LOC110538188 (LOC106578351)


Basic Information

Item Value
gene id LOC110538188
gene name LOC106578351
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22993751 ~ 22997374 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624836.2
tggACCCCGTATTGTTGCCATAATAATCCTTAAAATAATGATTAGCCTTTTTCAATCAATTCATTTAATTCAATAAATGACATCTAATCTTTAATTTAGCCTATTTGTTcctgtttcaatatatttatctTCAATATTCATCTTCATTGATTGACAACAGGTATCTAAAGGGGGAAAAATGGAACTGAAACCGTTACTAAGGCAGGTGGGCTCGATAGTCCGTGCCATCCTGACATTCCTCTTTGCCCTGGTGGTGCTGGGGGTGATGGTGTGGGCCTATGTTCAGGGCTTCCAGCTGGCCACCTCCCCATACGGCATCATCTCCTTTGGGTTCTATGGCCTCCTGCTGGGGCTCCACGTCCTGGTCCAGAGCTTTTTCGCCTTCGTGGAGCACCGCCGCATGAGGGCCCGAAGCAAGGCCTGCACATTCACCAAGACCATCGGTTTCACTATCTCAGCCTACCAGGAGGACCCAGAATACCTGCGTGAGTGCCTCAACTCCATTCGGGCCCTCAAATACCCTCCAGAGCTGCTGCGGGTCATCATGGTGGTGGATGGGAACTCAGAGGACGACCTCTACATGCTGGAGATGTTCAGGGAGGTGTTTGCAGATCAGGACCCTGGCTGTTACGTGTGGAGGAATAACTACCACACATGGGACCCCACCCAGACCCAGGAGGGGGGCATCCCCGGAGTGATAGGCCCTGCCGGGGATGCTAGTTATGGGCTGGGAGAGGACCCccagaggagggaggtggaggatcTGATCAACAGCAGGAGGTGTGTGTGCATCATGCAGAAGTGGGGTGGAAAGAGGGAGGTGATGTACACAGCGTTCAAGGCACTGGGACTGTCGGTGGACTACATACAGgtgTGTGACTCTGACACCAAGCTAGACCCCCTGGCTACGGTGGAGCTGTGTAAGGTTCTGGAAAGCAACCAGAAGTACGGGGCGGTGGGAGGAGACGTGATGATCCTCAACCTCAAGGAGTCCTACATCAGCTTCATGAGCAGCCTGCGCTACTGGATGGCGTTCAACATCGAGAGGTCCTGCCAGTCCTTCTTCAACTGTGTCTCCTGCATCAGCGGTCCCCTGGGTTTGTACAGGAATGACCTCCTCCAGCAGTTCTTAGAGTCCTGGTACAACCAGAAGTTCCTGGGGACTCACTGCACATTTGGGGATGACAGACATCTCACCAACCGCATGCTCAGCATGGGCTATGCCACCAAATACACGGCCCGCTCCAAGTGTTACACGGAGACGCCAGGCCAGTTCCTCCGGTGGCTCAACCAGCAGACGCGCTGGACCAAGTCTTACTTCCGCGAGTGGCTCTACAACGCCATGTGGTGGCACAAGCACCACCTGTGGATGACCTACGAGTCCATCGTCTCTGGTGTCTTCCCCTTCTTCGTCACGGCCACCATCATCCAGCTGTTCTGGACAGGCACCCTGTGGGACATCCTCTGGGTCCTCTGCTGCATCCAGCTCATTGGCCTGATCAAGGCAGCCTATGCCTGCATCCTGCGCCGTGACCTGGTCATGGTGTTCATGTCTCTCTACTCTGCCCTCTACATGACCAGCCTGCTGCCCGCCAAGTACTTTGCCATCATCACCATGAACAAGAGCAGCTGGGGCACGTCAGGCCGCCGCAAGATGGTTGGGAACTACATCCCCCTGCTGCCTCTGTCGGTGTGGGCGGCCATCTTGCTGGGCGGGTCCTGCTACACCATCTACAAGGAGAGCCAGAAGGGCTGGTTCACGCCGGCTAAGGTCCTAGAGACCAGGTTTCTGATCTACGGCTGTGTGGCGTACGTCTGCTACTGGTTCCTCATGATCTTCCTCTACTGGGTGTGGTTCCGCAGGCTGTGTAGGAAACGCTCCCAAAGTTATGACGTAAGCGTATAGGGACAGTTTTCTGTACAAGGAAAAAAATACTGGATATTTAGTATTTATTTAGTGTTTTGTACATCAaagatatttacattttttatgtcATCTTCTGCTACAGTTGCTGTTTGCGAACAGATAACTTTTATACAGCTGCTAAATCAACTGAACCAtatcatatataaatgtatataatgtactgtatatgagaACAATTACCTAGACTCTGGGAAGCTTCATCAAGAATAGTGTCAAAGATGAGAATACATTGGTGATAACTACAGTTTGCCGTGCTACTGAAGATGGAGAAAGGAGTTGTTAGTTGTTAAGAGAGTGAATATTTGACATTCAGTTGTCTTTACACATACTTTATAACAGAAACTGTATATGGAAGCAATATAGTATACCTCTCAGGAGTCCTCTCAGCAGTTGATGATAAGACTAATAATCTGTTCTAGATGGCCCTTGATTTGCTGTTGCTTATTTCTACTGACTTCCTAACGAACAAAGTGTTACATTTATTTAATATAAGGATTTGTAATCTCTCTTGAGCACAACATGATTGAACTGTTATTAGATCACGCTGTATATGACTTGATATGTGCCTTACACAACAAAATACCATATCAGACATTGtagcttttcttttttttaaaatatcCTTCTCTCAATAATGCACTGGAAATTGGACtgggattattttttttttaaacattacctTGGAAGAAAACTAGCAAAATGTCTTGTGGTTCTAAGTGAAAATATTTATTTCAGTGTAAATAATAGTGACAGACTCCGTAGGAAGACAATTAGACAATCATACATGTGATGTCCACTCCCAGGGATGCGTTGTGAAGCCCTGTGAGATAGACGGACAATGGTTCTGCTGTCATGTTGAGTATAGACATGAGAGATGCACCTGGCTTGGTTTGAACTGAACTGACTGAGCACATCTGTATAAATTCTTCATGCACATTTTTCATTGTATGTGATGATTTCCTTTGTCATATTATTTTGCAAATGTGAATGAATGTATGTATGTTTTGGGAATTTGATAAA

