LOC110538371


Basic Information

Item Value
gene id LOC110538371
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23420299 ~ 23445208 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475740.2
ACCCAGCATACCTCCAGCAGAAGGATTGGCCTGCTAGAGTTGTAACATTTGCTAACATGAGTACACATTGCATACAATGGTCCTAGGCTACACTAATGGTCACGTTCCAAGCCCTATGCCTGTAAAGTGATTTGAACGCCAATCGGCTACACTCCGATACTGTACCTGCACCACGAATATGACATCGTTTTTCCTCTATATAACCATTATATTTGTTACGCTACTTGGGCGTACCTATAATGGTTTGGAAGAGAACCATAAACCAACCACTGAATTAAATTGTAATGACGGTCCTAGACACATATGTAATAACACAGATTGTAGCTGGACTGGCTTCTTGAAAGACGTTGTATTTGATTGCCCGCTTGATAATGACAAGTTTCAATGTTCAGTGGAGACGGATGAAGTAAAGAAAAACCAGGAAGAACAACAAACAGTACCAGTGGCACCGATATGCAAAGACAATAGAAGCTGTGGATTCCCTACAACATTTGTCGGTGAAAGTGTAAGATGCACCATACATATGCAAATACAGCCACCAATAACATCAAGAGGACCAGAAAAGATGGAAGATGGAAAAGGTTTGGAAGAGAACCATAAACCAACCACTGAATTAAATTGTAATGACGGTCCTAGACACATATGTACTAACACAGATTGTAGCTGGACTGGCTTCTTGAAAGACGTTGTATTTGATTGCCCGCTTGATAATGACAAGTTTCAATGTTCAGTGGAGACGGATGAAGTAAAGAAAAACCAGGAAGAACAACAAACAGTACCAGTGGCACCGATATGCAAAGACAATAGAAGCTGTGGATTCCCTACAACATTTGTCGGTGAAAGTGTAAGATGCACCATACATATGCAAACACAACTACCAGCAACATCAAGAGAACCAGACAATCTGAAGAATGAAACAGAGCCAAAACACAATATACCCTGGTGGATTTGGTTAATCATTTGCCTTTGCCTTTGGCATTAGCGTTGGCATTGGTGTTGGGATTTGGATTAATCGATGTCAGAAGAAAAAGGATTCATTTGAGACACGTGATGAGGCGTATATAGAAGTGGATGGAATGGTATAAAAAACGAATGAGGTGGTATTATTGCAGGGGTTAACCTATGGGTGCACTAGTATGAGCCATCATCAGCCAGCAGGCTATTTTAATACTAATCTCATTGGGGTAAattaataaaatgttttaaaagataaATCAAATCTGCATGGATTAGTGTTTGCCATCATGTGTGATGCAGTGATAAAACACCTGAAAGAATGCCTACATTaacatacagtaccggtcaaaagtttggagacacctactcattccagggtttttcttaatcttttactattttatacattgtagagtaatagtaaagaagacat
>XR_002475741.2
ACCCAGCATACCTCCAGCAGAAGGATTGGCCTGCTAGAGTTGTAACATTTGCTAACATGAGTACACATTGCATACAATGGTCCTAGGCTACACTAATGGTCACGTTCCAAGCCCTATGCCTGTAAAGTGATTTGAACGCCAATCGGCTACACTCCGATACTGTACCTGCACCACGAATATGACATCGTTTTTCCTCTATATAACCATTATATTTGTTACGCTACTTGGGCGTACCTATAATGGTTTGGAAGAGAACCATAAACCAACCACTGAATTAAATTGTAATGACGGTCCTAGACACATATGTAATAACACAGATTGTAGCTGGACTGGCTTCTTGAAAGACGTTGTATTTGATTGCCCGCTTGATAATGACAAGTTTCAATGTTCAGTGGAGACGGATGAAGTAAAGAAAAACCAGGAAGAACAACAAACAGTACCAGTGGCACCGATATGCAAAGACAATAGAAGCTGTGGATTCCCTACAACATTTGTCGGTGAAAGTGTAAGATGCACCATACATATGCAAATACAGCCACCAATAACATCAAGAGGACCAGAAAAGATGGAAGATGGAAAAGGTTTGGAAGAGAACCATAAACCAACCACTGAATTAAATTGTAATGACGGTCCTAGACACATATGTACTAACACAGATTGTAGCTGGACTGGCTTCTTGAAAGACGTTGTATTTGATTGCCCGCTTGATAATGACAAGTTTCAATGTTCAGTGGAGACGGATGAAGTAAAGAAAAACCAGGAAGAACAACAAACAGTACCAGTGGCACCGATATGCAAAGACAATAGAAGCTGTGGATTCCCTACAACATTTGTCGGTGAAAGTGTAAGATGCACCATACATATGCAAACACAACTACCAGCAACATCAAGAGAACCAGACAATCTGAAGAATGAAACAGAGCCAAAACACAATATACCCTGGTGGATTTGGTTAATCATTTGCCTTTGCCTTTGGCATTAGCGTTGGCATTGGTGTTGGGATTTGGATTAATCGATGTCAGAAAAAGGATTCATTTGAGACACGTGATGAGGCGTATATAGAAGTGGATGGAATGGTATAAAAAACGAATGAGGTGGTATTATTGCAGGGGTTAACCTATGGGTGCACTAGTATGAGCCATCATCAGCCAGCAGGCTATTTTAATACTAATCTCATTGGGGTAAattaataaaatgttttaaaagataaATCAAATCTGCATGGATTAGTGTTTGCCATCATGTGTGATGCAGTGATAAAACACCTGAAAGAATGCCTACATTaacatacagtaccggtcaaaagtttggagacacctactcattccagggtttttcttaatcttttactattttatacattgtagagtaatagtaaagaagacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475740.2 False 1390 mRNA 0.39 11 23420299 23445208
XR_002475741.2 True 1387 mRNA 0.40 11 23420299 23445208

