LOC110533695



Basic Information


Item Value
gene id LOC110533695
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24084443 ~ 24091464 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XR_002475018.2
TAACATCCTAAACACCAAAGCGTGCCATAAACTAACTTTCTAGCTAGATTAGGCTTGTTTGTTAACCTCTAGGGTAGTTGCAGGAAATATGTGCAACGTATTTCAAGACGTCACTACAAGACAACCAAGGACTTTAGCTGGGGGCCAGTTTGCCGGGATCCAGAAAAAGACATGGAGCTCTGGAGTGATGGATTGCTGTGTCGACAGAGATGTCTGTCTCTGTGGGTTTTTCTGTCCATGCATTCAGGCCATTAAAATggcagagaaatacggagagtgtTTCCTACTCTCTCATGTTCCATGGACACATTTTATGTTGCGAACCAGCATTCGGGAGCGGTATAACATAGAGGGAACCATTTGCGATGACTGGTGTGTGACTGCTTTCTGCGGACCTTGTGTTCAATGCCAAATGGTTCGTGAAGTCAATAAGGAGATTCCTAACTGACAGAGCCGCAAAGTGTTGTCTCCCGCACCTTGTTATGAAAATGTTAATTAAATTGTTGCAGTGAGGACCCTCAAGTTTTTGTACAACAAACTTCTTATGGTTACATTAGGACTGCTGTCATCTGAAGACTATGCCTGCAAGTCAACAAACTTTTTATGTTCCTCTGACTATACAGCACTATGTGAGCACAACCCTTTATCTAAATCCTCAGCAGTAAGAAAAAACAAGACACAGTACCATGTGACTGTCAGATGTATACAATGTGCAATATAACTTATAGTATTTTACTATTTATGATAAGTATGTTATTACCAGATTATGGCTAATTTAAATGTATTCAACTACCAGTTGTTTAtatgaaaatacatttgaaataagTACTACACAAGAATAGTTCAGAAATGAAATTATTGTTTTTTAACTTTTTGGATTATGTGTgaattgctagatattactgcactgttggagctggaaacataagcatttcgctgcacctgcgataacatctgcagaTCTGTAttatgcgaccaataaactttgatttgaaagtC
>XR_005035947.1
GGTACCTTCTGTTCAATGTGCCTAGCCTGTCAGATGGCTGAGAGGTATGGTGAATGcttctgtctccccctgctgccAACAACTATGATGATGATGCGCACAtcaatgagagagagatacaacaTCCCGGGTAGTTGCAGGAAATATGTGCAACGTATTTCAAGACGTCACTACAAGACAACCAAGGACTTTAGCTGGGGGCCAGTTTGCCGGGATCCAGAAAAAGACATGGAGCTCTGGAGTGATGGATTGCTGTGTCGACAGAGATGTCTGTCTCTGTGGGTTTTTCTGTCCATGCATTCAGGCCATTAAAATggcagagaaatacggagagtgtTTCCTACTCTCTCATGTTCCATGGACACATTTTATGTTGCGAACCAGCATTCGGGAGCGGTATAACATAGAGGGAACCATTTGCGATGACTGGTGTGTGACTGCTTTCTGCGGACCTTGTGTTCAATGCCAAATGGTTCGTGAAGTCAATAAGGAGATTCCTAACTGACAGAGCCGCAAAGTGTTGTCTCCCGCACCTTGTTATGAAAATGTTAATTAAATTGTTGCAGTGAGGACCCTCAAGTTTTTGTACAACAAACTTCTTATGGTTACATTAGGACTGCTGTCATCTGAAGACTATGCCTGCAAGTCAACAAACTTTTTATGTTCCTCTGACTATACAGCACTATGTGAGCACAACCCTTTATCTAAATCCTCAGCAGTAAGAAAAAACAAGACACAGTACCATGTGACTGTCAGATGTATACAATGTGCAATATAACTTATAGTATTTTACTATTTATGATAAGTATGTTATTACCAGATTATGGCTAATTTAAATGTATTCAACTACCAGTTGTTTAtatgaaaatacatttgaaataagTACTACACAAGAATAGTTCAGAAATGAAATTATTGTTTTTTAACTTTTTGGATTATGTGTgaattgctagatattactgcactgttggagctggaaacataagcatttcgctgcacctgcgataacatctgcagaTCTGTAttatgcgaccaataaactttgatttgaaagtC

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_002475018.2 False 999 mRNA 0.39 4 24084443 24090618
XR_005035947.1 True 1056 mRNA 0.40 4 24084443 24091464

Neighbor


gene id symbol gene type direction distance location
LOC110538540 LOC106605662 coding downstream 186891 23888015 ~ 23897552 (-)
LOC110538403 LOC106605622 coding downstream 476572 23559422 ~ 23607871 (-)
LOC110538151 LOC106577862 coding downstream 563975 23456740 ~ 23520468 (-)
LOC110538371 NA coding downstream 639235 23420299 ~ 23445208 (-)
LOC110538238 LOC106605616 coding downstream 679017 23393669 ~ 23405426 (-)
LOC110538681 LOC106605635 coding upstream 33490 24124948 ~ 24131603 (-)
LOC118938710 LOC106605635 coding upstream 47382 24138846 ~ 24139668 (-)
LOC110538705 LOC106577653 coding upstream 53055 24144519 ~ 24172836 (-)
LOC110538717 LOC106578554 coding upstream 87059 24178523 ~ 24184172 (-)
LOC110538767 LOC106605667 coding upstream 158398 24249862 ~ 24253101 (-)
G124912 NA non-coding downstream 1672 24082446 ~ 24082771 (-)
G124863 LOC106577739 non-coding downstream 7347 24072761 ~ 24077096 (-)
G124901 NA non-coding downstream 43185 24040927 ~ 24041258 (-)
G124896 NA non-coding downstream 57759 24026275 ~ 24026684 (-)
G124893 NA non-coding downstream 59155 24024979 ~ 24025288 (-)
G124932 NA non-coding upstream 19235 24110699 ~ 24111581 (-)
G124936 NA non-coding upstream 22210 24113674 ~ 24114494 (-)
G124935 NA non-coding upstream 28227 24119691 ~ 24120068 (-)
G124947 NA non-coding upstream 37953 24129417 ~ 24129687 (-)
G124840 NA other downstream 179766 23903839 ~ 23904677 (-)
LOC110538355 LOC106577931 other downstream 802645 23279116 ~ 23281851 (-)
G123435 NA other downstream 885191 23185640 ~ 23199252 (-)
G123308 NA other downstream 1078631 23004986 ~ 23005812 (-)
G122972 NA other downstream 1706283 22376153 ~ 22378160 (-)
G125003 NA other upstream 177762 24269226 ~ 24270136 (-)
G125043 NA other upstream 233116 24324580 ~ 24324836 (-)
LOC110538887 LOC106605647 other upstream 440198 24531424 ~ 24540898 (-)
G125305 NA other upstream 683756 24775220 ~ 24776627 (-)

Expression



Co-expression Network