LOC110538208 (smg9)


Basic Information

Item Value
gene id LOC110538208
gene name smg9
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23128236 ~ 23135855 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624878.2
ATGCAGCTGGCTTCGTTTCCCAACGAAAGAATTTGAGAGCTGTACTTCAGCGTTACCATCTGATTTTGTTTCCGTTTTGTGGATTCTATCTGGAAAGCATTTAGCTAATCCTTCTTGAAAACCAAATTAATCGCACAATTTGACCACAGTGTGCAACATGTCAGAATCTGGCCACAGTCAACCTGGCATGTACGGacagggaaggaggagaaggCGACGCCGAGACAGGGATGTGGGTCCCCCGGGGCAAAACCTCTCTGGTCCCAGTCGAGATCGGGAATATGTCCCCAGAGAACGCAGGGATGGCAGTGAGGAGCCTCCAGGACCACTCCTTCAGAAGACCCCCATCATCCTGGCCAAACCCCCTGGAGAACGGTCCAAGCCTTCCCAGAGTGTACCCACCAGTGGAGGCCAGGCCCTGGAGAAGCCCATCATGCTCATCAAGTCCAGGGAGGACGGGGGGAAACCAGGGACCCCTCCTGAGGTGGCTTCCCCGGCCTCTGGCTCTGGGGCCTCAAAGCTAGAGAGGGAGGGCCAGCGCCCTACCCAACCTGTCTACCAGATCCAAAACAGAGGCATGGGAGCAGCTGCTTCCAGCGGTGCTGTCGACCCTGTGATTGGCCAGACCAAGCTCGTCCCCCCTGAGAAGATGAAGCACAGCATCAAGCTGGTGGACGATCAGATGAACTGGTGTGACAGCGCCATGGAGTACCTAAGGGACCAGACAGACATGTTGGTAGTGGGAGTCATTGGCCTGCAGGGAACAGGGAAATCCACCATCATGTCTCTCCTGTCTGCCAACGCACCTGAAGAAGACCAAAGgggcTATGTGTTCAGGGCTCAGACTCAGGAGatcaaagagagaggagggaaccagaGCACTGGTATTGACTTCTACATTACCCAGGAAAGAGTAATCTTCTTGGACACACAGCCCATTCTCAGCCCCTCCATTTTGGATCACCTCATCAACAACGACCGCAAGCTGCCTCCAGAGTACAACCTCCCTCACACCTATGTGGAGATGCAGTCTCTTCAGATCACTGCCTTCCTGTTCACAGTGTGCCACGTGGTCATTGTGATTCAAGACTGGTTCACTGACATCAACCTCTACAGGTTCCTCCAGACAGCAGAGATGTTGAAGCCCTCCACCCCCTCAGCCAGCCACGACAGCACTGGTTCTTCTGGCAACGAAGAGGGATCAGAGTACTACCCTCACATAGTGTTCCTGCAGAACAAATCTAGTCGTGATGAGTTCTGTCCCAGAAACCTGAAGAAGATGCATATGGCAGTGGACAAGCTGATGGCCCACTCCCATCTGAAATACAAAGGCACGTTGTCCATGCTGGACTGTAACATTTTCCCTGGCCTGGACCGCGACTACCTGGAAACAGAGGTCAACATGTTCCTGCTGCCCCTCATGGAGAATGAGGGGGAGGACGCTCTAACCAAAGCAGGGTCCGGGGCcgcccccctcttctctctcctcccggGCTACAGAGGACACCCCACCTTCTCCTCTCAGGTCTCCAAGCTCCGCAGCCAAATCCTGGCCATGTCCCGCTGTCAGCTGTCACACACCATTCTCACAGAGAAGAACTGGTTTCACTATGCAGCTCGCATCTGGGACGGGGTGAAGAAGTCCTCAGCCCTGTCTGAATACAGTCGTCTACAGGCCTAGCAACAATGTCAACCTGTTGTTATGAATATACTGGAGGAAATGGATGTCCCTGTCCTACATGAGGACcagaagagacagagtgaggtGGGTCTGAAGATGGACAGTGCCAGTACTATTGGGCTTACAGGTTCAGTCAGTGGTGATATGAGGTGCTTGATGTTGAGGAGAGgtccatctcatctcatctcatggAGCTACAGATAGTTCAACTTTGGTGTCTTTGTaacagagggagaaaaggggacAGCTGATCAGATTCAGGTGTCAATGTGACAGTAAATAACCCTGCTAAGTGTTAGATTCAGATGGTACAGAAAATGACTGACTTTGAAAGATACATTCTGACTAACATGATGCAAATGGTGAAAGTAATATTTACTTGAAGCATACAGCGGTGCTTCATTTTTATTTCAAAATGTGTGATTGTCTAAAGTATTTGTTACCTGTTCACCtgaaatgttttgatttgtttattatGTAAAGATGGAGCTGAGATTCAGGACTAGACACTTCTGCAACTTTACAAGAATTTATACAAATATGATGTAATCATTAACATTAAACCGATATACTCTGTTA