Neighbor

gene id symbol gene type direction distance location
LOC110538238 LOC106605616 coding downstream 14873 23393669 ~ 23405426 (-)
igflr1 tm149 coding downstream 40531 23374879 ~ 23379768 (-)
LOC110538355 LOC106577931 coding downstream 138448 23279116 ~ 23281851 (-)
hspb6 hspb6l coding downstream 141514 23276038 ~ 23278785 (-)
LOC110538325 lin37 coding downstream 153240 23262463 ~ 23267059 (-)
LOC110538151 LOC106577862 coding upstream 11532 23456740 ~ 23520468 (-)
LOC110538403 LOC106605622 coding upstream 114214 23559422 ~ 23607871 (-)
LOC110538540 LOC106605662 coding upstream 442807 23888015 ~ 23897552 (-)
LOC110533695 NA coding upstream 639235 24084443 ~ 24091464 (-)
LOC110538681 LOC106605635 coding upstream 679746 24124948 ~ 24131603 (-)
G123662 NA non-coding downstream 54376 23264303 ~ 23365923 (-)
G123656 NA non-coding downstream 165045 23252782 ~ 23255254 (-)
G123660 NA non-coding downstream 167633 23252405 ~ 23252666 (-)
G123647 LOC106605609 non-coding downstream 183410 23236354 ~ 23236889 (-)
LOC110538290 LOC106605611 non-coding downstream 187804 23224489 ~ 23233768 (-)
G123821 NA non-coding upstream 108991 23554199 ~ 23554769 (-)
G123822 NA non-coding upstream 109784 23554992 ~ 23555203 (-)
G123859 NA non-coding upstream 179494 23624702 ~ 23624901 (-)
G123863 NA non-coding upstream 181536 23626744 ~ 23627011 (-)
G123882 NA non-coding upstream 206094 23651302 ~ 23651533 (-)
G123435 NA other downstream 221047 23185640 ~ 23199252 (-)
G123308 NA other downstream 414487 23004986 ~ 23005812 (-)
G122972 NA other downstream 1042139 22376153 ~ 22378160 (-)
LOC110537842 NA other downstream 1262765 22120579 ~ 22157534 (-)
G124840 NA other upstream 458631 23903839 ~ 23904677 (-)
LOC110538705 LOC106577653 other upstream 713959 24144519 ~ 24172836 (-)
G125003 NA other upstream 824018 24269226 ~ 24270136 (-)
G125043 NA other upstream 879372 24324580 ~ 24324836 (-)
LOC110538887 LOC106605647 other upstream 1086454 24531424 ~ 24540898 (-)

Expression


Co-expression Network