAGATGAAATGCAACCACCGTGCATTTTATAAAACCTGTTGGCTATTTACTTTTTGAAAAATATTATTGTGATAAGTGAACCATGGATTGTAATGTTTGGGAGTTACATAAACGTCTCTTAGAAATTGCATCTATTTATATACGGTTTCTGGTTCATGTAGTGGTGCATTGTAATGCCAAACTTTCAATTATGATTAACTTCTAAATTGTACTGCTATTGTTAAATGCGCAGGGCATAAAAATTTTTAGGCCCAATGGTTCTTCTTTGATGTCATGCATGGATTTTAAAATAATGTCATCCTAAACAATGGTTGTAAAGAAGACTAATAGTCAATAACTCGAATTAGGATAATCCTGCTACCAGCTACACCTTGTCACCTATATTTCTGATTTGTTATACTTAATTTAAATGTCATAAATATTCTAATGAACTTTACATAAATTATTTGGTGTAAGTTTGGCATGATGACGAAATTACCAGAGGCCTGAATGGACGTTTTCTTGTTTTCATTGTTCTCCCCATGTAACATGCCTGGACACTCTGCCAATATGTAATAAAGGTGCCCCGAGGGCTGCTACAGAATGATA

Function

NR:

description
zinc finger protein 572-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624549.2 False 2404 mRNA 0.47 5 22794186 22803083
XM_021624558.2 False 2623 mRNA 0.47 5 22794186 22803145
XM_021624567.2 True 2624 mRNA 0.47 5 22794186 22803401

Neighbor

gene id symbol gene type direction distance location
LOC118938460 LOC106605577 coding downstream 2350 22780044 ~ 22791836 (-)
si:ch211-79k12.2 LOC106605590 coding downstream 14476 22774508 ~ 22779710 (-)
LOC110534479 LOC106578237 coding downstream 19871 22755352 ~ 22774315 (-)
cadm4 LOC106577561 coding downstream 45048 22550928 ~ 22749138 (-)
rps19 LOC100689943 coding downstream 263130 22525184 ~ 22531056 (-)
LOC110538006 LOC106605591 coding upstream 46 22803447 ~ 22813135 (-)
LOC110538050 LOC106605593 coding upstream 19536 22822697 ~ 22838508 (-)
LOC118938551 LOC106605594 coding upstream 36587 22839988 ~ 22845481 (-)
LOC118936533 LOC106605595 coding upstream 44402 22847803 ~ 22850850 (-)
LOC110534486 NA coding upstream 49729 22853130 ~ 22853846 (-)
G123247 NA non-coding downstream 26413 22766253 ~ 22767773 (-)
G123158 NA non-coding downstream 133473 22636042 ~ 22660713 (-)
G123149 NA non-coding downstream 169917 22610750 ~ 22624269 (-)
G123267 NA non-coding upstream 13862 22817263 ~ 22817587 (-)
G123268 NA non-coding upstream 14665 22818066 ~ 22818280 (-)
G123241 NA non-coding upstream 17199 22820600 ~ 22821816 (-)
G123234 NA non-coding upstream 35370 22838771 ~ 22839536 (-)
G122972 NA other downstream 416026 22376153 ~ 22378160 (-)
LOC110537842 NA other downstream 636652 22120579 ~ 22157534 (-)
G122829 LOC106605673 other downstream 766469 22026299 ~ 22027717 (-)
G122761 LOC106578847 other downstream 938285 21851433 ~ 21856413 (-)
G122733 LOC106592382 other downstream 981754 21796507 ~ 21812432 (-)
G123308 NA other upstream 201585 23004986 ~ 23005812 (-)
G123435 NA other upstream 382239 23185640 ~ 23199252 (-)
LOC110538355 LOC106577931 other upstream 476778 23279116 ~ 23281851 (-)
G124840 NA other upstream 1100438 23903839 ~ 23904677 (-)
LOC110538705 LOC106577653 other upstream 1355766 24144519 ~ 24172836 (-)

Expression


Co-expression Network