LOC110538661 (LOC106605634)


Basic Information

Item Value
gene id LOC110538661
gene name LOC106605634
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24106644 ~ 24124814 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625630.2
GAAACacatgtttccaccactgttgtATTTCGCGCGCAATTGCATGCAGCAGGTGTCAAGGACTACATCGATCCATTCATTGAGGATAGTGACAACGTTGAGGTAGAAATGGCTGAATCGATGCTCATCTTGAGAATGTGTTCCATAATATCGGTCCTTGGTTTTTCAGAGGCCAAAATGGAAATCATCACCAGCAAAGCAGATGTGTTGCTAGGTGAGAATGCCATGCTCCACTGCAAAGctggtggggaaggagacatCACCTGGCAGAAAGATGGAGAGGATGCTGAAGATGACCAGGTTGAGAAAGTGGATGAAACATCGTCAAAACTGTTCATCAGGAATGCCAAGATAGAGGATGCAGGACGGTACACATGCCTCTGTGAATTTGACACAGGCCACAGAGATTATGTATCTTATGCCATCTTTGTCTATGAGCCGCCATCCTTTGGGCAAACACCGACCAACCATGAGTTCCTGGAGGGTCAAGATGTGGTCATCACCTGCGTGGTCACTGGCAAGCCGGCGGTGGAAGTCAACTGGGAGAGGGACCATCAGAAACTGCACTCTGACGGTCGGATCACAAGATTGAAAGACAACTCCCTACAGATCAACAACATCAGCAGGAAGGATCGCGGATCATATACCTGTGAGGCTAAAATCAAGGACCGGCCCATTTTCAAAAAGCTCAACATCTCCATCTCTGTCAACGTTCCTCCCACAGTGAAGATCCATGAGGAGGTGAAGAAAGTCATGGCCGGACCAGAGACCAATGTCTCCCTCAGCTGCCTGGTCGAGGGAGTCCCCCAACCGAACATCATCTGGAcaatCCCAGACTCTTCAGATGAGTCCCGCTACAAGTACAACTCAGACAAGAGCGAGCTGATTATCTCGTCCGTTGTCAGGAGCGACTACGGAGAGTACATCTGCACGGCCAAGAATAAGATCGCAGAGAGCAGTGCCATGATCATGCTGGATGTCTCAGAGCATCCTGTAGCAGTGCTGAGCCAGGAGAAGATGAAGGTGGAGCCAGGCCAGACTCTCTCAGTGTCCTGTAACGTCTCAGGACACCCTATTCCCGCGCTGCAGTGGGTCAGGAAGATCAACAATGACCACCTGCTAACAGTGGACACTGGTGGAGGTCGAGTGAGAATGGAGGATGGCTATGTCCTGGTCGTTGACAATGTGACGTCCTCAGATGGAGGGCTGTACAGCTGCATGGCTATCAGTCCTGCTGGCAACGCCTCCACAGACTTCAGCCTGCAGAcctggccAGGCAAAGCATCCCAGGTAAGTGGCACCCCAGGGCCTACATCGGTCCACTTCACCCTGGGGGCTTCCCTGGTGGACGGGGGCTCTCCCATCACCCACTTCACCCTCCAGTGGAAGACAGGACGTGAGAACAATTGGCAGGAGAGAGTCATCCAGTCCACAGACCCCCTGGTTATCACAGATCTGATTCCCTACACCTCCTACTCTGTCCGGTTTGCCCCTCGGAACCACCTGGGTCAGGGTGGCTTCTCAGACGAGCTCACAGTACGCACACAGGGCATACGAGGGGAACCAGACAGCCCGGTCCTGGTGGCCAGCGAGGGGAAGTTTGAGGGCAATATGTTCTCAATCCCTTTAACACAGTTGGACAGCGGAGGCTCCCCCATTATCCACTACATTGTCCGTTACAGAGTGAATAAGATGGACGAGGACTGGAGGGTGAAGGACCTGCCGTCCAACATGACAGTGATCAACCTCCATGACCTGCAGTGTAAATCAGACTACCACATGGAGGTGCTAGCCGTCAACTCCTACGGCTCCTCCAGCCCAGCCAAGCTGAACTTCAATGTCCCACAACCTGTAGCCAAGATGAATAAGGGTGGGATGGGGAAAGGGGCCGTGGCAGGTATTGTCATGCTCATCTTTTTGGTGCTACTGATTGCTGTGGACGCCACCTGTTGCTATACCAACCGCTGCGGCATGCTGATGTTTCTGGCTGTCAAGCTGTTTGGGCAGAAGGTCCCTGGGATTAAGACTGTGGAAGAGGGTGACAGCACCTGTAATGGGAAAACGTCCCCCATTGGAGATCCTGCCACAGAGGCCTGAGTTACTGAACAGGAAGTGACATCCTAGTATCTGAAGAATGGAACCTGTAAATGCCAAAGTAGACAGGAGGAAGTATTGTGAGTTGGGGGTCTTAGTTAAATGTTTTTGGAGAGTTCCCAGGACAGTCCAAGTTGAGAAAGGATAAGGATTCGGAAAGTTATCTGTGAATTTTAAAGTCTAACATCAACAGATGGTTGTAATTTCATCC
