Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110538298 |
| gene name | LOC106605596 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 22854739 ~ 22856678 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| C-type lectin domain family 4 member E-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021625029.2 | True | 1021 | mRNA | 0.46 | 2 | 22854739 | 22856678 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110537974 | LOC106605680 | coding | upstream | 310335 | 22496121 ~ 22544404 (+) |
| LOC118944072 | NA | coding | upstream | 462560 | 22390731 ~ 22392179 (+) |
| LOC110537956 | LOC106605684 | coding | upstream | 469982 | 22381333 ~ 22384757 (+) |
| apoc2 | LOC100135886 | coding | upstream | 476589 | 22376139 ~ 22378150 (+) |
| LOC110537948 | apoa2 | coding | upstream | 498672 | 22352969 ~ 22356067 (+) |
| LOC110538188 | LOC106578351 | coding | downstream | 137073 | 22993751 ~ 22997374 (+) |
| LOC110538306 | LOC106605606 | coding | downstream | 199103 | 23055781 ~ 23069547 (+) |
| kcnn4 | LOC106578046 | coding | downstream | 220668 | 23077346 ~ 23119231 (+) |
| LOC110538208 | smg9 | coding | downstream | 271558 | 23128236 ~ 23135855 (+) |
| LOC110538332 | LOC106605607 | coding | downstream | 291827 | 23148505 ~ 23151891 (+) |
| G122473 | NA | non-coding | upstream | 25267 | 22829263 ~ 22829472 (+) |
| G122469 | NA | non-coding | upstream | 30889 | 22823394 ~ 22823850 (+) |
| G122468 | NA | non-coding | upstream | 31462 | 22820526 ~ 22823277 (+) |
| G122467 | NA | non-coding | upstream | 35015 | 22819504 ~ 22819724 (+) |
| G122464 | NA | non-coding | upstream | 36742 | 22817785 ~ 22817997 (+) |
| G122478 | NA | non-coding | downstream | 2783 | 22859461 ~ 22859700 (+) |
| G122482 | NA | non-coding | downstream | 18931 | 22875609 ~ 22875839 (+) |
| G122483 | NA | non-coding | downstream | 19559 | 22876237 ~ 22876696 (+) |
| G122484 | NA | non-coding | downstream | 20305 | 22876983 ~ 22877222 (+) |
| G122486 | NA | non-coding | downstream | 26586 | 22883264 ~ 22883490 (+) |
| G122459 | LOC106578191 | other | upstream | 43476 | 22810767 ~ 22811263 (+) |
| apoc4 | NA | other | upstream | 504803 | 22348543 ~ 22349936 (+) |
| LOC110537939 | apoc1 | other | upstream | 508124 | 22342491 ~ 22346615 (+) |
| G122030 | NA | other | upstream | 835924 | 22015130 ~ 22018815 (+) |
| LOC110537735 | LOC106595974 | other | upstream | 1029645 | 21821165 ~ 21825285 (+) |
| G123980 | NA | other | downstream | 968015 | 23824693 ~ 23825502 (+) |
| LOC110538497 | LOC106605627 | other | downstream | 1005239 | 23861576 ~ 23881639 (+) |
| G124121 | LOC106605585 | other | downstream | 1290183 | 24146861 ~ 24148593 (+) |
| LOC110538915 | LOC106605649 | other | downstream | 1684326 | 24540963 ~ 24544247 (+) |
| G124451 | LOC106578403 | other | downstream | 2016373 | 24873051 ~ 24873834 (+) |
