LOC100136301 (LOC106605632)


Basic Information

Item Value
gene id LOC100136301
gene name LOC106605632
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24041681 ~ 24054664 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943049.1
ACACAGCAGTGATGCCAATGTGGAGTGTGTCACCATCACACCTTTTAGCAGTCTGAGGTACAAATACTGTTGGTGATTTTACTGTGAGGAACGTTCCTAGTGAGGATATAAAGACGCTTCCAAGATTTCGGGGGGAGAGAGGACTGAGCGTTGGACTTCAATTGATTTGGGCAGGCCCTCCACCATGAGTAAAGGGGACTCTTACGACATGTTTGAGATGAATGGAGAGGTGGACGTCAAgatgaagaaaaagaagaagataaAGAAAAAGGATAGGCTAGAGGGCATGAAGAAGGAGATGGACATTGATGACCACGAGATCACAATAGAAGAGCTAGAGATGAGGTATACCACCAGTGTTACCAAGGGCCTGACGTCCAGCAAAGCAGCGGAGGTTCTGGAGCGGGACGGCCCCAACGAACTGCTGCCCCCCAAAGGGACCCCAGAGTACGTCAAATTTGCTCGTCAGCTGGCCGGAGGGCTGCAGTGTCTGATGTGGGTGGCAGCCGTCATCTGCTTCATTGCTTTCGGCATCGAGTTCTCCAGGGGAACCCTCGGCTGCTTTGACGATCTGTACCTCGCCATCACTCTGATCACTGTTGTTGTGGTGACTGGCTGTTTCGGTTACTACCAAGAGTTTAAGAGCACCAACATCATCGCCAGCTTCAAAAATCTAGTGCCACAGCAAGCCCTGGTGATCCGTGACGGGCAGAAGAACCAGATCAATGCCATGGACCTGGTGGTGGGCGACCTGGTGGAGATCAAGGGTGGTGACCGCGTGCCTGCTGACATCCGCATCATCTTTGCCCAGGGCTGTAAGgTGGATAACTCATCCCTGACAGGAGAGTCAGAGCCCCAGAGCAAAACCCCGGAGTGTACCCACGAGAACCCCCTAGAGACTAAGAACATTGCCTTCTTCTCCACCACCTGCCTGGAAGGAGTGGCCACAGGAACGGTCATCAACACGGGTGACCGCACCATCATTGGCCGCATTGCCAGCTTGGCGTCAGGCGTAGGCAATGAGAAGACGCCAATTGCCATAGAGATTGAGCACTTTGTTGACATCATTGCTGGGCTGGCCATCTTCTTTGGCTTCACCTTCTTTGTGGTGGCCATGTTTATCGGCTATGCCTTCCTGGAGGCTATGATCTTCTTCATGGCCATCGTGGTGGCCTATGTACCTGAGGGGCTGCTGGCTACTGTCACTgtgTGTCTGTCGCTGACGGCCAAGCGTCTGGCCAGGAAGAACTGTGTGGTGAAGAACCTGGAGGCTGTGGAGACCCTGGGCTCCACCTCGGTCATCTGCTCCGACAAGACGGGCACTCTGACCCAGAACAGGATGACCGTGGCCCACCTGTGGTTCGACAATGTGATCCATGCCGCAGACACCACAGAGGACCAATCAGGTCAGAGCTTTGACCAATCATCCGAGACATGGCGATCGTTGGCAAGAGTGGCAGGACTCTGTAACCGGGCCATCTTCAAACCCAACCAGGAGTCTCTGCCTATTCCTAGGAGAATAGTGGTGGGCGACGCCTCAGAGACGGCTCTGCTGAAGTTCACTGAGCTGGCCATAGGGAACATGATGGAATACAGGGAACGCTTCAAAAAGGTTGTTGAAGTACCATTCAACTCCACCAACAAGTTCCAGCTGTCAGTGCATGAGTTGGAAGACCCCATGGACCTGCGCTACCTGCTGGTGATGAAGGGGGCGCCAGAGAGGATCTTGGAGCGCTGCTCCACCATCCTGATCAGGGGCCAGGAGATGCCCCTGGATGAACAGTGGAGAGAGGCCTTCCAGACTGCATACATGGACTTGGGGAGCCTGGGGGAGAGAGTGCTGGGTTTCTGTCACATCTATCTAAATGAGAATGAGTTCCCTCGTGGTTACAAGTTTGACTCCGATGAGATGAACTTCACCACGTCTGGTTTGTGTTTCGCTGGACTCATCTCCATGATCGACCCGCCCCGCGCCACTGTGCCTGACGCTGTCATGAAATGTCGCACGGCTGGAATAAGGGTAGTCATGGTGACAGGCGACCACCCGATCACGGCCAGAGCCATCGCTGCGAACGTTGGCATCATCACAGAGGGCAGTGAGACAGTAGAGGACATCGCTACCAGGAAACGCATCCCAGTGGAGCAGGTCAACAGGAGGGATGCCCGTGCCTGTGTGATCAGTGGTGGTCAGCTGAAGGACATGAGCAGTGAAGAGCTGGACGAAGCGTTGAGGAGTCACCCTGAAATGGTGTTCGCCCGCACCTCCCCCCAGCAGAAACTCATCATCGTGGAGAGCTGTCAGCGCCtgGGCTCCATTGTGGCTGTGACAGGCGATGGGGTGAACGACTCCCCTGCGTTGAAAAAGGCAGACATCGGTATTGCCATGGGCATAGCTGGCTCCGATGCAGCTAAGAATGCAGCTGACATGATTCTGCTGGATGACAACTTTGCCTCCATCGTCACAGGGGTGGAGCAGGGCCGTCTGATCTTTGACAACCTGAAGAAGTCTATTGCGTACACACTGACCAAGAACATTCCGGAGCTCACACCCTACCTCATCTACATCACTGTCAGTGTTCCTCTGCCATTGGGCTGCATCACCATCCTCATGATTGAGCTGGCCACTGACATTTTTCCCTCTGTGTCTCTGGCCTATGAGAAGGCTGAGAGTGATATTATGCATCTGAAACCCAGGAACCCGCGTAAGGATAGGTTGGTGAACGAATCTCTGGCTGCCTACTCCTACTTCCAGATTGGCGCAATCCAGTCTTTCGCTGGTTTCACAGACTACTTTACAGCGATGGCCCAGGAGGGCTGGTATCCCCTGCTGTGTGTGGGGCTCAGGTCCCACTGGGAGGACGTCCATCTGCAGGACCTGCAGGACAGCTATGGCCaggagtggACATACGCCCAGCGTCTGTATCAGCAGTACACCTGCTACACTGTCTTCTTCATCAGTATTGAGATCTGCCAGATTGCTGATGTGTTGATCAGGAAAACCCGCCGTCTGTCCATCTTCCAGCAGGGCTTCTTTAGGAACAAGGTGCTGGTGAGTGCCATCGTCTTCCAGCTGTTACTGGGTAACCTGCTGTGCTACTGCCCAGGGATGCCAAACATTTTCAACTTCATGCCCattagGGGCCAATGGTGGTTCGTTCCAATCCCGTACGGAATTCTAATCTTTGTCTATGACGAGATCAGGAAGCTGGGGGTCAGAAGACATCCAGGAAGTTGGTGGGACCAGGAGCTGTATTATTGAGAGAAGAGGGCATATATCTAGACCAGAGACATAGGTATAAAGATGCAGGTTAGCATTTTccatcatgaatcttgttctggaggcagctctgctctgcagtggtcactagctggcacagccacaaagtcataaaatcagattttaattataaccctaacccaaactttAACCACACTAGCAAATggctaaccctaaacttaaattAAGAccgaaaaacacatttttgttttcattattttttacaatatacccaatttgactttgcagctggcctaagAGGAAATTTCTCAGTTATGCCTCTAGGACAAGACTCATGActataaacgtcaacctgctatACAGAGAAGTCTGGATAGCAAACTGTCCTCCATCTTGGTCCCAAACATtccattacaatacaatacaatacaatttaaATATCAAACAAGGTTTGCCAAACTCTGTACAAGTATAGCTCTGAATATCCTTAACCATTTCTGATATGGAACCAAATCTTATACATTGAAACAATAACCATGAATTATTTTGTGATATGTTTGTAAAGACACACCTCCATGTTCTAATACAAAAAAATAGAATGCTTGATGTGAGTTTGTCATATCAATTTGAATTTGGAATCATTTCCTTTTGTAAATGTAGTATGTGGATGTCTGTGGGTGATTGCCTTTTGTTTCTGAATTCCATTGCCTTTTTATGTATAACATCACACATATTTGCCGTCAAGGGTTCTTTCTTGGTGATAATGTTGgtagtacagtagcctatatgcattgtatttatgtatttgtaTTAATAAAGTGTGTCAAATATAA
