LOC110538238 (LOC106605616)


Basic Information

Item Value
gene id LOC110538238
gene name LOC106605616
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23393669 ~ 23405426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942732.1
ctcactcactcactcactcactcactctttctctctaactctttctctTCACTATCTCTTCTCTGTTGATCCTGTCATCTAGCTGGTGTCTCTGTGGTTTTTAGCTTCAAAACGTTCCTCGCATGCGACTCCAGCCTTTACATGTTGAATGGCGTTGTCTCAAACAGTTTCTAAACCATCTACTATTCACCTGCCCATCTCCTCTTCCCAtcactcctcccttcctcctccagacCTCCAAGATGGTCCGAGTTCACAACACCCAGTACTCCCTCTTCCTGCGCCAGGCAGATGTCCTGCGTCGCTCGGGGACGCTGTGTGATGCTGTCATCTCAGTGGAGAGCCAGGTGTTCAGGGCCCATCGGCTGGTGCTGGCCTGCGCTAGCAAAACCCTGGAGCATCAGCTCACCCTGCAGGCTGCATACTCAGACCAGCCTGATCACCTCGACCAACCTTACCACTGTAGTCTGGAGCTCCTCTCTCCACAAACATTCCAGCAGGTCCTGGACTTTGCCTACACCGAGACCCTGGAGGTCCCTGTGGATGATCTGCCCCAGCTTCTGAGGGCCGCCAAGCTCCTGGAGATGCATTCCCTGGAGGAGCAGTGTCGCAGCCAGCTGAAGAGAAATCGGGGGTGCCtgacgagagagagaagagagttgaGAGAAATAAGAGTGAGAGGAACAAAAGAAACTAGAGAAATGACAGAAACGAGAGAACTTCagataacagaggagagagatgagaaagaatTCCTGAAAGGAAGTCACATTCCAGAAGAGGGGGATCCCCAGACAATTCCCTCCATTGATCTGGAGCCCCAGAGCAGCCCATTCACTGAGGACCCCACTCTTCCTGACACTAGGGATAACACCTCTGGTTCATCACCCCCACAGAGAAAAAGGCCAAAGCCACTCACACCCACACTAGTGACCACCACACCGCCTCCATCCAGAGACAGTGTCATCGCCACCACTGCTGCCACCATCCAaccccatccccctcctcccccagcgTCGAGGGTCACGTGGCACCAAGTCAACACCCTGAGGAGGATGGCCTTGAACTATAACGACATCCTAGCAGCCAGTTCTTCTTCCCTTCAACCCTCACAGCACCTGGTGACATACCCTTtccacctctccactcctcacatGTACCCCCTGCTAATGTCCTCCATCCCGCCCCAGGTCCACAGCGCCGTCCTGGGCTACCCTGGTATCCTGCATCCATACCACCACCCCCTGCTCTCTGGGTCTCAGGAGCTGGGGGACATCCTGACGCAAGGTTTGCTGGGAAAAAGAGACCCGATGGATAAAGTGTTGATAGGTGGAGCACCAGGGGAAGGGCAAAGATACTCCCAGGAGCGTCCAGGAAGAACCCAGGACTGTCAGCACTGCAGCAAGGTCCCcctgggcagctcatggctgcAGGCCTCAACCACCTACCCCTCAGGCCCAGGTGAGACTTCTCTGGGGTGTAAGTACTGTGATCGTGGCTTCAGGGTGGAGCGGTCACTGCCGTCCCACCGACGAGATCAGGGAGGAGAGAAGCCCTACCAGTGTAATCGCTGCTCCAAGAGGTTCAGCCTCAAACACCAACTGGATACACACCACCGGGTACACACAGGAGAGAAGCCTTTTGAGTGCCGTCTGTGTGGCCAGCGGTCAAGGGACTACTCAGCCATGATCAAGCACCTGCGGACCCACGGCGGGGCCACACCCTACCAGTGTACTGTCTGCCTGGAGTTCTGTAGCAGCCTGGCTGCCATGCAGAAACACCTGAAGAACCACCCGCTGCAGGACTTTCCCCCAGACTGGACCATCAGCAGCACCTACCTGTACACATGCCATACCTGAACTAGCTTGAAGGCAAATGTAATGTCAATAGAGAATAATTTTACTACCAAACAACTACATCTCAGGGAAACTAACTCATAGAATGTAATGTACATACATGGTAACAAGACACCAGTTACCGTAGCATTTATCCATGTACTCCAAAAGTGCATGGAGTACGTCAATGCATAGTTCCACCACTAGAAGGACACTGGGTCTCAGAAAAGAATGTAAAACATGTCTAGCACCAGCAGCATTATCATTATCAAGCACAGTATTATTACCATTCTATCGTGGCTGCAGCTGAAGTCAGTCACTTAcaagagacaaggaaaggaaacaTCAAGACTATTTAGAGGCAGCAAAAAATGTGTCCTTGTTTCATATGAATGTGTCCATCTATGTTTGGCCGTTATCTCTCTCAAGAAGACTTGGGGCAAtcgttttgtgcacaaatttttGATTTTCATTTAGTCATGTGTGTTTAGTACATTTAGATGTTGTTTGAttcatatttacagtgcctttagaGTCTGCACCTCCAGGATTTTTTCCCCACGTTCTTTTGCGTTTCAAAGTGGgatagaaatatattttttttttttaatcattcagctacacaaaatagtccctaatgtcaaagtgaaacGAAAATTCTACacgtttttacaaattaataacaaTTAAATTATTAAAATATAGTAGCTGCAGAAGTACTCACACCCTTTGTTTAGCAAAGCCTAAATGAAGTAAAATTGtgtcttaacaaatcacataagttaTATGGACTCCCTCTGTGTGAAATAACAGGGAttgacatgattttttaatgactacccctTCCTCTGTTCTCCATACATAGaacatatgtaaggtccctcagccaagtattgaatttcaaactcagattcaaccacaaagaccagggagctttttgaaagcctcataaagaagacCAGTGATTGGCAGATGGGTagcaataacaaatcagacattgaatatatctttaagcatggtcaaattAATAATTGTGCTGTGGAtcatgtattaaaccacccagacacatcaaagatgcagTCATCCTTCTGATCTGAGCTGCAGGACATTAAGGAAACTGCTTAGGGTTGTTATTATGATGCCATTGGGGATTTTAAAACaactacagagttcaatggctgtgatggaagaaaactgaggatggatcaacaacattgtagtgactccacaataatgacctaaaagacagagtgagaagaagaatataaatatacagaatacaaataatccaaaacatgcataaaggcactaaagtaatactttttggcctaaatgcaaagtcTTATAATTATCTAATCAAGGTATATTAgtgtttaattttttattaatacaaaaaatacaaaaatcttccactttgatattagAATATTTTGTGGAAGCCGTTGAcctaaaaaatacaattaaatccatttgaatcccactttgtaacaccataaaatgtgaagaaatccaagggggtgTAGACTTTTTACAGGTGTTGTATATGTGCTTTAGCCTGTTGCTATTTTAATGATAGTATTGTTATAATCAATGTACTAGTTTAGCAGATGGCCTGTTTTGGTACTGAATGTAGATCCTCACACAGTCACACCCAACCACAAAGAAACAATAGCCTGTCAAACCTTTATGATATGAGACCATTGATTTGCTCTGAACTTGAGTGTGAATACATTTTGGCATAAATTACACAGCAGCTGGCATGCAGTGTGTATTTGCAATTAGTATCTCTTCAGAgaataaatgttttaaata
>XM_036942736.1
CCCAGCCATCCGTGTCATTCAACAGCCAGGTCACAATGCGTGTAGGGTCGACACTCTCCACAGTGGGTGGGTTGAGTCACTCGTGAACTGGTTGAATGGCGTTGTCTCAAACAGTTTCTAAACCATCTACTATTCACCTGCCCATCTCCTCTTCCCAtcactcctcccttcctcctccagacCTCCAAGATGGTCCGAGTTCACAACACCCAGTACTCCCTCTTCCTGCGCCAGGCAGATGTCCTGCGTCGCTCGGGGACGCTGTGTGATGCTGTCATCTCAGTGGAGAGCCAGGTGTTCAGGGCCCATCGGCTGGTGCTGGCCTGCGCTAGCAAAACCCTGGAGCATCAGCTCACCCTGCAGGCTGCATACTCAGACCAGCCTGATCACCTCGACCAACCTTACCACTGTAGTCTGGAGCTCCTCTCTCCACAAACATTCCAGCAGGTCCTGGACTTTGCCTACACCGAGACCCTGGAGGTCCCTGTGGATGATCTGCCCCAGCTTCTGAGGGCCGCCAAGCTCCTGGAGATGCATTCCCTGGAGGAGCAGTGTCGCAGCCAGCTGAAGAGAAATCGGGGGTGCCtgacgagagagagaagagagttgaGAGAAATAAGAGTGAGAGGAACAAAAGAAACTAGAGAAATGACAGAAACGAGAGAACTTCagataacagaggagagagatgagaaagaatTCCTGAAAGGAAGTCACATTCCAGAAGAGGGGGATCCCCAGACAATTCCCTCCATTGATCTGGAGCCCCAGAGCAGCCCATTCACTGAGGACCCCACTCTTCCTGACACTAGGGATAACACCTCTGGTTCATCACCCCCACAGAGAAAAAGGCCAAAGCCACTCACACCCACACTAGTGACCACCACACCGCCTCCATCCAGAGACAGTGTCATCGCCACCACTGCTGCCACCATCCAaccccatccccctcctcccccagcgTCGAGGGTCACGTGGCACCAAGTCAACACCCTGAGGAGGATGGCCTTGAACTATAACGACATCCTAGCAGCCAGTTCTTCTTCCCTTCAACCCTCACAGCACCTGGTGACATACCCTTtccacctctccactcctcacatGTACCCCCTGCTAATGTCCTCCATCCCGCCCCAGGTCCACAGCGCCGTCCTGGGCTACCCTGGTATCCTGCATCCATACCACCACCCCCTGCTCTCTGGGTCTCAGGAGCTGGGGGACATCCTGACGCAAGGTTTGCTGGGAAAAAGAGACCCGATGGATAAAGTGTTGATAGGTGGAGCACCAGGGGAAGGGCAAAGATACTCCCAGGAGCGTCCAGGAAGAACCCAGGACTGTCAGCACTGCAGCAAGGTCCCcctgggcagctcatggctgcAGGCCTCAACCACCTACCCCTCAGGCCCAGGTGAGACTTCTCTGGGGTGTAAGTACTGTGATCGTGGCTTCAGGGTGGAGCGGTCACTGCCGTCCCACCGACGAGATCAGGGAGGAGAGAAGCCCTACCAGTGTAATCGCTGCTCCAAGAGGTTCAGCCTCAAACACCAACTGGATACACACCACCGGGTACACACAGGAGAGAAGCCTTTTGAGTGCCGTCTGTGTGGCCAGCGGTCAAGGGACTACTCAGCCATGATCAAGCACCTGCGGACCCACGGCGGGGCCACACCCTACCAGTGTACTGTCTGCCTGGAGTTCTGTAGCAGCCTGGCTGCCATGCAGAAACACCTGAAGAACCACCCGCTGCAGGACTTTCCCCCAGACTGGACCATCAGCAGCACCTACCTGTACACATGCCATACCTGAACTAGCTTGAAGGCAAATGTAATGTCAATAGAGAATAATTTTACTACCAAACAACTACATCTCAGGGAAACTAACTCATAGAATGTAATGTACATACATGGTAACAAGACACCAGTTACCGTAGCATTTATCCATGTACTCCAAAAGTGCATGGAGTACGTCAATGCATAGTTCCACCACTAGAAGGACACTGGGTCTCAGAAAAGAATGTAAAACATGTCTAGCACCAGCAGCATTATCATTATCAAGCACAGTATTATTACCATTCTATCGTGGCTGCAGCTGAAGTCAGTCACTTAcaagagacaaggaaaggaaacaTCAAGACTATTTAGAGGCAGCAAAAAATGTGTCCTTGTTTCATATGAATGTGTCCATCTATGTTTGGCCGTTATCTCTCTCAAGAAGACTTGGGGCAAtcgttttgtgcacaaatttttGATTTTCATTTAGTCATGTGTGTTTAGTACATTTAGATGTTGTTTGAttcatatttacagtgcctttagaGTCTGCACCTCCAGGATTTTTTCCCCACGTTCTTTTGCGTTTCAAAGTGGgatagaaatatattttttttttttaatcattcagctacacaaaatagtccctaatgtcaaagtgaaacGAAAATTCTACacgtttttacaaattaataacaaTTAAATTATTAAAATATAGTAGCTGCAGAAGTACTCACACCCTTTGTTTAGCAAAGCCTAAATGAAGTAAAATTGtgtcttaacaaatcacataagttaTATGGACTCCCTCTGTGTGAAATAACAGGGAttgacatgattttttaatgactacccctTCCTCTGTTCTCCATACATAGaacatatgtaaggtccctcagccaagtattgaatttcaaactcagattcaaccacaaagaccagggagctttttgaaagcctcataaagaagacCAGTGATTGGCAGATGGGTagcaataacaaatcagacattgaatatatctttaagcatggtcaaattAATAATTGTGCTGTGGAtcatgtattaaaccacccagacacatcaaagatgcagTCATCCTTCTGATCTGAGCTGCAGGACATTAAGGAAACTGCTTAGGGTTGTTATTATGATGCCATTGGGGATTTTAAAACaactacagagttcaatggctgtgatggaagaaaactgaggatggatcaacaacattgtagtgactccacaataatgacctaaaagacagagtgagaagaagaatataaatatacagaatacaaataatccaaaacatgcataaaggcactaaagtaatactttttggcctaaatgcaaagtcTTATAATTATCTAATCAAGGTATATTAgtgtttaattttttattaatacaaaaaatacaaaaatcttccactttgatattagAATATTTTGTGGAAGCCGTTGAcctaaaaaatacaattaaatccatttgaatcccactttgtaacaccataaaatgtgaagaaatccaagggggtgTAGACTTTTTACAGGTGTTGTATATGTGCTTTAGCCTGTTGCTATTTTAATGATAGTATTGTTATAATCAATGTACTAGTTTAGCAGATGGCCTGTTTTGGTACTGAATGTAGATCCTCACACAGTCACACCCAACCACAAAGAAACAATAGCCTGTCAAACCTTTATGATATGAGACCATTGATTTGCTCTGAACTTGAGTGTGAATACATTTTGGCATAAATTACACAGCAGCTGGCATGCAGTGTGTATTTGCAATTAGTATCTCTTCAGAgaataaatgttttaaata

