im:7147486 (LOC106605599)


Basic Information

Item Value
gene id im:7147486
gene name LOC106605599
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22883978 ~ 22899520 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624738.2
TGGTGATGAAGACCACCTGGAACGCACCCATTTTTGCTACAGCTGTGCAGCAGCACACATCAACCGAATACACGACCTGAACAGCAGCGTGGCTGCAAATAATATTTCTAAAATATGCAAATTAATCGGTATTGAACGAAAGTAGCCGTGGATGATACAACATACTGTAATACATTAAATTACTGATGGAAACTGACAACCCAAGATCAGCCAGTTGAGGACACCTGAGCCCCCCTTTGTACTGTGACTGTCTTGTACCACAATGCTTGGCCTTCAGGGAAGCACCTCATCCCCTAAAATGTATCGCTGTGTGGCTTGTTCAGCCACCTTTACTGGATTGGCATCCTTGTTGGTGCACCAAGCTTCTCATGCAGTTCAATATGACAAGCAACCACCACAATCTGAGAAGCAACCTCTCTGCACTCACTGTGGTGAAGTGTTTTTAAACAAGGAGCTCCAAGACCAGCACTGCTGCAAAGCACTACCTGAGACCCTGGCTCCCTCTCTTTTTATCTGTGATTGTGGGGATGAGTTTCAGAACTTTAATGAAATGCTGGAGCATAAAAGATCTCATGTCTCAACCCCCCAGCAGCAGACCCAGACGACTGATGCCAGATATTCGGGCCAAGAAGAATGCAGTCTGGTTGAACCTGTCCAACCAGTCTCCCCTCAGCCAACCCTTAGTCAAACCATTTTGGGCCTCGgtcccccctctcatccctcacccCCATCTCCTGTCATTCGTAGTTCAATTCTCCCACAGCTTAATAGCACATCCACTGTTCCTGAAGTCTATACAAATAAGGGGTTTATTGCCCTAACCAGACCTCCAGAGCTGAACAACCTCCCTCCAGGTGCAAGTGAGCAGGAATTACAGCCTGATGGGCTTGACCAACCTGAGAACATCTCTACTGCACAGGAACCCTCGCCACAATCCATCCAGGATGAGACTCCTGAGGATGCAGACTGTCCCGTTACAAGCGGTGCATCTTCAGAAGATGCCGGCGCATCTAAGAATGAGACAATAATGAAGATGATAGCAAATGCCTACATGAAACGTTATCAACCTGCTCAACACTACCCATTAAGACACAAGAGACTTGTGGTCCCCAAAACAGAGCTTATACCAGTGGAGGTGATGTCACAATCCAAACACACAGCAGCATCCACACCAGGGCCCTCTATTGGCCAGTTAAGACACCTGCTTACAAAGTCTGGTGCAAAGACAATAGCCCGTCCATCTGGCAGTAGTGGTATCATATCTTTGACTCAAACCTTCTGCCCTGTAGTAGTTCTTGAGACCCGCCAAAAGCTTATTGATTCTAGAAATAGGGCCACACAGGGGAGATATCAATGTGGTCGCTGCCGAAGTGTTTTTCAGGACTTGGACAGCTTGACAGTGCATCATGCCTTACACAGGAAGGAGATAGTGAAGTGTTGTCGTCACTGTAAACAACTGATGATTGGAAAACCACCCCTTCCAGACAACCACATCTGTCCCCTGGCTCCCCACCACCTTACCTCAGTGGGGAGTAAATGCCACTCTATCAAAAAGACTGCATCATTCCAGAAGCAAAAGAAGCGACAACCGCAAAGAAGCTTCCAAAGTGTTAAAGCTAGGACGCCTTACTTTTGTCAAGTGTGCAAGCACAACTATGCCCGCAGGTATAATCTCAATGTGCACAAGTGTCAGGGGCCACCCCATCCTCCTCAGCATGCCTCCAACTCTGCCCTGTGCAAAAATACTGCATTTGGGGAAAACATTAAAGCAAGGGAGCCTGTCACAGGCGTCAACCAGAGGCCTCTAATCTCCAAAAACATTGGTGTGGGCACTGACAGCACTCGTCAGATAAAGGAGGAGGCGATTTCTGCAGAATCAAGGCCATATCCACAGTTTCCTGATTTGCTCTGGTCCGGTTCACCTAAAAGCTTCTCATCCTTCTATCCCGAAGTTGCCAAGCATGTAACACCAGGAGAAATTGATTCAGGATCTGCAACACTACAGCAAGGAGATGGTGAAGGGGACAACGCAGCAAGTAGTTTTAAACAAGAAGGTAAAGATGGAGAATGGACAATGCCTTTAGATGATTCTGAGATTGATGTTCTGATCGAGGCAGTAGATGCAGAAGACGACGATGATTTAATGCTACAAGAACCTATTTCTCAGGGTCATGTCAAGTCCACAAAGGATGGCGTACCTTATTTCATAAAAGATGGTGCTAGACGTTTTCCCTGCTATAGATGTCAGAAAACGTACAGTCGAGGGTGCACATTAAAAAAGCATCAAAGGCTGTGTGGAAATAGGTCATTTCTGCCACAATCTACTTTTCGGGCGGTAGCACAGAAAGTCAACAAGGGTCAATTCCAATTCGATTGCTCTGTCTGTGGGAGGAGCTTTAACCGCAAAGATAACATGCTGATTCATAGGAAGAAGTGCCAGTTAAGTAGAACCGTGGCCAAGAATGATAATGGACTTTTACAACAGGGCTTATCAGCAGCCCAGGCACCGCAACGTCTCGTGGCACAAAGTAGTAAAAATCTGGAGGATAATGGGGCAAATTGGGGTATTATGTCATTGCCCAATGTTCTTCCCAGGAGAGTGACGTGTGAGTGTGGGGCAGGCTTCACTTCCCCACGGCTCCTCCTGGAGCATTTGCAAAAGCATGCGCAGGAGGCCTATACCTGTCCCACATGCGGTGAGACACTGAGTTCCTGGGCAGACTATGAAGTCCACCTACAAGTACACATGCAGCCTCGGCACCAGATGTATGGGGGAATGCAACAGCAGCGCTCTCCACCTCTACTGCTGAGGTTTCCACAGCAGCCACGTCAACGTCGGCAGCCCCTGCCAAAGCAGCGACATGCGCCTCCGCAACACTCTCTGCCAGCACAGCGCCCTCAGCCAAATCAACAACCTCTGCGGAAGCCTAGGAAGCCACAGCCGCGCTGTGTGTGCATACGATGCAGCAACACCTTTTGCAGTCGCGGCGCGCTGCTAAAGCACCTCTCCTGGAATCGGTGTAAAGGTGACAGAGGAGCTATTTCAGCAAAGGCAAACCACTGTTCCCGATGCAGCATGGACTTCCCCAATGGCCTTAGCCTCAAGTTTCACCAGCTAAATGGAATGTGCAAGCCTGCCTTCAAGCCCATGCGTTGCCCTGTGTGCGTGCGCTGGTTTGGCACTGTGGAGGGACTCCAGAAACACCTGCAAACACACGACCAGACCAACTCGTTTCGCTGCCTCATCTGCCAGCGCCTCTATCCCAGCCTACGATCACTGAAAGACCACCGCAGAAAGGTCCATTGCATTTTGTCTGGAGACACAGCGCAGGTTACACAATGAGAGTGAATACTCTGAAAATCATAATCCAACAGAACATCTATGAACAAtgattttagcaaaaatgtttttgcAAGATCTGTTATTGATTTGAGGGATTAATTGTCTTGTGTCACCATATATAATCATTATTGTACTATTCTACTTTGATTCTATTTTCACTGTCTCAGTAGAATTTTTTTCTTGCTCACTTGAACCTATTTTCATGGCCATAGTTGTAAACTGTTGTATTGTGCTGTAAAATGCAATGATgttcttaaagggatactttgggattttggcaatgaagccctttatctacttctccACTAATGAAGGAAGTTCGATGGGGTTACCGTAGACTTCGTcatgcgctaatgctagttaccaacttccttcaaactgcatgcagaggTATAAAAATGGTATTGACATGTTAATCGGACTGACTCTGGGAAATAAATtgaagggcttcattgccaaaatcctgaagtatccctttaactccTCAGCCATTATTAAAATGTACCACTTATTGTTCAAGTGCTCTTTTAGGTTGTGAAAAAACATTGATGGTTATATCTTAGTGTGGTAGCTGTCAGTGCATTTGGGAGAAAACAATTTGTAAGTGAATATACACTACAAAGTATGTgcacacctgctcgtcgaactcCTCATTCCCAACCATGGGCATTAATTGTTtggtcccccccctttgctgctataacagaatccactcttctgggaaggctttcatgtagatgttggaacgttgctgaggggacttgctttcattcagccacgagcattggtgaggtcgggcactgatgttgggtgataaggcctggctcgcagtcggcgttcccaTTTATCCCGAAGGtggtcgatggggttgaggtcagggctctgtgcagtcaagttcttctacaccgatgtcgacaaaccatttctgtatggacctcgctttgtgcacattggaattgttatgctgaaacaggaaagggccttccccaagctGTTGCGACAAAGttaaagcacagaatcgtctagaacgtCTTTGTATGCTGTAAAGTTACAATTTCCCGTCACTGGATCTAAGGGGCCTAAccccaaccatgaaaaacagccccagaccattattcctcctccaccaaactttacagttggcactatgcattggggcacgTAGCAAACCCCCGATTTGTCTTTTGGactggtgatcttaggcttatgtgcggctgctcggccatggaaacccatttcatgaagctcccgactaacctttcttgtgctgatgttgttccaaactgcctctagaagcttggtagtgagtgttgcaacccgaggatagacaatttttacgcgcttcagcactcggtggtagCGTTCTGTGAGCTagatgttttcacttcacaataaaagcacttacagttgaccagggcggCTCTAAcggcagacatttgacgaactgacttgttggaaaggtggcatcttatgacggtactactttgaaagtcactgagctgttcagtaaggccattctactgtcagtgtttgtctatggagattgcatggctgtgtgcttggtttTATGCGCTTGTCAGcagcgggtgtggctgaaatagccgaatccattaatttgaagggctgtccacatacttgtgtgtatatattttaaCACTTACACCAAAACAAATGTATAGGAAATAGCATGTAGTGTGTTGCTCCTTGTTTTAATAAAGCCCCATTCAGAGATGAAAGATTTGAGTTGATTGTTGTCACTAACCAGGTATCCAACCATTTTATGTGTATGAATTACCTGATGCAGAAATATActcatgacaggcctgatggaaacagcaaatGTATTGGTAAAATGTCAAAATGTCGATTAAAATAAAATATGCTACACAAGTTAA
>XM_021624747.2
TGGTGATGAAGACCACCTGGAACGCACCCATTTTTGCTACAGCTGTGCAGCAGCACACATCAACCGAATACACGACCTGAACAGCAGCGTGGCTGCAAATAATATTTCTAAAATATGCAAATTAATCGGTATTGAACGAAAGTAGCCGTGGATGATACAACATACTGTAATACATTAAATTACTGATGagtgtatccgttgttttcagtgccatgatgtccttgaggagcagattcaatccATGAGCATCGCAGCCAATTGGTATGATGTgggggtaggactcctccactttagaccaagcagccttcatgtttgctgcattgtctgtcaccagtgcagaCACTCACCTTCTGTCATCCAAGGAAACTGACAACCCAAGATCAGCCAGTTGAGGACACCTGAGCCCCCCTTTGTACTGTGACTGTCTTGTACCACAATGCTTGGCCTTCAGGGAAGCACCTCATCCCCTAAAATGTATCGCTGTGTGGCTTGTTCAGCCACCTTTACTGGATTGGCATCCTTGTTGGTGCACCAAGCTTCTCATGCAGTTCAATATGACAAGCAACCACCACAATCTGAGAAGCAACCTCTCTGCACTCACTGTGGTGAAGTGTTTTTAAACAAGGAGCTCCAAGACCAGCACTGCTGCAAAGCACTACCTGAGACCCTGGCTCCCTCTCTTTTTATCTGTGATTGTGGGGATGAGTTTCAGAACTTTAATGAAATGCTGGAGCATAAAAGATCTCATGTCTCAACCCCCCAGCAGCAGACCCAGACGACTGATGCCAGATATTCGGGCCAAGAAGAATGCAGTCTGGTTGAACCTGTCCAACCAGTCTCCCCTCAGCCAACCCTTAGTCAAACCATTTTGGGCCTCGgtcccccctctcatccctcacccCCATCTCCTGTCATTCGTAGTTCAATTCTCCCACAGCTTAATAGCACATCCACTGTTCCTGAAGTCTATACAAATAAGGGGTTTATTGCCCTAACCAGACCTCCAGAGCTGAACAACCTCCCTCCAGGTGCAAGTGAGCAGGAATTACAGCCTGATGGGCTTGACCAACCTGAGAACATCTCTACTGCACAGGAACCCTCGCCACAATCCATCCAGGATGAGACTCCTGAGGATGCAGACTGTCCCGTTACAAGCGGTGCATCTTCAGAAGATGCCGGCGCATCTAAGAATGAGACAATAATGAAGATGATAGCAAATGCCTACATGAAACGTTATCAACCTGCTCAACACTACCCATTAAGACACAAGAGACTTGTGGTCCCCAAAACAGAGCTTATACCAGTGGAGGTGATGTCACAATCCAAACACACAGCAGCATCCACACCAGGGCCCTCTATTGGCCAGTTAAGACACCTGCTTACAAAGTCTGGTGCAAAGACAATAGCCCGTCCATCTGGCAGTAGTGGTATCATATCTTTGACTCAAACCTTCTGCCCTGTAGTAGTTCTTGAGACCCGCCAAAAGCTTATTGATTCTAGAAATAGGGCCACACAGGGGAGATATCAATGTGGTCGCTGCCGAAGTGTTTTTCAGGACTTGGACAGCTTGACAGTGCATCATGCCTTACACAGGAAGGAGATAGTGAAGTGTTGTCGTCACTGTAAACAACTGATGATTGGAAAACCACCCCTTCCAGACAACCACATCTGTCCCCTGGCTCCCCACCACCTTACCTCAGTGGGGAGTAAATGCCACTCTATCAAAAAGACTGCATCATTCCAGAAGCAAAAGAAGCGACAACCGCAAAGAAGCTTCCAAAGTGTTAAAGCTAGGACGCCTTACTTTTGTCAAGTGTGCAAGCACAACTATGCCCGCAGGTATAATCTCAATGTGCACAAGTGTCAGGGGCCACCCCATCCTCCTCAGCATGCCTCCAACTCTGCCCTGTGCAAAAATACTGCATTTGGGGAAAACATTAAAGCAAGGGAGCCTGTCACAGGCGTCAACCAGAGGCCTCTAATCTCCAAAAACATTGGTGTGGGCACTGACAGCACTCGTCAGATAAAGGAGGAGGCGATTTCTGCAGAATCAAGGCCATATCCACAGTTTCCTGATTTGCTCTGGTCCGGTTCACCTAAAAGCTTCTCATCCTTCTATCCCGAAGTTGCCAAGCATGTAACACCAGGAGAAATTGATTCAGGATCTGCAACACTACAGCAAGGAGATGGTGAAGGGGACAACGCAGCAAGTAGTTTTAAACAAGAAGGTAAAGATGGAGAATGGACAATGCCTTTAGATGATTCTGAGATTGATGTTCTGATCGAGGCAGTAGATGCAGAAGACGACGATGATTTAATGCTACAAGAACCTATTTCTCAGGGTCATGTCAAGTCCACAAAGGATGGCGTACCTTATTTCATAAAAGATGGTGCTAGACGTTTTCCCTGCTATAGATGTCAGAAAACGTACAGTCGAGGGTGCACATTAAAAAAGCATCAAAGGCTGTGTGGAAATAGGTCATTTCTGCCACAATCTACTTTTCGGGCGGTAGCACAGAAAGTCAACAAGGGTCAATTCCAATTCGATTGCTCTGTCTGTGGGAGGAGCTTTAACCGCAAAGATAACATGCTGATTCATAGGAAGAAGTGCCAGTTAAGTAGAACCGTGGCCAAGAATGATAATGGACTTTTACAACAGGGCTTATCAGCAGCCCAGGCACCGCAACGTCTCGTGGCACAAAGTAGTAAAAATCTGGAGGATAATGGGGCAAATTGGGGTATTATGTCATTGCCCAATGTTCTTCCCAGGAGAGTGACGTGTGAGTGTGGGGCAGGCTTCACTTCCCCACGGCTCCTCCTGGAGCATTTGCAAAAGCATGCGCAGGAGGCCTATACCTGTCCCACATGCGGTGAGACACTGAGTTCCTGGGCAGACTATGAAGTCCACCTACAAGTACACATGCAGCCTCGGCACCAGATGTATGGGGGAATGCAACAGCAGCGCTCTCCACCTCTACTGCTGAGGTTTCCACAGCAGCCACGTCAACGTCGGCAGCCCCTGCCAAAGCAGCGACATGCGCCTCCGCAACACTCTCTGCCAGCACAGCGCCCTCAGCCAAATCAACAACCTCTGCGGAAGCCTAGGAAGCCACAGCCGCGCTGTGTGTGCATACGATGCAGCAACACCTTTTGCAGTCGCGGCGCGCTGCTAAAGCACCTCTCCTGGAATCGGTGTAAAGGTGACAGAGGAGCTATTTCAGCAAAGGCAAACCACTGTTCCCGATGCAGCATGGACTTCCCCAATGGCCTTAGCCTCAAGTTTCACCAGCTAAATGGAATGTGCAAGCCTGCCTTCAAGCCCATGCGTTGCCCTGTGTGCGTGCGCTGGTTTGGCACTGTGGAGGGACTCCAGAAACACCTGCAAACACACGACCAGACCAACTCGTTTCGCTGCCTCATCTGCCAGCGCCTCTATCCCAGCCTACGATCACTGAAAGACCACCGCAGAAAGGTCCATTGCATTTTGTCTGGAGACACAGCGCAGGTTACACAATGAGAGTGAATACTCTGAAAATCATAATCCAACAGAACATCTATGAACAAtgattttagcaaaaatgtttttgcAAGATCTGTTATTGATTTGAGGGATTAATTGTCTTGTGTCACCATATATAATCATTATTGTACTATTCTACTTTGATTCTATTTTCACTGTCTCAGTAGAATTTTTTTCTTGCTCACTTGAACCTATTTTCATGGCCATAGTTGTAAACTGTTGTATTGTGCTGTAAAATGCAATGATgttcttaaagggatactttgggattttggcaatgaagccctttatctacttctccACTAATGAAGGAAGTTCGATGGGGTTACCGTAGACTTCGTcatgcgctaatgctagttaccaacttccttcaaactgcatgcagaggTATAAAAATGGTATTGACATGTTAATCGGACTGACTCTGGGAAATAAATtgaagggcttcattgccaaaatcctgaagtatccctttaactccTCAGCCATTATTAAAATGTACCACTTATTGTTCAAGTGCTCTTTTAGGTTGTGAAAAAACATTGATGGTTATATCTTAGTGTGGTAGCTGTCAGTGCATTTGGGAGAAAACAATTTGTAAGTGAATATACACTACAAAGTATGTgcacacctgctcgtcgaactcCTCATTCCCAACCATGGGCATTAATTGTTtggtcccccccctttgctgctataacagaatccactcttctgggaaggctttcatgtagatgttggaacgttgctgaggggacttgctttcattcagccacgagcattggtgaggtcgggcactgatgttgggtgataaggcctggctcgcagtcggcgttcccaTTTATCCCGAAGGtggtcgatggggttgaggtcagggctctgtgcagtcaagttcttctacaccgatgtcgacaaaccatttctgtatggacctcgctttgtgcacattggaattgttatgctgaaacaggaaagggccttccccaagctGTTGCGACAAAGttaaagcacagaatcgtctagaacgtCTTTGTATGCTGTAAAGTTACAATTTCCCGTCACTGGATCTAAGGGGCCTAAccccaaccatgaaaaacagccccagaccattattcctcctccaccaaactttacagttggcactatgcattggggcacgTAGCAAACCCCCGATTTGTCTTTTGGactggtgatcttaggcttatgtgcggctgctcggccatggaaacccatttcatgaagctcccgactaacctttcttgtgctgatgttgttccaaactgcctctagaagcttggtagtgagtgttgcaacccgaggatagacaatttttacgcgcttcagcactcggtggtagCGTTCTGTGAGCTagatgttttcacttcacaataaaagcacttacagttgaccagggcggCTCTAAcggcagacatttgacgaactgacttgttggaaaggtggcatcttatgacggtactactttgaaagtcactgagctgttcagtaaggccattctactgtcagtgtttgtctatggagattgcatggctgtgtgcttggtttTATGCGCTTGTCAGcagcgggtgtggctgaaatagccgaatccattaatttgaagggctgtccacatacttgtgtgtatatattttaaCACTTACACCAAAACAAATGTATAGGAAATAGCATGTAGTGTGTTGCTCCTTGTTTTAATAAAGCCCCATTCAGAGATGAAAGATTTGAGTTGATTGTTGTCACTAACCAGGTATCCAACCATTTTATGTGTATGAATTACCTGATGCAGAAATATActcatgacaggcctgatggaaacagcaaatGTATTGGTAAAATGTCAAAATGTCGATTAAAATAAAATATGCTACACAAGTTAA

Function

NR:

description
uncharacterized protein LOC110538127

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624738.2 False 5238 mRNA 0.46 2 22883978 22899520