>XM_036943054.1
CACACCTTTTAGCAGTCTGAGGTACAAATACTTGAGGATATAAAGACGCTTCCAAGATTTCGGGGGGAGAGAGGACTGAGCGTTGGACTTCAATTGATTTGGGCAGGCCCTCCACCATGAGTAAAGGGGACTCTTACGACATGTTTGAGATGAATGGAGAGGTGGACGTCAAgatgaagaaaaagaagaagataaAGAAAAAGGATAGGCTAGAGGGCATGAAGAAGGAGATGGACATTGATGACCACGAGATCACAATAGAAGAGCTAGAGATGAGGTATACCACCAGTGTTACCAAGGGCCTGACGTCCAGCAAAGCAGCGGAGGTTCTGGAGCGGGACGGCCCCAACGAACTGCTGCCCCCCAAAGGGACCCCAGAGTACGTCAAATTTGCTCGTCAGCTGGCCGGAGGGCTGCAGTGTCTGATGTGGGTGGCAGCCGTCATCTGCTTCATTGCTTTCGGCATCGAGTTCTCCAGGGGAACCCTCGGCTGCTTTGACGATCTGTACCTCGCCATCACTCTGATCACTGTTGTTGTGGTGACTGGCTGTTTCGGTTACTACCAAGAGTTTAAGAGCACCAACATCATCGCCAGCTTCAAAAATCTAGTGCCACAGCAAGCCCTGGTGATCCGTGACGGGCAGAAGAACCAGATCAATGCCATGGACCTGGTGGTGGGCGACCTGGTGGAGATCAAGGGTGGTGACCGCGTGCCTGCTGACATCCGCATCATCTTTGCCCAGGGCTGTAAGgTGGATAACTCATCCCTGACAGGAGAGTCAGAGCCCCAGAGCAAAACCCCGGAGTGTACCCACGAGAACCCCCTAGAGACTAAGAACATTGCCTTCTTCTCCACCACCTGCCTGGAAGGAGTGGCCACAGGAACGGTCATCAACACGGGTGACCGCACCATCATTGGCCGCATTGCCAGCTTGGCGTCAGGCGTAGGCAATGAGAAGACGCCAATTGCCATAGAGATTGAGCACTTTGTTGACATCATTGCTGGGCTGGCCATCTTCTTTGGCTTCACCTTCTTTGTGGTGGCCATGTTTATCGGCTATGCCTTCCTGGAGGCTATGATCTTCTTCATGGCCATCGTGGTGGCCTATGTACCTGAGGGGCTGCTGGCTACTGTCACTgtgTGTCTGTCGCTGACGGCCAAGCGTCTGGCCAGGAAGAACTGTGTGGTGAAGAACCTGGAGGCTGTGGAGACCCTGGGCTCCACCTCGGTCATCTGCTCCGACAAGACGGGCACTCTGACCCAGAACAGGATGACCGTGGCCCACCTGTGGTTCGACAATGTGATCCATGCCGCAGACACCACAGAGGACCAATCAGGTCAGAGCTTTGACCAATCATCCGAGACATGGCGATCGTTGGCAAGAGTGGCAGGACTCTGTAACCGGGCCATCTTCAAACCCAACCAGGAGTCTCTGCCTATTCCTAGGAGAATAGTGGTGGGCGACGCCTCAGAGACGGCTCTGCTGAAGTTCACTGAGCTGGCCATAGGGAACATGATGGAATACAGGGAACGCTTCAAAAAGGTTGTTGAAGTACCATTCAACTCCACCAACAAGTTCCAGCTGTCAGTGCATGAGTTGGAAGACCCCATGGACCTGCGCTACCTGCTGGTGATGAAGGGGGCGCCAGAGAGGATCTTGGAGCGCTGCTCCACCATCCTGATCAGGGGCCAGGAGATGCCCCTGGATGAACAGTGGAGAGAGGCCTTCCAGACTGCATACATGGACTTGGGGAGCCTGGGGGAGAGAGTGCTGGGTTTCTGTCACATCTATCTAAATGAGAATGAGTTCCCTCGTGGTTACAAGTTTGACTCCGATGAGATGAACTTCACCACGTCTGGTTTGTGTTTCGCTGGACTCATCTCCATGATCGACCCGCCCCGCGCCACTGTGCCTGACGCTGTCATGAAATGTCGCACGGCTGGAATAAGGGTAGTCATGGTGACAGGCGACCACCCGATCACGGCCAGAGCCATCGCTGCGAACGTTGGCATCATCACAGAGGGCAGTGAGACAGTAGAGGACATCGCTACCAGGAAACGCATCCCAGTGGAGCAGGTCAACAGGAGGGATGCCCGTGCCTGTGTGATCAGTGGTGGTCAGCTGAAGGACATGAGCAGTGAAGAGCTGGACGAAGCGTTGAGGAGTCACCCTGAAATGGTGTTCGCCCGCACCTCCCCCCAGCAGAAACTCATCATCGTGGAGAGCTGTCAGCGCCtgGGCTCCATTGTGGCTGTGACAGGCGATGGGGTGAACGACTCCCCTGCGTTGAAAAAGGCAGACATCGGTATTGCCATGGGCATAGCTGGCTCCGATGCAGCTAAGAATGCAGCTGACATGATTCTGCTGGATGACAACTTTGCCTCCATCGTCACAGGGGTGGAGCAGGGCCGTCTGATCTTTGACAACCTGAAGAAGTCTATTGCGTACACACTGACCAAGAACATTCCGGAGCTCACACCCTACCTCATCTACATCACTGTCAGTGTTCCTCTGCCATTGGGCTGCATCACCATCCTCATGATTGAGCTGGCCACTGACATTTTTCCCTCTGTGTCTCTGGCCTATGAGAAGGCTGAGAGTGATATTATGCATCTGAAACCCAGGAACCCGCGTAAGGATAGGTTGGTGAACGAATCTCTGGCTGCCTACTCCTACTTCCAGATTGGCGCAATCCAGTCTTTCGCTGGTTTCACAGACTACTTTACAGCGATGGCCCAGGAGGGCTGGTATCCCCTGCTGTGTGTGGGGCTCAGGTCCCACTGGGAGGACGTCCATCTGCAGGACCTGCAGGACAGCTATGGCCaggagtggACATACGCCCAGCGTCTGTATCAGCAGTACACCTGCTACACTGTCTTCTTCATCAGTATTGAGATCTGCCAGATTGCTGATGTGTTGATCAGGAAAACCCGCCGTCTGTCCATCTTCCAGCAGGGCTTCTTTAGGAACAAGGTGCTGGTGAGTGCCATCGTCTTCCAGCTGTTACTGGGTAACCTGCTGTGCTACTGCCCAGGGATGCCAAACATTTTCAACTTCATGCCCattagGGGCCAATGGTGGTTCGTTCCAATCCCGTACGGAATTCTAATCTTTGTCTATGACGAGATCAGGAAGCTGGGGGTCAGAAGACATCCAGGAAGTTGGTGGGACCAGGAGCTGTATTATTGAGAGAAGAGGGCATATATCTAGACCAGAGACATAGGTATAAAGATGCAGGTTAGCATTTTccatcatgaatcttgttctggaggcagctctgctctgcagtggtcactagctggcacagccacaaagtcataaaatcagattttaattataaccctaacccaaactttAACCACACTAGCAAATggctaaccctaaacttaaattAAGAccgaaaaacacatttttgttttcattattttttacaatatacccaatttgactttgcagctggcctaagAGGAAATTTCTCAGTTATGCCTCTAGGACAAGACTCATGActataaacgtcaacctgctatACAGAGAAGTCTGGATAGCAAACTGTCCTCCATCTTGGTCCCAAACATtccattacaatacaatacaatacaatttaaATATCAAACAAGGTTTGCCAAACTCTGTACAAGTATAGCTCTGAATATCCTTAACCATTTCTGATATGGAACCAAATCTTATACATTGAAACAATAACCATGAATTATTTTGTGATATGTTTGTAAAGACACACCTCCATGTTCTAATACAAAAAAATAGAATGCTTGATGTGAGTTTGTCATATCAATTTGAATTTGGAATCATTTCCTTTTGTAAATGTAGTATGTGGATGTCTGTGGGTGATTGCCTTTTGTTTCTGAATTCCATTGCCTTTTTATGTATAACATCACACATATTTGCCGTCAAGGGTTCTTTCTTGGTGATAATGTTGgtagtacagtagcctatatgcattgtatttatgtatttgtaTTAATAAAGTGTGTCAAATATAA

