LOC110538540 (LOC106605662)


Basic Information

Item Value
gene id LOC110538540
gene name LOC106605662
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23888015 ~ 23897552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625427.2
AGTCACATCATACAAGTCTGACACGTCGAGAAAGGACCAGGAACCGCTGCGAATTCAAACCCTGAAGAAGAGACCAGAGGAGCTGACAAGGTGTTACAAAGAAAAAGGGATTCTGACATGCACTGGCAGAAATCACCGAAGGAGAAGCCGTGTTACACTCTTCCCACAGTGAAGAAACTCCTGgagcagaagaggaagagggagacctCCTCGACGGCAACAACCAGTACCGGTGTCCCCACTGCCACTGTCCTCTCCCAACAGGTGTCAACACCAGAGAAGTCTACCTCAACAGGTGTAGCCAGCAGCTACTCAGACATGGCAGTGGGGTATGAGAGATGGGGTCCTATGGATGAGCACCAAGCCCTCTCGGCCATACATGAAGGTCCATTCTCCCCTATGGGGAACAATTACTTCTCCAGCCCATCCTCCTCAATGGACTACAGCCAAACTCCGGCCTACAGCACTCAGATGGCCTCCAGCTACAGCACACAGCAGATTCAGGACTACTCAGACACCAGGATGCCCCAGTGTTATACGGAGTGTCCAGTGACCGAGGCTGTGTCTAGTTTGGTTCCTTCAGGGCCCCTGCAGTCTGCTGTCTTCTCCTGGTCATCGGGGGCCCTGGGCCCCACAGAGCTTGTCCAGCAGGTGTTTAGTGGCCAGATGGATGTCATTAAGCTGGAGGAAGCCAGGATGTTCCTCAGAGGGATGGACTACAGCAGAACCACCTGGCAGGATGACGACGGAGACacGATTCTGCACATCTACACAGCCAAGGGCCTGAGGGAGTATGCATTTGCTGCAGCAGAGAGGCTTGCTGAGCTGGGCAAGCTAGACTCCAAGGAACACAAGGGGAAGTCTGCTTTGCTGGTGGCGGTGACTGCTAACCATCCAGAAATCGTCCAGGATCTGTTGTCTTTAGGAGCGGATATAAATGCCTGTGATGTCAAAGGTCAAACAGCACTTCATCTTGCTGCCACCTATGGCTTCCCCAGGGTTATGCAGGTTATTCTCTCCATTGGGCCTGGAGTGAACCTGGAGGCTCGCAATTTTGAAGGTCTGACTCCTCTGCACTGTGCAGCCATCTCTCACAGTGACACCATgaagactctctcctccctctcctccaccggGCTGGGTGATGCCAGCCTCCATGCCCTGGCAGAGGAGAAGCTCTCCTGGCTGCAGATGCTACTCAACACTGGAGCCTCCCTGACCAGCCAGGAAATCAAAAGTAACAAGACTGTTCTTCACCTGGCTGTGAAGGAGGGGAACATCCAGCTGGTTCGCCATCTGCTGAAGACCCCCCTAGACAACATGAGGGACTTTGTCAACATGAAGGCCCATGGTCATACTGCGCTGCACATGGCTGCTGGTCTCCATGGCAGCCCACACCAAGAGGAGATGCTGAGGCTGCTGCTGGGCCGAGGGGCCGACCCCAGCATCCGCAACCTGGAGAACGACCAGCCTGCACACCTGCTGCAGAGTGGACCCCACGGGGAACAGCTCAAGCTCATCCTGAAGAAGAGAAGTGCTTCCTCTCGTCGACGTGTAATGTCCTTACAGGACCAATAGTGACCCGGACTACTTTTTATGTCCCTGTGTATCCCTCCACCTCTTTTCAGAGGAAGTACTGAAGGTCTGCACTGTAGGTTGAATCCAGACATCTGTACTTCCAAGAGGGAGGGATTCTAGCGTATCTTCATGTGAGGATTTTCAAACACGGCAAATCTCTAATATATACTAGGGCATTCACTTTGAAACTATATGTTTGATTGACATGATTTTGGTCACTATCTGAATTCAGTTCTGAATTTAATAATGGCTAGCTAGTAATGAGCAATGGTAACAGGTGGTATTCCAGTCCCCCCTGATATTACTGTCACTCAGTACAACCTTGATTTCTATGAAATCGTTTACATTATATTCAAAGCTGCACAGACTCATTGTGTGAGTACCCCCCAGCCGGGAAGCCCTCTTTAGAGGTATATCTGAGGAGGGTTTCTGGGCTCCCACCCCCACTCATTCTCTTGTCAAAACTTCCCACCATGGTCAGAAATCATATTGGTTTGTTGAAAGGTGGTTGTTGTTTCACTAAGCATGTGACACAGTGTACCATTGTGCTCATGCTTTCAATGTCTTTTATaacttaactaggtctttctttttATATTTGATATACTCACAGCGCTCATTGAATAGCTAACATattgtcagtggtggaaaaagtactcaaaaatcatacttgaataaaagtaaagataccttaatagaaaatgactcaagtaaaagtgaa

