si:dkey-238d18.4 (LOC106605609)


Basic Information

Item Value
gene id si:dkey-238d18.4
gene name LOC106605609
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23236220 ~ 23245933 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942760.1
AGGTGGTGTTAAAATGCTCCTGTAGCCTAAGAATTGCGGCTTTCAACCCGACATAAAAACCCGAATGTAGGCCACACACAAAACAATAAGGTTCAGTCATATGACTGACTCACAGGAAGAACTTTGGTCGTGAGGTTTAAAGTGGGCAGAGCATAGCAGTCTCACACAACATGGATTCCTGCCTGAACTGGGAAATGTTCTAACTCCTGTGTATTGAAGGATATTCCATTGAAAGTCGGAGCGCAGCGCATCATAAACATAACATTGAAAGGAAGTGAGTATACATCATGGACACTCTACAGGAGAACGGGCTACAGCACTCACCTGCACTCGATATTCCCGGTCGTGAAAGTACCGCCAAAGAACACGGAGTACATGGGACTCCCCTTAAAACAAAGGGAAAGCATGGGACAACTAAAATAAGTTCACGAGTCAATAATGTCACGGCGGAGTCTGGGAACCAACAGATAGTATCACTGGTAAACGCACCTGCTCTACCCACGACACCACTCGAATTACCTGGCGTTATGGACGCAGAGGGGAGAGTGGACGAGTCCAGGCTGCGGATGCACATTTTCAAGAATGGTGGTATGTCCCCTTCGGGGCGCGGCCAGGTGTGGCGTTTCCTGTTTGGGATGTACCCCTGCAGCTCCACCTCTCTGGAGCGCCCCCTACTGCAGGAGCAGCTCAACGTCCGCTACCACTCCATGAAGAGGAAGTGGCAGCAGCTTTTTCCTGCCGCCATTCGACTGCGTATAAATGGCACCGATGCTGAGTTGGTGGCAGCGGTGCGGTACTTCGATGTGAGGCAGGACAGGGTCCAGCTGCAGACTCAGAACCAGAGTGACGAGGTCAAGGAGAGGCTGTCCTTTCTGGAGCTACAGGCCCAGGTGTTGTTTGAGCGGGTGACCTTTGATCTGGAGGAGCTCCAAGAGGCCATCCGAATCATCGACAAGGATGTGCCTCGGACAGACAGAGACCTACCCTACTACTCGGGTGAAGGCTTGGGCAATCTGTTGGTGTTGAGGGATAttctcatcacatatgctgcttttCACCCAGAGGTGAGCTATGCCCAGGGGATGAATGACCTTTGTAGCCGATTCCTGGAGGTGCTGGACTCTGAGGTGGACACCTACTGGAGCTTCTCCTACTACATGGAGAAGTTCTCCAAGGACTTCCGCGCTGACGGCCTGCACAGGAAGATAGagctggaggcagcactGCTGAAGGAGTTAGATCCTCAGCTCCACACCCACCTGATAACAGATAGCATGGAGAGTTTCACCTTCTGTCacagATGGCTGCTACTGGGTTTCCAAAGGGAGTTTGAGCACTGTGATGCCCTGCGTCTCTTTGAGATCCTGAGCTGTGACCACCTGGAGCTCATCTCCCAGCAGGTGGACCGCGCCCGCTACCAGGAGAGGATCGCCCGCAGGCAGAGTATAGAGGATAAACCAGTGTCTGAGGCACAGGCCGTCAACACAGAGTTCACCTTTGAACTCTTCATCTGTGCCACCATATTATTGGACAACAGAGATGCCCTGCTGAGGTGTAGGAACGATGTGCAGCTCATCCAGTTCaccaacagTTTGCAGGGAACTCTGGACCTGAACCTCACACTGAAGAAAGCAGAGGAGCATTTCTACAACTACTGTAAGCGCTCTGCTTGGGACTATATGAACGGCCGCTGCAGGACAAGTAAAAACAAGGAGGGACACTTCTTGTTCCAGCTCCGCAGCTTCTTCTCCTGAACCCAGATCAGTCCTTAACTTAACCTCTTGAACATTCAGCTACAACCTGTAGTAACTGTGGGGTGGACTCAAAACAAGGGACCTATTTCCTAAGATGAGTGTGTGCTATTTACATGTCTTGTCCACTAACGTTGAAGCATTCATATTTCTGTGGGATCTACCTTGAGTGAGTGATGCTGCTTACTTACCAACAATTCTATCAATTTGGACTGTCTTTGTTGTTGTATCTGATTATGCTAATTTCTATCtatttaaaacatatatatttattatttagaAAGGTGTCAATGAACGGGTAGAAAAGTGTGCAACGCTGAATTGGTTACATACGTTCACCTGGAGTTTGGCCTTCTTGATTTCTATGTTTTTCTTGGTGAGTTTAGAAGAAAGCCCTGTTTACAAAATGATATAATAATTAGGACTATGATGTGGCCAAAAGGTGTTCTCACCCTTGATCTGAGATTCAACTATATAATATGTGATACTACTGGAAGAAAACAAGTCTTGGAACTGCATCAAGACCACTGAAAAATTGCATGTAGAAACAGTTTGCATGTGTTGTGACTCCCTGCTATTGgtaaacatagaaatataattacggGGATGCCTGTTCTAGTCAGTCTATTTCTAAAGGTATAAAATAGGATGCCAGCTGACCTATGTGTCATAGTGGACCTGTGTGACAGGAGTAGCTGTTCATTGGTTCAGTTCTGAGCCAATACTGTCTGGAATACTAAAATAAATATGCATGTCTGTCACAATCTTGCTTAGTGAAAGTTtgatgttagtttgttggtgatttaaatgttttattctgaTCCAGCTAATTGCCATTGAAGGAGATGTCACTTTCAGGTGTCCAGTGCTTTTAGGCAGATAGGAGTGAACATGTAATTCTGAGTATAATTGGGTTAGGAGCAATTcattaaaaaatgctttacaaaCGAAGGCCACCAGTGAGGAGGATTATTTCCAGATGTTTCACTGCTTGACATTTCAGTTCCTCGACCTGCGAGTTAGAGTGAAGAATAGGTTTCCACATGTTGGAGGGACAGGCTTGTCATTGTATGTATGGACTGTTATTATATAAGGGTTAAATGTAATAAACTGTAGGACATT