Function

NR:

description
PREDICTED: zinc finger and BTB domain-containing protein 32-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942732.1 False 3647 mRNA 0.45 5 23393669 23405134
XM_036942736.1 True 3594 mRNA 0.46 5 23393669 23405426

Neighbor

gene id symbol gene type direction distance location
igflr1 tm149 coding downstream 13901 23374879 ~ 23379768 (-)
LOC110538355 LOC106577931 coding downstream 111818 23279116 ~ 23281851 (-)
hspb6 hspb6l coding downstream 114884 23276038 ~ 23278785 (-)
LOC110538325 lin37 coding downstream 126610 23262463 ~ 23267059 (-)
LOC110538290 LOC106605611 coding downstream 159901 23224489 ~ 23233768 (-)
LOC110538371 NA coding upstream 14873 23420299 ~ 23445208 (-)
LOC110538151 LOC106577862 coding upstream 51314 23456740 ~ 23520468 (-)
LOC110538403 LOC106605622 coding upstream 153996 23559422 ~ 23607871 (-)
LOC110538540 LOC106605662 coding upstream 482589 23888015 ~ 23897552 (-)
LOC110533695 NA coding upstream 679017 24084443 ~ 24091464 (-)
G123662 NA non-coding downstream 27746 23264303 ~ 23365923 (-)
G123656 NA non-coding downstream 138415 23252782 ~ 23255254 (-)
G123660 NA non-coding downstream 141003 23252405 ~ 23252666 (-)
G123647 LOC106605609 non-coding downstream 156780 23236354 ~ 23236889 (-)
G123821 NA non-coding upstream 148773 23554199 ~ 23554769 (-)
G123822 NA non-coding upstream 149566 23554992 ~ 23555203 (-)
G123859 NA non-coding upstream 219276 23624702 ~ 23624901 (-)
G123863 NA non-coding upstream 221318 23626744 ~ 23627011 (-)
G123882 NA non-coding upstream 245876 23651302 ~ 23651533 (-)
G123435 NA other downstream 194417 23185640 ~ 23199252 (-)
G123308 NA other downstream 387857 23004986 ~ 23005812 (-)
G122972 NA other downstream 1015509 22376153 ~ 22378160 (-)
LOC110537842 NA other downstream 1236135 22120579 ~ 22157534 (-)
G124840 NA other upstream 498413 23903839 ~ 23904677 (-)
LOC110538705 LOC106577653 other upstream 753741 24144519 ~ 24172836 (-)
G125003 NA other upstream 863800 24269226 ~ 24270136 (-)
G125043 NA other upstream 919154 24324580 ~ 24324836 (-)
LOC110538887 LOC106605647 other upstream 1126236 24531424 ~ 24540898 (-)

Expression


Co-expression Network