LOC110538268 (LOC106605601)


Basic Information

Item Value
gene id LOC110538268
gene name LOC106605601
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22968051 ~ 22971540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624985.2
GTACAACCTGCTATATAGTTGTAGTTATACACGTGCAGTGTTCAACGAATCAGTTTCCTGGTTCCGAATTGCATGTGAACGCGGCATATATAGCTTGATGCGTGTGTCAACATTTCAATTAATTTTGTAATTGTGGCGGAACAAATTAAGAACTGACGTCACACACTTCAAGATACTTCACAGTCTGCGCCCTCCTGACTACAGCAGTGTAGTCGAAGCCTTTTCGTGCCAGACAACGTCCTTCAAGTCCTTCAAGCCGTTCGCCTGTTCTGGTTTGAATATACACGTTATTCAAGGTTCTCACAATGATGGCCTTAACCACAACTCCTTTGTATCCTGAGATCTGGACAGAGCTGTCTCACAACGGCTCATCGCCAGGAAACTCGACAGATGACTATGAGGACTACCCTGACGAGCACGCAGAGCTCCGGCAGTCCCTCAACATCATGTCCCTCATCGTTTACTGCCTGGCCTTTGTGCTGGGGGTTCTGGGAAATGGACTTGTCATCTGGGTGACGGGATTTAAGATGAAAAAGACGGTCAACACGGTGTGGTTCCTCAACCTGGCTGTGGCCGACTTCCTTTTCACAGTGTTCCTGCCTCTAAGCGTGACCTACACAGCCATGGACTTTCACTGGCCTTTCGGCAAGTTCATGTGCAAGCTCAACTCCACGATCAGCTTCTTCAACATGTTCGCCAGCGTCTACATCCTGGTGGTCATCAGCATGGACAGGTGTGTGTCCGTGGTGCGCCCTGTCTGGGCCCAGAACCATCGGAACATACGCAAGGCATCCTATATCAGTCTGGGTGTCTGGCTGTGGGCCCTGGTCCTCAGCTCCCCCTACTTTGTCTTCCGGGACATCGGGGCGTCCTACAAGAACAAAGAAATCATCAACTGCTTCAACAACTTTGCTTTCTCGGATGACTATGACACAACGGAGGTGGCAGAGCTGCGAGTGTTCCGCCATCAGGCCATGATCGTCACCCGCTTCCTGCTGGGCTTCGTGGTGCCCTTCGCCATCATCGTCACTTGTTACGCCGTCATCATCCACCGGCTCAAGAGGAAACGCAACCTGGCCAGCCACTCCGGGCGGCCATTCAAGATCATCGTCGCCGTCATCACAGCTTTCTTCCTGTGCTGGGCCCCCTACCACATCATGGCCCTGATCGAGATGGTGAACAACGCGGCCGCTGAGTTCAGCCACACGTTAGACCACGTCACCACCATCGGGGTCCCCATAGCCACCAGCCTGGCCTTCCTCAACAGCTGTCTGAACCCCCTGCTGTACGTGTTCATGGGCCAGGACTTCAAGGAGAAGCTGCGCAAGTCTATTCTGACGGTTCTGGAGAGTGCCTTCACCGAGGAAGTGTCAAAGTCCAACCACACCTACACAAACTCTGGACTCACAAGCCGTAGCAAGGAGAAGTCCTATTCTGATGCTGAGGTATAAGGTCTTATATTATAATGAGAAAAACTTTATTGACCACACAATGTGGAAATTTGACTTTGGCTTTATGATAACATGATTGACATCCTTAGAAGCAAAGAAAATACAAACATTAGAAGCCCCTTATCATCAAGGTAATTCAATAATGTTTTCAAACAGCTCGATACTTAGTTTAAGGGAAAGTTTAAGGCAGGATTTCAGAATTTGAATGCTGAGCATCTACTCAGTTTTAACAAGGTACATCTCCAGGACTGAATTCAAATCAACAAGTTTGATTTCAATAACCTTTTGTGACTCAGAAATGATGGGGTCTGTGAACACATTTCAGCACTGTTTTTGTATGGGCAATACAGTTACTAATGTACACATGTTGAAAGCGGGGTAGACTGATAATAGAGAATACTGGATAAGATAAGAATAATTTGTATGATACAGACATGTCATTGTTCAAGCTGAAGATATAAATTGTCTGTCTTTTCATTCAAAGACACTTTTTGTACATACTTGTTTTTGTTCAAATGAGGCTAATATTTTCTGTGATTTAAACGTGCATTGTTTTATTGAAGGAATGTTGTTTTTCCTTAATACTTTGAAGTATATGTTTGCATTTGTATACTTTTTTATGTTTGTATGATGTTATTAAATGCTTGAATAGA

Function

NR:

description
chemokine-like receptor 1

GO: NA

KEGG:

id description
K04245 CMKLR1; chemokine-like receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624985.2 True 2104 mRNA 0.46 3 22968051 22971540

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-84f3.5 LOC106605600 coding downstream 2602 22953581 ~ 22965449 (-)
LOC110538037 LOC106605599 coding downstream 18281 22907086 ~ 22949770 (-)
im:7147486 LOC106605599 coding downstream 68531 22883978 ~ 22899520 (-)
LOC110538076 LOC106578103 coding downstream 85115 22864942 ~ 22882936 (-)
LOC110534486 NA coding downstream 114205 22853130 ~ 22853846 (-)
LOC110538089 LOC106605603 coding upstream 147842 23119382 ~ 23129010 (-)
LOC110538224 LOC106605608 coding upstream 204920 23176460 ~ 23200956 (-)
LOC110538290 LOC106605611 coding upstream 252949 23224489 ~ 23233768 (-)
LOC110538325 lin37 coding upstream 290923 23262463 ~ 23267059 (-)
hspb6 hspb6l coding upstream 304498 23276038 ~ 23278785 (-)
G123310 NA non-coding downstream 36417 22930936 ~ 22931634 (-)
G123300 NA non-coding downstream 44026 22923826 ~ 22924025 (-)
G123299 NA non-coding downstream 44450 22923194 ~ 22923601 (-)
G123296 NA non-coding downstream 49504 22918328 ~ 22918547 (-)
G123283 NA non-coding downstream 78072 22889732 ~ 22889979 (-)
G123337 NA non-coding upstream 10802 22982342 ~ 22982609 (-)
G123346 NA non-coding upstream 21522 22993062 ~ 22993274 (-)
G123348 has1 non-coding upstream 23439 22994979 ~ 22995225 (-)
G123306 LOC100194703 non-coding upstream 30666 23002206 ~ 23003912 (-)
G123307 NA non-coding upstream 34299 23005839 ~ 23006807 (-)
G122972 NA other downstream 589891 22376153 ~ 22378160 (-)
LOC110537842 NA other downstream 810517 22120579 ~ 22157534 (-)
G122829 LOC106605673 other downstream 940334 22026299 ~ 22027717 (-)
G122761 LOC106578847 other downstream 1112150 21851433 ~ 21856413 (-)
G122733 LOC106592382 other downstream 1155619 21796507 ~ 21812432 (-)
G123308 NA other upstream 33446 23004986 ~ 23005812 (-)
G123435 NA other upstream 214100 23185640 ~ 23199252 (-)
LOC110538355 LOC106577931 other upstream 308639 23279116 ~ 23281851 (-)
G124840 NA other upstream 932299 23903839 ~ 23904677 (-)
LOC110538705 LOC106577653 other upstream 1187627 24144519 ~ 24172836 (-)

Expression


Co-expression Network