LOC100135863 (LOC106577739)


Basic Information

Item Value
gene id LOC100135863
gene name LOC106577739
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24069369 ~ 24076225 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124246.1
GTTCACCACTACAACCCAATCAACAGCAACTATGTCAGACCTCTGTGTTGGAATCAACGGATTTGGCCGTATTGGCCGCCTGGTCCTCAGGGCCTGCCTGCAGAAGGGAATCAAAGTCGTTGCCATCAACGATCCCTTCATCGACCTGCAGTACATGGTTTACATGTTCAAGTATGACTCCACCCACGGCCGTTACAAGGGTGAGGTGAGCATGGAGGACGGGAAGCTGATTGTGGATGACCACTCCATCTCCGTATTCCAGTGTATGAAGCCCCATGAGATCCCATGGGGTAAAGCCGGTGCCGATTACGTCGTTGAGTCCACCGGAGTCTTCCTCAGCATTGACAAGGCCTCTTCCCACATCCAGGGTGGTGCCAAGCGGGTGGTTGTGTCCGCCCCCTCACCTGACGCCCCCATGTTCGTCATGGGAGTCAACGAGGACAAGTACGACCCCTCCAGCATGACCATCGTCAGTAATGCATCTTGCACGACTAACTGCCTGGCCCCCCTGGCTAAGGTCATCCACGACAACTTCGGCATCGAGGAGGCCCTCATGACCACAGTCCACGCCTACACCGCCACCCAAAAGACGGTGGACGGCCCCTCTGCCAAGGCATGGCGCGATGGCCGTGGTGCCCACCAGAACATCATCCCTGCCTCCACCGGAGCTGCCAAGGCTGTGGGCAAGGTCATCCCTGAGCTCAACGGcaagCTGACTGGCATGGCCTTCCGTGTGCCCGTGGCTGACGTATCAGTGGTGGACCTAACCTGCCGCCTGTCCCGGCCTGGCAGCTACGCTGAGATCAAGGCGGCTGTCAAGAAGGCCGCCGAAGGACCCATGAAGGGATACCTGGGATACACTGAGGACTCTGTTGTGTCTTCTGACTTCATTGGCGACACCCACTCCTCCATCTTTGATGCTGGCGCTGGCATCTCCCTCAACGACAACTTTGTCAAACTCATTTCCTGGTATGACAATGAGTTTGGCTACAGCCACCGTGTCGCTGACCTGTTGCTGTACATGCATTCTAAGGAGTAACTGTCCGGCTCCAGAAAGCTGCAATGGGACCCACCCCCCTTTTACATGCACTCACACCCTCCAGTGTCACACCCCTAGTACCCCCAGCCCTCCACCACTCTCTACAACACAACTTAGTCTCTGTAGTAGGCTGTGTGTACAAGTATTTGTTTTTTCCTTTATGAGAGTCCCACTGAGACGTTTTTGACTTGACAGTATGTGTTCCCAGAACATTGCTGTGATGTTTCCATACTGGCTGTTACCATGTAATATTGGTGTTAAAATAATTCTAGTTTAAGAGTCAAGTGAGAAAGACAAGCTACTGTAACTAAAAAAGTAATAAATCTTTACAAATGTC

Function

NR:

description
glyceraldehyde-3-phosphate dehydrogenase-like

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0006096 glycolytic process biological_process
GO:0035606 peptidyl-cysteine S-trans-nitrosylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0050821 protein stabilization biological_process
GO:0005829 cytosol cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0050661 NADP binding molecular_function
GO:0035605 peptidyl-cysteine S-nitrosylase activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0008017 microtubule binding molecular_function
GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity molecular_function

KEGG:

id description
K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124246.1 True 1376 mRNA 0.53 10 24069369 24076225

Neighbor

gene id symbol gene type direction distance location
LOC100136301 LOC106605632 coding upstream 14705 24041681 ~ 24054664 (+)
LOC110538629 LOC106605631 coding upstream 53425 24001565 ~ 24015944 (+)
LOC110538573 fxyd9b coding upstream 72007 23984319 ~ 23997362 (+)
LOC110538617 NA coding upstream 94411 23970410 ~ 23974958 (+)
LOC110538566 LOC106605629 coding upstream 100055 23946773 ~ 23969314 (+)
tmem147 LOC106605633 coding downstream 1450 24077675 ~ 24081015 (+)
LOC110538661 LOC106605634 coding downstream 30419 24106644 ~ 24124814 (+)
LOC110538727 LOC106605639 coding downstream 114665 24190890 ~ 24200234 (+)
LOC110538747 LOC106578439 coding downstream 124874 24201099 ~ 24238678 (+)
LOC110538776 LOC106605668 coding downstream 184163 24260388 ~ 24270406 (+)
G124087 NA non-coding upstream 13249 24055823 ~ 24056120 (+)
G124080 NA non-coding upstream 41714 24027437 ~ 24027655 (+)
G124079 NA non-coding upstream 43280 24025804 ~ 24026089 (+)
G124069 NA non-coding upstream 78535 23988981 ~ 23990834 (+)
G124049 NA non-coding upstream 85309 23980826 ~ 23984060 (+)
G124113 NA non-coding downstream 39222 24115447 ~ 24115658 (+)
G124115 NA non-coding downstream 41007 24117232 ~ 24117456 (+)
G124119 NA non-coding downstream 53373 24129598 ~ 24129956 (+)
G124122 LOC106578386 non-coding downstream 69841 24146066 ~ 24146722 (+)
G124124 LOC106605585 non-coding downstream 72868 24149093 ~ 24154800 (+)
LOC110538497 LOC106605627 other upstream 187733 23861576 ~ 23881639 (+)
G123980 NA other upstream 243867 23824693 ~ 23825502 (+)
G122459 LOC106578191 other upstream 1258106 22810767 ~ 22811263 (+)
apoc4 NA other upstream 1719433 22348543 ~ 22349936 (+)
LOC110537939 apoc1 other upstream 1722754 22342491 ~ 22346615 (+)
G124121 LOC106605585 other downstream 70636 24146861 ~ 24148593 (+)
LOC110538915 LOC106605649 other downstream 464779 24540963 ~ 24544247 (+)
G124451 LOC106578403 other downstream 796826 24873051 ~ 24873834 (+)
LOC110534557 LOC106605501 other downstream 1301259 25377221 ~ 25396334 (+)
G125934 NA other downstream 1606655 25682880 ~ 25757853 (+)

Expression


Co-expression Network