>XM_036942756.1
TCCAAGACGAGCATTTGCCCTTTTATATTCAGGTAGTTGCGGGATGATAGTCCTTCCATTGAAAATGTCTAGGAACAGCCCCCGGCTTCAGACCCTTGCGGTCTGACGTAGGAAGATATTCGCTAGGGTTGAAATTTGACCACAGTGTGCAACATGTCAGAATCTGGCCACAGTCAACCTGGCATGTACGGacagggaaggaggagaaggCGACGCCGAGACAGGGATGTGGGTCCCCCGGGGCAAAACCTCTCTGGTCCCAGTCGAGATCGGGAATATGTCCCCAGAGAACGCAGGGATGGCAGTGAGGAGCCTCCAGGACCACTCCTTCAGAAGACCCCCATCATCCTGGCCAAACCCCCTGGAGAACGGTCCAAGCCTTCCCAGAGTGTACCCACCAGTGGAGGCCAGGCCCTGGAGAAGCCCATCATGCTCATCAAGTCCAGGGAGGACGGGGGGAAACCAGGGACCCCTCCTGAGGTGGCTTCCCCGGCCTCTGGCTCTGGGGCCTCAAAGCTAGAGAGGGAGGGCCAGCGCCCTACCCAACCTGTCTACCAGATCCAAAACAGAGGCATGGGAGCAGCTGCTTCCAGCGGTGCTGTCGACCCTGTGATTGGCCAGACCAAGCTCGTCCCCCCTGAGAAGATGAAGCACAGCATCAAGCTGGTGGACGATCAGATGAACTGGTGTGACAGCGCCATGGAGTACCTAAGGGACCAGACAGACATGTTGGTAGTGGGAGTCATTGGCCTGCAGGGAACAGGGAAATCCACCATCATGTCTCTCCTGTCTGCCAACGCACCTGAAGAAGACCAAAGgggcTATGTGTTCAGGGCTCAGACTCAGGAGatcaaagagagaggagggaaccagaGCACTGGTATTGACTTCTACATTACCCAGGAAAGAGTAATCTTCTTGGACACACAGCCCATTCTCAGCCCCTCCATTTTGGATCACCTCATCAACAACGACCGCAAGCTGCCTCCAGAGTACAACCTCCCTCACACCTATGTGGAGATGCAGTCTCTTCAGATCACTGCCTTCCTGTTCACAGTGTGCCACGTGGTCATTGTGATTCAAGACTGGTTCACTGACATCAACCTCTACAGGTTCCTCCAGACAGCAGAGATGTTGAAGCCCTCCACCCCCTCAGCCAGCCACGACAGCACTGGTTCTTCTGGCAACGAAGAGGGATCAGAGTACTACCCTCACATAGTGTTCCTGCAGAACAAATCTAGTCGTGATGAGTTCTGTCCCAGAAACCTGAAGAAGATGCATATGGCAGTGGACAAGCTGATGGCCCACTCCCATCTGAAATACAAAGGCACGTTGTCCATGCTGGACTGTAACATTTTCCCTGGCCTGGACCGCGACTACCTGGAAACAGAGGTCAACATGTTCCTGCTGCCCCTCATGGAGAATGAGGGGGAGGACGCTCTAACCAAAGCAGGGTCCGGGGCcgcccccctcttctctctcctcccggGCTACAGAGGACACCCCACCTTCTCCTCTCAGGTCTCCAAGCTCCGCAGCCAAATCCTGGCCATGTCCCGCTGTCAGCTGTCACACACCATTCTCACAGAGAAGAACTGGTTTCACTATGCAGCTCGCATCTGGGACGGGGTGAAGAAGTCCTCAGCCCTGTCTGAATACAGTCGTCTACAGGCCTAGCAACAATGTCAACCTGTTGTTATGAATATACTGGAGGAAATGGATGTCCCTGTCCTACATGAGGACcagaagagacagagtgaggtGGGTCTGAAGATGGACAGTGCCAGTACTATTGGGCTTACAGGTTCAGTCAGTGGTGATATGAGGTGCTTGATGTTGAGGAGAGgtccatctcatctcatctcatggAGCTACAGATAGTTCAACTTTGGTGTCTTTGTaacagagggagaaaaggggacAGCTGATCAGATTCAGGTGTCAATGTGACAGTAAATAACCCTGCTAAGTGTTAGATTCAGATGGTACAGAAAATGA