Function

NR:

description
hyaluronan synthase 1-like

GO:

id name namespace
GO:0030213 hyaluronan biosynthetic process biological_process
GO:0050501 hyaluronan synthase activity molecular_function

KEGG:

id description
K00752 hasA; hyaluronan synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624836.2 True 2947 mRNA 0.47 4 22993751 22997374

Neighbor

gene id symbol gene type direction distance location
LOC110538314 trp-iii coding upstream 135679 22856570 ~ 22858072 (+)
LOC110538298 LOC106605596 coding upstream 137073 22854739 ~ 22856678 (+)
LOC110537974 LOC106605680 coding upstream 449347 22496121 ~ 22544404 (+)
LOC118944072 NA coding upstream 601572 22390731 ~ 22392179 (+)
LOC110537956 LOC106605684 coding upstream 608994 22381333 ~ 22384757 (+)
LOC110538306 LOC106605606 coding downstream 58407 23055781 ~ 23069547 (+)
kcnn4 LOC106578046 coding downstream 79972 23077346 ~ 23119231 (+)
LOC110538208 smg9 coding downstream 130862 23128236 ~ 23135855 (+)
LOC110538332 LOC106605607 coding downstream 151131 23148505 ~ 23151891 (+)
si:dkey-238d18.4 LOC106605609 coding downstream 238846 23236220 ~ 23245933 (+)
G122560 NA non-coding upstream 11182 22982345 ~ 22982569 (+)
G122515 NA non-coding upstream 63088 22930343 ~ 22930663 (+)
G122509 NA non-coding upstream 69325 22924134 ~ 22924426 (+)
G122508 LOC106581475 non-coding upstream 71342 22922126 ~ 22922409 (+)
G122504 NA non-coding upstream 74695 22918837 ~ 22919056 (+)
G122571 NA non-coding downstream 1397 22998771 ~ 22999137 (+)
G122572 NA non-coding downstream 3818 23001192 ~ 23001689 (+)
G122573 LOC100194703 non-coding downstream 4561 23001935 ~ 23005627 (+)
G122575 NA non-coding downstream 13048 23010422 ~ 23012373 (+)
G122593 NA non-coding downstream 53409 23050783 ~ 23051094 (+)
G122459 LOC106578191 other upstream 182488 22810767 ~ 22811263 (+)
apoc4 NA other upstream 643815 22348543 ~ 22349936 (+)
LOC110537939 apoc1 other upstream 647136 22342491 ~ 22346615 (+)
G122030 NA other upstream 974936 22015130 ~ 22018815 (+)
LOC110537735 LOC106595974 other upstream 1168657 21821165 ~ 21825285 (+)
G123980 NA other downstream 827319 23824693 ~ 23825502 (+)
LOC110538497 LOC106605627 other downstream 864543 23861576 ~ 23881639 (+)
G124121 LOC106605585 other downstream 1149487 24146861 ~ 24148593 (+)
LOC110538915 LOC106605649 other downstream 1543630 24540963 ~ 24544247 (+)
G124451 LOC106578403 other downstream 1875677 24873051 ~ 24873834 (+)

Expression

LOC110538188(LOC106578351) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 2.
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LOC110538188(LOC106578351) Expression in each Bioproject

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LOC110538188(LOC106578351) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
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Co-expression Network