LOC110538497 (LOC106605627)


Basic Information

Item Value
gene id LOC110538497
gene name LOC106605627
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23861576 ~ 23881639 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942997.1
CACTCGTGTCCCCCATGGACCGGCTCGTAGTTGTACATAAAGCATCATCAAAGGTGACATGGATCTCTCTCTGTTGGTGGCATTCTGCTCCTGTGTTCCTCCTGCTTTGGCATTGACGATGGATGAAAAAGACTATGACGCTGCGTTTCACTACGACTATGAATCACTGAGGATCGGTGGACTGATCTTCGCTGTGGTACTGTTTGTCATGGGCATTGTCCTCATCGTCAgCCGGAAATGCCCATGCAAATCAAGTCCGAAGTCACGGCCTGCTGGAGTAccggaggcagaggcaggggctCTGACAAGTCCCAAGTGATGTGAAGTCTCGCCACCAGGCGGCAGCATCGGACTGTAGAGTGCTACTATGGCCGTCTCCCAGAGCACGAGGCTCCTTTTTTAAAATTCCATCCTGCTGATATGTTCTCTTGGCATCTTTTTTTGCTTTTCTCTTTTTCTATATGAATGAATCTACAGCGACAGTATTTTGAGGACATAATTGGTTGATGCAGTAGGGTTGTTTAATTGTAGGCTATATATTACACCTGTCATACGTGGTAGACACATTATTAACAAGCGATTTTGTAAGTTAGAACTTGACTGACTATTTTAAATTGTAATATTTCCACACTGAAATAAAGTGATGTACATGGGTAA
>XM_021625402.2
AGTAGCAGGGTAATTCTGGAGGGCAGGTTGCATTTCTTCTCAGaccaacccctaaccccctccccctTCTTTCCCTCGCCAGACGCTAAAATATATCCGACCACGAAAACTTTGCTGGATGTTTCAGGAGAAACATTTCAGGACCAGATTTGCATTAATTTCTGTACATTAAGTACGCTCATTAAATCGTGTTTTATCAGTTTTGCAAAAGCGGACTTTTTGTGTCGATAAATTAGAACACTAGAAACATTGTTTCTGAAGGAGCGGAGGCAAGGCAGCGACCTAAGCGTTTTTATTATTCATCTAATCTCCACAGTCACCTATTTTCCATTAATTGGACTTCTGACAGGTGACATGGATCTCTCTCTGTTGGTGGCATTCTGCTCCTGTGTTCCTCCTGCTTTGGCATTGACGATGGATGAAAAAGACTATGACGCTGCGTTTCACTACGACTATGAATCACTGAGGATCGGTGGACTGATCTTCGCTGTGGTACTGTTTGTCATGGGCATTGTCCTCATCGTCAgCCGGAAATGCCCATGCAAATCAAGTCCGAAGTCACGGCCTGCTGGAGTAccggaggcagaggcaggggctCTGACAAGTCCCAAGTGATGTGAAGTCTCGCCACCAGGCGGCAGCATCGGACTGTAGAGTGCTACTATGGCCGTCTCCCAGAGCACGAGGCTCCTTTTTTAAAATTCCATCCTGCTGATATGTTCTCTTGGCATCTTTTTTTGCTTTTCTCTTTTTCTATATGAATGAATCTACAGCGACAGTATTTTGAGGACATAATTGGTTGATGCAGTAGGGTTGTTTAATTGTAGGCTATATATTACACCTGTCATACGTGGTAGACACATTATTAACAAGCGATTTTGTAAGTTAGAACTTGACTGACTATTTTAAATTGTAATATTTCCACACTGAAATAAAGTGATGTACATGGGTAA
>XM_036942981.1
AGCAGGGTAATTCTGGAGGGCAGGTTGCATTTCTTCTCAGaccaacccctaaccccctccccctTCTTTCCCTCGCCAGACGCTAAAATATATCCGACCACGAAAACTTTGCTGGATGTTTCAGGAGAAACATTTCAGGACCAGATTTGCATTAATTTCTGTACATTAAGTACGCTCATTAAATCGTGTTTTATCAGTTTTGCAAAAGCGGACTTTTTGTGTCGATAAATTAGAACACTAGAAACATTGTTTCTGAAGGAGCGGAGGCAAGGCAGCGACCTAAGCGTTTTTATTATTCATCTAATCTCCACAGTCACCTATTTTCCATTAATTGGACTTCTGACAGGTGACATGGATCTCTCTCTGTTGGTGGCATTCTGCTCCTGTGTTCCTCCTGCTTTGGGGTCATCTATAGGCAGGGACATGCCAGCATTGACGATGGATGAAAAAGACTATGACGCTGCGTTTCACTACGACTATGAATCACTGAGGATCGGTGGACTGATCTTCGCTGTGGTACTGTTTGTCATGGGCATTGTCCTCATCGTCAgCCGGAAATGCCCATGCAAATCAAGTCCGAAGTCACGGCCTGCTGGAGTAccggaggcagaggcaggggctCTGACAAGTCCCAAGTGATGTGAAGTCTCGCCACCAGGCGGCAGCATCGGACTGTAGAGTGCTACTATGGCCGTCTCCCAGAGCACGAGGCTCCTTTTTTAAAATTCCATCCTGCTGATATGTTCTCTTGGCATCTTTTTTTGCTTTTCTCTTTTTCTATATGAATGAATCTACAGCGACAGTATTTTGAGGACATAATTGGTTGATGCAGTAGGGTTGTTTAATTGTAGGCTATATATTACACCTGTCATACGTGGTAGACACATTATTAACAAGCGATTTTGTAAGTTAGAACTTGACTGACTATTTTAAATTGTAATATTTCCACACTGAAATAAAGTGATGTACATGGGTAA
>XM_021625379.2
GCAGGGTAATTCTGGAGGGCAGGTTGCATTTCTTCTCAGaccaacccctaaccccctccccctTCTTTCCCTCGCCAGACGCTAAAATATATCCGACCACGAAAACTTTGCTGGATGTTTCAGGAGAAACATTTCAGGACCAGATTTGCATTAATTTCTGTACATTAAGTACGCTCATTAAATCGTGTTTTATCAGTTTTGCAAAAGCGGACTTTTTGTGTCGATAAATTAGAACACTAGAAACATTGTTTCTGAAGGAGCGGAGGCAAGGCAGCGACCTAAGCGTTTTTATTATTCATCTAATCTCCACAGTCACCTATTTTCCATTAATTGGACTTCTGACAGGTGACATGGATCTCTCTCTGTTGGTGGCATTCTGCTCCTGTGTTCCTCCTGCTTTGGGGTCAGGATTTGGCAGAGAGATGCCAGGGTCATCTATAGGCAGGGACATGCCAGCATTGACGATGGATGAAAAAGACTATGACGCTGCGTTTCACTACGACTATGAATCACTGAGGATCGGTGGACTGATCTTCGCTGTGGTACTGTTTGTCATGGGCATTGTCCTCATCGTCAgCCGGAAATGCCCATGCAAATCAAGTCCGAAGTCACGGCCTGCTGGAGTAccggaggcagaggcaggggctCTGACAAGTCCCAAGTGATGTGAAGTCTCGCCACCAGGCGGCAGCATCGGACTGTAGAGTGCTACTATGGCCGTCTCCCAGAGCACGAGGCTCCTTTTTTAAAATTCCATCCTGCTGATATGTTCTCTTGGCATCTTTTTTTGCTTTTCTCTTTTTCTATATGAATGAATCTACAGCGACAGTATTTTGAGGACATAATTGGTTGATGCAGTAGGGTTGTTTAATTGTAGGCTATATATTACACCTGTCATACGTGGTAGACACATTATTAACAAGCGATTTTGTAAGTTAGAACTTGACTGACTATTTTAAATTGTAATATTTCCACACTGAAATAAAGTGATGTACATGGGTAA
>XM_021625393.2
CAGGGTAATTCTGGAGGGCAGGTTGCATTTCTTCTCAGaccaacccctaaccccctccccctTCTTTCCCTCGCCAGACGCTAAAATATATCCGACCACGAAAACTTTGCTGGATGTTTCAGGAGAAACATTTCAGGACCAGATTTGCATTAATTTCTGTACATTAAGTACGCTCATTAAATCGTGTTTTATCAGTTTTGCAAAAGCGGACTTTTTGTGTCGATAAATTAGAACACTAGAAACATTGTTTCTGAAGGAGCGGAGGCAAGGCAGCGACCTAAGCGTTTTTATTATTCATCTAATCTCCACAGTCACCTATTTTCCATTAATTGGACTTCTGACAGGTGACATGGATCTCTCTCTGTTGGTGGCATTCTGCTCCTGTGTTCCTCCTGCTTTGGGGTCAGGATTTGGCAGAGAGATGCCAGCATTGACGATGGATGAAAAAGACTATGACGCTGCGTTTCACTACGACTATGAATCACTGAGGATCGGTGGACTGATCTTCGCTGTGGTACTGTTTGTCATGGGCATTGTCCTCATCGTCAgCCGGAAATGCCCATGCAAATCAAGTCCGAAGTCACGGCCTGCTGGAGTAccggaggcagaggcaggggctCTGACAAGTCCCAAGTGATGTGAAGTCTCGCCACCAGGCGGCAGCATCGGACTGTAGAGTGCTACTATGGCCGTCTCCCAGAGCACGAGGCTCCTTTTTTAAAATTCCATCCTGCTGATATGTTCTCTTGGCATCTTTTTTTGCTTTTCTCTTTTTCTATATGAATGAATCTACAGCGACAGTATTTTGAGGACATAATTGGTTGATGCAGTAGGGTTGTTTAATTGTAGGCTATATATTACACCTGTCATACGTGGTAGACACATTATTAACAAGCGATTTTGTAAGTTAGAACTTGACTGACTATTTTAAATTGTAATATTTCCACACTGAAATAAAGTGATGTACATGGGTAA
>TU143245
TCTTTCCCTCGCCAGACGCTAAAATATATCCGACCACGAAAACTTTGCTGGATGTTTCAGGAGAAACATTTCAGGACCAGATTTGCATTAATTTCTGTACATTAAGTACGCTCATTAAATCGTGTTTTATCAGTTTTGCAAAAGCGGACTTTTTGTGTCGATAAATTAGAACACTAGAAACATTGTTTCTGAAGGAGCGGAGGCAAGGCAGCGACCTAAGCGTTTTTATTATTCATCTAATCTCCACAGTCACCTATTTTCCATTAATTGGACTTCTGACAGGTGACATGGATCTCTCTCTGTTGGTGGCATTCTGCTCCTGTGTTCCTCCTGCTTTGGCATTGACGATGGATGAAAAAGACTATGACGCTGCGTTTCACTACGACTATGAATCACTGAGGATCGGTGGACTGATCTTCGCTGTGGTACTGTTTGTCATGGGCATTGTCCTCATCGTCAgCCGGAAATGCCCATGCAAATCAAGTCCGAAGTCACGGCCTGCTGGAGTAccggaggcagaggcaggggctCTGACAAGTCCCAAGTGATGTGAAGTCTCGCCACCAGGCGGCAGCATCGGACTGTAGAGTGCTACTATGGCCGTCTCCCAGAGCACGAGGCTCCTTTTTTAAAATTCCATCCTGCTGATATGTTCTCTTGGCATCTTTTTTTGCTTTTCTCTTTTTCTATATGAATGAATCTACAGCGACAGTATTTTGAGGACATAATTGGTTGATGCAGTAGGGTTGTTTAATTGTAGGCTATATATTACACCTGTCATACGTGGTAGACACATTATTAACAAGCGATTTTGTAAGTTAGAACTTGACTGACTATTTTAAATTGTAATATTTCCACACTGAAATAAAGTGATGTACATGGG
>TU143247
TCTTTCCCTCGCCAGACGCTAAAATATATCCGACCACGAAAACTTTGCTGGATGTTTCAGGAGAAACATTTCAGGACCAGATTTGCATTAATTTCTGTACATTAAGTACGCTCATTAAATCGTGTTTTATCAGTTTTGCAAAAGCGGACTTTTTGTGTCGATAAATTAGAACACTAGAAACATTGTTTCTGAAGGAGCGGAGGCAAGGCAGCGACCTAAGCGTTTTTATTATTCATCTAATCTCCACAGTCACCTATTTTCCATTAATTGGACTTCTGACAGGTGACATGGATCTCTCTCTGTTGGTGGCATTCTGCTCCTGTGTTCCTCCTGCTTTGGGGTCAGGATTTGGCAGAGAGATGCCAGCATTGACGATGGATGAAAAAGACTATGACGCTGCGTTTCACTACGACTATGAATCACTGAGGATCGGTGGACTGATCTTCGCTGTGGTACTGTTTGTCATGGGCATTGTCCTCATCGTCAgCCGGAAATGCCCATGCAAATCAAGTCCGAAGTCACGGCCTGCTGGAGTAccggaggcagaggcaggggctCTGACAAGTCCCAAGTGATGTGAAGTCTCGCCACCAGGCGGCAGCATCGGACTGTAGAGTGCTACTATGGCCGTCTCCCAGAGCACGAGGCTCCTTTTTTAAAATTCCATCCTGCTGATATGTTCTCTTGGCATCTTTTTTTGCTTTTCTCTTTTTCTATATGAATGAATCTACAGCGACAGTATTTTGAGGACATAATTGGTTGATGCAGTAGGGTTGTTTAATTGTAGGCTATATATTACACCTGTCATACGTGGTAGACACATTATTAACAAGCGATTTTGTAAGTTAGAACTTGACTGACTATTTTAAATTGTAATATTTCCACACTGAAATAAAGTGATGTACATGGG

