LOC118936533 (LOC106605595)


Basic Information

Item Value
gene id LOC118936533
gene name LOC106605595
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22847803 ~ 22850850 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942747.1
CGTCAATATTCAGCGACGCTCTACGGTTTGTGTACAATTTCAAGCTTGATGGGAGGGTTACGTTTAGGACAACTGCATCAAATGtgcctttgttttgtcttataATCGTGAGAATTCCCTCGATCCTCTATTTACTCAAGTGTATCTGCACTTTTGCATATCTCTGTTGATGGGTACTTTCATATAGTTGTTTTTGCACTACTATAAAGGAATTTAAATTCTAGTTTTCAGAGAGAGTGCATGTCTCTCTTGGCCATATTTTACAGTTGATTAACGTCTGCTCCAGGACTTTAGCTGTAGGCTACCTGGTATGAATTAATAATATCGTATGCAAACGAATGCACATTATAGTGAATGTTGATCTCAGTACGTCCCTGCACATGATGCTCTCCTAGCGCCCCTATTTTTTTATGTGCCACTTAGTTGTATCCTGTGAACATATGCCTTATGCTGCCCTCACTGAAAGATTAGTTAGTTGTCAGGTAGATATTGCTCACGTCCCCAACAATGCTGTGGTACGGCCGGCCATCTGTCGCAGTGTGAATGGAACTGTCAGTTGGTCCATCTGTAAACCAGGCCTGACTCATGACTGAGTACTACGAGGAGGGGGGGCTGCTGTACGAGCACTCGCCTCCCATGCACATCAAAGTGGAGTCTCCGGAGGGACCCTTCGGAGGGGGCGTCTCAGAGGACGGCTTTCCCAGGGAGGATGAGGACTCGGAAGGCAGCTGTGACCAAAGCAGCGGGCTGCCTGGTGGACTCCCCTTCAACGTGGTGGTGGTGCATCCTAACATCATGACCCCTGGCATGTCCTCAGATGACCTCCTATCCATGGAACAGCACAGAGGTTTGTCCTCTGTGTTGGCAGCAGGGGGTGCAGGAAAGAGGAAGAGTCGTTTTAGCGGTGCAGAGCTGGAGGTGCTGGTTTCTGAGGTGACGCGGTGTGAGGGAGAGCTTTTTGGTCCTGCTGGGAGGCTCCggcgcagggagagagagaggatctggGCAGGGATCCTGGAGCGGGTCAACGCTGTGTCCAGAGTCCCTCGTACCCTCCGCGAGGTCAAAAAGCGCTGGGATGACCTGAAGAGACGCAATGGAGGCAGGCTGGCAGACGCTAGGCACCGCACTTGTTACCTGCCATCCAACAGAGGGGCTTCCATGCTGGGACGGTCAGCTCAGGCAAGCCCCAGGCTTCACCAGGCCAGACAGAAGCAAAGCACCAGAGGGAAGGCCAGTTTCACGTGCTTCACTGATACAGAACCAGTGGGTGGAGGTGAAGGGTTGGAGAGGGATGGCTTTGAGAAGGATGAGGATAGTGGTGAGCGGGAAGTGGAGGTGGGAGAGGCGGAATGCGAGGGGGCAGAGAGCAGTATGGAGGAAAAGCTGGGTttaggactgggactggggatAGGACCTCCCCCTAACTCGGAACGCtggctgcctccctctcccctctacagCGCCCCTTTCCTCAATGGGACCCCTCAGCCTAGTCCCCAGCCATCACTAGGGGCCCAGCAGGGACCATTGGAGGCCCCTCCTCGCGGCTTATGGCTGGAGGACGAGCTCCGCGGCGTGGGGGAGGCAGCTCTGCAGCTGGGGGATCGGGTGGAGCAGAGTCTTCGGGAGTTTGGGGAGGGATTCCGACGTGATATGAGAACATTAGTGGCCTCTCAAGAGGCACTGGCAACCAGCCTACAGCAAAACAATGTTCTCCTGCAAAGGCTGCTGGGAGTCCTAGAggcacagcagcagcagcaacaacaacaaccaccacagcAGCAGCCACATCATTCCCAAAAACAACAGCCACAACAGTCAATAATGCAGCAACCACAACAGTTACAGCAGCAGCAACCACAGCCTCAACAACCAATTCAGCAGCAGCCGCAACAACAACAGATACAGCAACCCCAACTggtgcagcagcagcaacaacaacagataCAACAGCAACAACTGTTACTACAGCAACCCCAACTGgtgcagcagcaacaacaacaaatacaacTGCTACCACAGCAACCACAGCAGCACCACCCCCAGAGTCCAAGTAATCAACCAACTTTAGCAGTTGCCCCTGTACCACCACCCCCAGATATTCTTGATGGTACCACCCGTCCAGATCCACCCGCAGTCATTAATGGAACCGTCCAACGGCCAAGGCGGGGGAGAATTGTTGACCATAGACGAAGAAGAAGGCGTTAGATAAAGATGAAAATAAGCTTTGATgtactttatttattttctctaatACAATCTGATTTGAAATAATTGTGTCCCTCTAATTTCAACCAAAGTCGAAAAAGTTGTTTCTTTAGCACATTTGTTATGTAGAGtgtgtaaagtattcagaccccctgactttttccacattttgtttagttacagccttgttctaaaatgtattcgattactgtttttcctcatcaatctacacacaataccccataatgacaaagcaa