Function

NR:

description
GTPase-activating protein GYP7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942760.1 True 2873 mRNA 0.46 11 23236220 23245933

Neighbor

gene id symbol gene type direction distance location
LOC110538332 LOC106605607 coding upstream 84329 23148505 ~ 23151891 (+)
LOC110538208 smg9 coding upstream 100365 23128236 ~ 23135855 (+)
kcnn4 LOC106578046 coding upstream 116989 23077346 ~ 23119231 (+)
LOC110538306 LOC106605606 coding upstream 166673 23055781 ~ 23069547 (+)
LOC110538188 LOC106578351 coding upstream 238846 22993751 ~ 22997374 (+)
hsc70 hsp70-3 coding downstream 619 23246552 ~ 23251865 (+)
LOC110538364 ctrl coding downstream 6901 23252834 ~ 23255257 (+)
LOC110538320 LOC106605612 coding downstream 15170 23261103 ~ 23261862 (+)
LOC110534494 LOC106577938 coding downstream 21226 23267159 ~ 23277132 (+)
LOC110538034 kmt2b coding downstream 36631 23282564 ~ 23343892 (+)
G122667 NA non-coding upstream 36967 23185691 ~ 23199253 (+)
G122637 NA non-coding upstream 95676 23140052 ~ 23140544 (+)
G122632 NA non-coding upstream 108294 23127682 ~ 23127926 (+)
G122630 NA non-coding upstream 119012 23116765 ~ 23117208 (+)
G123471 NA non-coding downstream 12886 23258819 ~ 23259033 (+)
G123473 NA non-coding downstream 14403 23260336 ~ 23260565 (+)
G123464 LOC106577931 non-coding downstream 34206 23280139 ~ 23281470 (+)
G123507 NA non-coding downstream 120840 23366773 ~ 23367017 (+)
G122459 LOC106578191 other upstream 424957 22810767 ~ 22811263 (+)
apoc4 NA other upstream 886284 22348543 ~ 22349936 (+)
LOC110537939 apoc1 other upstream 889605 22342491 ~ 22346615 (+)
G122030 NA other upstream 1217405 22015130 ~ 22018815 (+)
LOC110537735 LOC106595974 other upstream 1411126 21821165 ~ 21825285 (+)
G123980 NA other downstream 578760 23824693 ~ 23825502 (+)
LOC110538497 LOC106605627 other downstream 615984 23861576 ~ 23881639 (+)
G124121 LOC106605585 other downstream 900928 24146861 ~ 24148593 (+)
LOC110538915 LOC106605649 other downstream 1295071 24540963 ~ 24544247 (+)
G124451 LOC106578403 other downstream 1627118 24873051 ~ 24873834 (+)

Expression


Co-expression Network