Function

NR:

description
FXYD domain-containing ion transport regulator 6-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942997.1 False 657 mRNA 0.45 8 23861576 23881639
XM_021625402.2 False 953 mRNA 0.44 8 23861850 23881639
XM_036942981.1 False 977 mRNA 0.44 9 23861853 23881639
XM_021625379.2 False 1003 mRNA 0.44 10 23861854 23881639
XM_021625393.2 False 975 mRNA 0.44 9 23861855 23881639
TU143245 False 883 TUCP 0.50 8 23861917 23881636
TU143247 True 910 TUCP 0.43 9 23861917 23881636

Neighbor

gene id symbol gene type direction distance location
LOC110538480 NA coding upstream 12260 23837837 ~ 23849316 (+)
LOC110538452 fxyd5b coding upstream 65726 23772587 ~ 23795850 (+)
nphs1 LOC106605624 coding upstream 102358 23699019 ~ 23759218 (+)
zmp:0000001114 LOC106605621 coding upstream 309239 23520890 ~ 23552337 (+)
LOC110538396 NA coding upstream 432083 23427269 ~ 23429493 (+)
LOC110538531 NA coding downstream 3016 23882624 ~ 23887290 (+)
LOC110538544 LOC106605665 coding downstream 42929 23924568 ~ 23937034 (+)
LOC110538566 LOC106605629 coding downstream 65134 23946773 ~ 23969314 (+)
LOC110538617 NA coding downstream 88771 23970410 ~ 23974958 (+)
LOC110538573 fxyd9b coding downstream 102680 23984319 ~ 23997362 (+)
G123938 NA non-coding upstream 81558 23752549 ~ 23780018 (+)
G123907 NA non-coding upstream 182750 23678587 ~ 23678826 (+)
G123881 NA non-coding upstream 210087 23651264 ~ 23651489 (+)
G123858 NA non-coding upstream 237060 23624316 ~ 23624516 (+)
G123616 LOC106605622 non-coding upstream 297114 23562087 ~ 23564462 (+)
G124017 NA non-coding downstream 10214 23891853 ~ 23892087 (+)
G124023 NA non-coding downstream 19631 23901270 ~ 23901553 (+)
G124024 NA non-coding downstream 21264 23902903 ~ 23903138 (+)
G124049 NA non-coding downstream 99187 23980826 ~ 23984060 (+)
G123980 NA other upstream 36074 23824693 ~ 23825502 (+)
G122459 LOC106578191 other upstream 1050313 22810767 ~ 22811263 (+)
apoc4 NA other upstream 1511640 22348543 ~ 22349936 (+)
LOC110537939 apoc1 other upstream 1514961 22342491 ~ 22346615 (+)
G122030 NA other upstream 1842761 22015130 ~ 22018815 (+)
G124121 LOC106605585 other downstream 265222 24146861 ~ 24148593 (+)
LOC110538915 LOC106605649 other downstream 659365 24540963 ~ 24544247 (+)
G124451 LOC106578403 other downstream 991412 24873051 ~ 24873834 (+)
LOC110534557 LOC106605501 other downstream 1495845 25377221 ~ 25396334 (+)
G125934 NA other downstream 1801241 25682880 ~ 25757853 (+)

Expression


Co-expression Network