XM_021624747.2 True 5412 mRNA 0.47 3 22883978 22899520

Neighbor

gene id symbol gene type direction distance location
LOC110538076 LOC106578103 coding downstream 1042 22864942 ~ 22882936 (-)
LOC110534486 NA coding downstream 30132 22853130 ~ 22853846 (-)
LOC118936533 LOC106605595 coding downstream 33128 22847803 ~ 22850850 (-)
LOC118938551 LOC106605594 coding downstream 38497 22839988 ~ 22845481 (-)
LOC110538050 LOC106605593 coding downstream 45470 22822697 ~ 22838508 (-)
LOC110538037 LOC106605599 coding upstream 7566 22907086 ~ 22949770 (-)
si:dkeyp-84f3.5 LOC106605600 coding upstream 54061 22953581 ~ 22965449 (-)
LOC110538268 LOC106605601 coding upstream 68531 22968051 ~ 22971540 (-)
LOC110538089 LOC106605603 coding upstream 219862 23119382 ~ 23129010 (-)
LOC110538224 LOC106605608 coding upstream 276940 23176460 ~ 23200956 (-)
G123281 NA non-coding downstream 6905 22876235 ~ 22877073 (-)
G123277 LOC106605579 non-coding downstream 20724 22860225 ~ 22863254 (-)
G123242 NA non-coding downstream 28847 22854889 ~ 22855131 (-)
G123240 NA non-coding downstream 37515 22845750 ~ 22846463 (-)
G123234 NA non-coding downstream 44442 22838771 ~ 22839536 (-)
G123296 NA non-coding upstream 18808 22918328 ~ 22918547 (-)
G123299 NA non-coding upstream 23674 22923194 ~ 22923601 (-)
G123300 NA non-coding upstream 24306 22923826 ~ 22924025 (-)
G123310 NA non-coding upstream 31416 22930936 ~ 22931634 (-)
G123311 NA non-coding upstream 32236 22931756 ~ 22990628 (-)
G122972 NA other downstream 505818 22376153 ~ 22378160 (-)
LOC110537842 NA other downstream 726444 22120579 ~ 22157534 (-)
G122829 LOC106605673 other downstream 856261 22026299 ~ 22027717 (-)
G122761 LOC106578847 other downstream 1028077 21851433 ~ 21856413 (-)
G122733 LOC106592382 other downstream 1071546 21796507 ~ 21812432 (-)
G123308 NA other upstream 105466 23004986 ~ 23005812 (-)
G123435 NA other upstream 286120 23185640 ~ 23199252 (-)
LOC110538355 LOC106577931 other upstream 380659 23279116 ~ 23281851 (-)
G124840 NA other upstream 1004319 23903839 ~ 23904677 (-)
LOC110538705 LOC106577653 other upstream 1259647 24144519 ~ 24172836 (-)

Expression


Co-expression Network