>XM_021624887.2
TGTCTGTTTATGTTTGGAATTTGAGCACTGCGGGACACTACAAAAACGTATGTTTCGCAATTCCGCCATTGGCATTTCTGTTGCCGGAAGTGCGCCTACCCACCTGCAGCTACTTCCGCTTTTAAGAACCCTGAATTGACCACAGTGTGCAACATGTCAGAATCTGGCCACAGTCAACCTGGCATGTACGGacagggaaggaggagaaggCGACGCCGAGACAGGGATGTGGGTCCCCCGGGGCAAAACCTCTCTGGTCCCAGTCGAGATCGGGAATATGTCCCCAGAGAACGCAGGGATGGCAGTGAGGAGCCTCCAGGACCACTCCTTCAGAAGACCCCCATCATCCTGGCCAAACCCCCTGGAGAACGGTCCAAGCCTTCCCAGAGTGTACCCACCAGTGGAGGCCAGGCCCTGGAGAAGCCCATCATGCTCATCAAGTCCAGGGAGGACGGGGGGAAACCAGGGACCCCTCCTGAGGTGGCTTCCCCGGCCTCTGGCTCTGGGGCCTCAAAGCTAGAGAGGGAGGGCCAGCGCCCTACCCAACCTGTCTACCAGATCCAAAACAGAGGCATGGGAGCAGCTGCTTCCAGCGGTGCTGTCGACCCTGTGATTGGCCAGACCAAGCTCGTCCCCCCTGAGAAGATGAAGCACAGCATCAAGCTGGTGGACGATCAGATGAACTGGTGTGACAGCGCCATGGAGTACCTAAGGGACCAGACAGACATGTTGGTAGTGGGAGTCATTGGCCTGCAGGGAACAGGGAAATCCACCATCATGTCTCTCCTGTCTGCCAACGCACCTGAAGAAGACCAAAGgggcTATGTGTTCAGGGCTCAGACTCAGGAGatcaaagagagaggagggaaccagaGCACTGGTATTGACTTCTACATTACCCAGGAAAGAGTAATCTTCTTGGACACACAGCCCATTCTCAGCCCCTCCATTTTGGATCACCTCATCAACAACGACCGCAAGCTGCCTCCAGAGTACAACCTCCCTCACACCTATGTGGAGATGCAGTCTCTTCAGATCACTGCCTTCCTGTTCACAGTGTGCCACGTGGTCATTGTGATTCAAGACTGGTTCACTGACATCAACCTCTACAGGTTCCTCCAGACAGCAGAGATGTTGAAGCCCTCCACCCCCTCAGCCAGCCACGACAGCACTGGTTCTTCTGGCAACGAAGAGGGATCAGAGTACTACCCTCACATAGTGTTCCTGCAGAACAAATCTAGTCGTGATGAGTTCTGTCCCAGAAACCTGAAGAAGATGCATATGGCAGTGGACAAGCTGATGGCCCACTCCCATCTGAAATACAAAGGCACGTTGTCCATGCTGGACTGTAACATTTTCCCTGGCCTGGACCGCGACTACCTGGAAACAGAGGTCAACATGTTCCTGCTGCCCCTCATGGAGAATGAGGGGGAGGACGCTCTAACCAAAGCAGGGTCCGGGGCcgcccccctcttctctctcctcccggGCTACAGAGGACACCCCACCTTCTCCTCTCAGGTCTCCAAGCTCCGCAGCCAAATCCTGGCCATGTCCCGCTGTCAGCTGTCACACACCATTCTCACAGAGAAGAACTGGTTTCACTATGCAGCTCGCATCTGGGACGGGGTGAAGAAGTCCTCAGCCCTGTCTGAATACAGTCGTCTACAGGCCTAGCAACAATGTCAACCTGTTGTTATGAATATACTGGAGGAAATGGATGTCCCTGTCCTACATGAGGACcagaagagacagagtgaggtGGGTCTGAAGATGGACAGTGCCAGTACTATTGGGCTTACAGGTTCAGTCAGTGGTGATATGAGGTGCTTGATGTTGAGGAGAGgtccatctcatctcatctcatggAGCTACAGATAGTTCAACTTTGGTGTCTTTGTaacagagggagaaaaggggacAGCTGATCAGATTCAGGTGTCAATGTGACAGTAAATAACCCTGCTAAGTGTTAGATTCAGATGGTACAGAAAATGA