Function

NR:

description
uncharacterized protein LOC110538195 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942747.1 True 2468 mRNA 0.51 4 22847803 22850850

Neighbor

gene id symbol gene type direction distance location
LOC118938551 LOC106605594 coding downstream 2322 22839988 ~ 22845481 (-)
LOC110538050 LOC106605593 coding downstream 9295 22822697 ~ 22838508 (-)
LOC110538006 LOC106605591 coding downstream 34668 22803447 ~ 22813135 (-)
LOC110538019 zn576 coding downstream 44402 22794186 ~ 22803401 (-)
LOC118938460 LOC106605577 coding downstream 55967 22780044 ~ 22791836 (-)
LOC110534486 NA coding upstream 2280 22853130 ~ 22853846 (-)
LOC110538076 LOC106578103 coding upstream 14092 22864942 ~ 22882936 (-)
im:7147486 LOC106605599 coding upstream 33128 22883978 ~ 22899520 (-)
LOC110538037 LOC106605599 coding upstream 56236 22907086 ~ 22949770 (-)
si:dkeyp-84f3.5 LOC106605600 coding upstream 102731 22953581 ~ 22965449 (-)
G123240 NA non-coding downstream 1340 22845750 ~ 22846463 (-)
G123234 NA non-coding downstream 8267 22838771 ~ 22839536 (-)
G123241 NA non-coding downstream 25987 22820600 ~ 22821816 (-)
G123268 NA non-coding downstream 29523 22818066 ~ 22818280 (-)
G123242 NA non-coding upstream 4039 22854889 ~ 22855131 (-)
G123277 LOC106605579 non-coding upstream 9375 22860225 ~ 22863254 (-)
G123281 NA non-coding upstream 25385 22876235 ~ 22877073 (-)
G123283 NA non-coding upstream 38882 22889732 ~ 22889979 (-)
G123296 NA non-coding upstream 67478 22918328 ~ 22918547 (-)
G122972 NA other downstream 469643 22376153 ~ 22378160 (-)
LOC110537842 NA other downstream 690269 22120579 ~ 22157534 (-)
G122829 LOC106605673 other downstream 820086 22026299 ~ 22027717 (-)
G122761 LOC106578847 other downstream 991902 21851433 ~ 21856413 (-)
G122733 LOC106592382 other downstream 1035371 21796507 ~ 21812432 (-)
G123308 NA other upstream 154136 23004986 ~ 23005812 (-)
G123435 NA other upstream 334790 23185640 ~ 23199252 (-)
LOC110538355 LOC106577931 other upstream 429329 23279116 ~ 23281851 (-)
G124840 NA other upstream 1052989 23903839 ~ 23904677 (-)
LOC110538705 LOC106577653 other upstream 1308317 24144519 ~ 24172836 (-)

Expression


Co-expression Network