Function

NR:

description
NF-kappa-B inhibitor delta

GO: NA

KEGG:

id description
K14214 NFKBID; NF-kappa-B inhibitor delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625427.2 True 2299 mRNA 0.50 11 23888015 23897552

Neighbor

gene id symbol gene type direction distance location
LOC110538403 LOC106605622 coding downstream 280144 23559422 ~ 23607871 (-)
LOC110538151 LOC106577862 coding downstream 367547 23456740 ~ 23520468 (-)
LOC110538371 NA coding downstream 442807 23420299 ~ 23445208 (-)
LOC110538238 LOC106605616 coding downstream 482589 23393669 ~ 23405426 (-)
igflr1 tm149 coding downstream 508247 23374879 ~ 23379768 (-)
LOC110533695 NA coding upstream 186891 24084443 ~ 24091464 (-)
LOC110538681 LOC106605635 coding upstream 227402 24124948 ~ 24131603 (-)
LOC118938710 LOC106605635 coding upstream 241294 24138846 ~ 24139668 (-)
LOC110538705 LOC106577653 coding upstream 246967 24144519 ~ 24172836 (-)
LOC110538717 LOC106578554 coding upstream 280971 24178523 ~ 24184172 (-)
G124775 NA non-coding downstream 6379 23879727 ~ 23881636 (-)
G123902 NA non-coding downstream 212712 23675086 ~ 23675303 (-)
G123882 NA non-coding downstream 236482 23651302 ~ 23651533 (-)
G123863 NA non-coding downstream 261004 23626744 ~ 23627011 (-)
G123859 NA non-coding downstream 263114 23624702 ~ 23624901 (-)
G124839 NA non-coding upstream 5403 23902955 ~ 23903302 (-)
G124864 LOC106605631 non-coding upstream 53430 23950982 ~ 24015924 (-)
G124870 NA non-coding upstream 119354 24016906 ~ 24018403 (-)
G124865 NA non-coding upstream 120928 24018480 ~ 24019217 (-)
G124891 NA non-coding upstream 123246 24020798 ~ 24021962 (-)
LOC110538355 LOC106577931 other downstream 606217 23279116 ~ 23281851 (-)
G123435 NA other downstream 688763 23185640 ~ 23199252 (-)
G123308 NA other downstream 882203 23004986 ~ 23005812 (-)
G122972 NA other downstream 1509855 22376153 ~ 22378160 (-)
LOC110537842 NA other downstream 1730481 22120579 ~ 22157534 (-)
G124840 NA other upstream 6287 23903839 ~ 23904677 (-)
G125003 NA other upstream 371674 24269226 ~ 24270136 (-)
G125043 NA other upstream 427028 24324580 ~ 24324836 (-)
LOC110538887 LOC106605647 other upstream 634110 24531424 ~ 24540898 (-)

Expression


Co-expression Network