Function

symbol description
smg9 Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Orthologous to human SMG9 (SMG9 nonsense mediated mRNA decay factor).

NR:

description
protein SMG9 isoform X1

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG:

id description
K18735 SMG9; protein SMG9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624878.2 False 2260 mRNA 0.50 14 23128236 23135855
XM_036942756.1 False 1998 mRNA 0.54 14 23128721 23135597
XM_021624887.2 True 1998 mRNA 0.54 14 23128947 23135597
Loading

Neighbor

gene id symbol gene type direction distance location
kcnn4 LOC106578046 coding upstream 9005 23077346 ~ 23119231 (+)
LOC110538306 LOC106605606 coding upstream 58689 23055781 ~ 23069547 (+)
LOC110538188 LOC106578351 coding upstream 130862 22993751 ~ 22997374 (+)
LOC110538314 trp-iii coding upstream 270164 22856570 ~ 22858072 (+)
LOC110538298 LOC106605596 coding upstream 271558 22854739 ~ 22856678 (+)
LOC110538332 LOC106605607 coding downstream 12650 23148505 ~ 23151891 (+)
si:dkey-238d18.4 LOC106605609 coding downstream 100365 23236220 ~ 23245933 (+)
hsc70 hsp70-3 coding downstream 110697 23246552 ~ 23251865 (+)
LOC110538364 ctrl coding downstream 116979 23252834 ~ 23255257 (+)
LOC110538320 LOC106605612 coding downstream 125248 23261103 ~ 23261862 (+)
G122632 NA non-coding upstream 310 23127682 ~ 23127926 (+)
G122630 NA non-coding upstream 11028 23116765 ~ 23117208 (+)
G122617 NA non-coding upstream 30277 23097430 ~ 23097959 (+)
G122593 NA non-coding upstream 77142 23050783 ~ 23051094 (+)
G122637 NA non-coding downstream 4197 23140052 ~ 23140544 (+)
G122667 NA non-coding downstream 49836 23185691 ~ 23199253 (+)
G123471 NA non-coding downstream 122964 23258819 ~ 23259033 (+)
G123473 NA non-coding downstream 124481 23260336 ~ 23260565 (+)
LOC110534494 LOC106577938 non-coding downstream 131509 23267159 ~ 23277132 (+)
G122459 LOC106578191 other upstream 316973 22810767 ~ 22811263 (+)
apoc4 NA other upstream 778300 22348543 ~ 22349936 (+)
LOC110537939 apoc1 other upstream 781621 22342491 ~ 22346615 (+)
G122030 NA other upstream 1109421 22015130 ~ 22018815 (+)
LOC110537735 LOC106595974 other upstream 1303142 21821165 ~ 21825285 (+)
G123980 NA other downstream 688838 23824693 ~ 23825502 (+)
LOC110538497 LOC106605627 other downstream 726062 23861576 ~ 23881639 (+)
G124121 LOC106605585 other downstream 1011006 24146861 ~ 24148593 (+)
LOC110538915 LOC106605649 other downstream 1405149 24540963 ~ 24544247 (+)
G124451 LOC106578403 other downstream 1737196 24873051 ~ 24873834 (+)

Expression

LOC110538208(smg9) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110538208(smg9) Expression in each Bioproject

Bar chart with 21 bars.
LOC110538208(smg9) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network