Function

NR:

description
PREDICTED: potassium-transporting ATPase alpha chain 1-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01542 ATP4A; H+/K+-exchanging ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943049.1 False 4071 mRNA 0.50 23 24041681 24054664
XM_036943054.1 True 4003 mRNA 0.50 23 24041717 24054664

Neighbor

gene id symbol gene type direction distance location
LOC110538629 LOC106605631 coding upstream 25737 24001565 ~ 24015944 (+)
LOC110538573 fxyd9b coding upstream 44319 23984319 ~ 23997362 (+)
LOC110538617 NA coding upstream 66723 23970410 ~ 23974958 (+)
LOC110538566 LOC106605629 coding upstream 72367 23946773 ~ 23969314 (+)
LOC110538544 LOC106605665 coding upstream 104647 23924568 ~ 23937034 (+)
LOC100135863 LOC106577739 coding downstream 14705 24069369 ~ 24076225 (+)
tmem147 LOC106605633 coding downstream 23011 24077675 ~ 24081015 (+)
LOC110538661 LOC106605634 coding downstream 51980 24106644 ~ 24124814 (+)
LOC110538727 LOC106605639 coding downstream 136226 24190890 ~ 24200234 (+)
LOC110538747 LOC106578439 coding downstream 146435 24201099 ~ 24238678 (+)
G124080 NA non-coding upstream 14026 24027437 ~ 24027655 (+)
G124079 NA non-coding upstream 15592 24025804 ~ 24026089 (+)
G124069 NA non-coding upstream 50847 23988981 ~ 23990834 (+)
G124049 NA non-coding upstream 57621 23980826 ~ 23984060 (+)
G124024 NA non-coding upstream 138543 23902903 ~ 23903138 (+)
G124087 NA non-coding downstream 1159 24055823 ~ 24056120 (+)
G124113 NA non-coding downstream 60783 24115447 ~ 24115658 (+)
G124115 NA non-coding downstream 62568 24117232 ~ 24117456 (+)
G124119 NA non-coding downstream 74934 24129598 ~ 24129956 (+)
G124122 LOC106578386 non-coding downstream 91402 24146066 ~ 24146722 (+)
LOC110538497 LOC106605627 other upstream 160045 23861576 ~ 23881639 (+)
G123980 NA other upstream 216179 23824693 ~ 23825502 (+)
G122459 LOC106578191 other upstream 1230418 22810767 ~ 22811263 (+)
apoc4 NA other upstream 1691745 22348543 ~ 22349936 (+)
LOC110537939 apoc1 other upstream 1695066 22342491 ~ 22346615 (+)
G124121 LOC106605585 other downstream 92197 24146861 ~ 24148593 (+)
LOC110538915 LOC106605649 other downstream 486340 24540963 ~ 24544247 (+)
G124451 LOC106578403 other downstream 818387 24873051 ~ 24873834 (+)
LOC110534557 LOC106605501 other downstream 1322820 25377221 ~ 25396334 (+)
G125934 NA other downstream 1628216 25682880 ~ 25757853 (+)

Expression


Co-expression Network