>XM_036943136.1
AAACacatgtttccaccactgttgtATTTCGCGCGCAATTGCATGCAGCAGGTGTCAAGGACTACATCGATCCATTCATTGAGGATAGTGACAACGTTGAGGTAGAAATGGCTGAATCGATGCTCATCTTGAGAATGTGTTCCATAATATCGGTCCTTGGTTTTTCAGAGGCCAAAATGGAAATCATCACCAGCAAAGCAGATGTGTTGCTAGGTGAGAATGCCATGCTCCACTGCAAAGctggtggggaaggagacatCACCTGGCAGAAAGATGGAGAGGATGCTGAAGATGACCAGGTTGAGAAAGTGGATGAAACATCGTCAAAACTGTTCATCAGGAATGCCAAGATAGAGGATGCAGGACGGTACACATGCCTCTGTGAATTTGACACAGGCCACAGAGATTATGTATCTTATGCCATCTTTGTCTATGAGCCGCCATCCTTTGGGCAAACACCGACCAACCATGAGTTCCTGGAGGGTCAAGATGTGGTCATCACCTGCGTGGTCACTGGCAAGCCGGCGGTGGAAGTCAACTGGGAGAGGGACCATCAGAAACTGCACTCTGACGGTCGGATCACAAGATTGAAAGACAACTCCCTACAGATCAACAACATCAGCAGGAAGGATCGCGGATCATATACCTGTGAGGCTAAAATCAAGGACCGGCCCATTTTCAAAAAGCTCAACATCTCCATCTCTGTCAACGTTCCTCCCACAGTGAAGATCCATGAGGAGGTGAAGAAAGTCATGGCCGGACCAGAGACCAATGTCTCCCTCAGCTGCCTGGTCGAGGGAGTCCCCCAACCGAACATCATCTGGAcaatCCCAGACTCTTCAGATGAGTCCCGCTACAAGTACAACTCAGACAAGAGCGAGCTGATTATCTCGTCCGTTGTCAGGAGCGACTACGGAGAGTACATCTGCACGGCCAAGAATAAGATCGCAGAGAGCAGTGCCATGATCATGCTGGATGTCTCAGAGCATCCTGTAGCAGTGCTGAGCCAGGAGAAGATGAAGGTGGAGCCAGGCCAGACTCTCTCAGTGTCCTGTAACGTCTCAGGACACCCTATTCCCGCGCTGCAGTGGGTCAGGAAGATCAACAATGACCACCTGCTAACAGTGGACACTGGTGGAGGTCGAGTGAGAATGGAGGATGGCTATGTCCTGGTCGTTGACAATGTGACGTCCTCAGATGGAGGGCTGTACAGCTGCATGGCTATCAGTCCTGCTGGCAACGCCTCCACAGACTTCAGCCTGCAGAcctggccAGGCAAAGCATCCCAGGTAAGTGGCACCCCAGGGCCTACATCGGTCCACTTCACCCTGGGGGCTTCCCTGGTGGACGGGGGCTCTCCCATCACCCACTTCACCCTCCAGTGGAAGACAGGACGTGAGAACAATTGGCAGGAGAGAGTCATCCAGTCCACAGACCCCCTGGTTATCACAGATCTGATTCCCTACACCTCCTACTCTGTCCGGTTTGCCCCTCGGAACCACCTGGGTCAGGGTGGCTTCTCAGACGAGCTCACAGTACGCACACAGGGCATACGAGGGGAACCAGACAGCCCGGTCCTGGTGGCCAGCGAGGGGAAGTTTGAGGGCAATATGTTCTCAATCCCTTTAACACAGTTGGACAGCGGAGGCTCCCCCATTATCCACTACATTGTCCGTTACAGAGTGAATAAGATGGACGAGGACTGGAGGGTGAAGGACCTGCCGTCCAACATGACAGTGATCAACCTCCATGACCTGCAGTGTAAATCAGACTACCACATGGAGGTGCTAGCCGTCAACTCCTACGGCTCCTCCAGCCCAGCCAAGCTGAACTTCAATGTCCCACAACCTGGAAAACGTCCCCCATTGGAGATCCTGCCACAGAGGCCTGAGTTACTGAACAGGAAGTGACATCCTAGTATCTGAAGAATGGAACCTGTAAATGCCAAAGTAGACAGGAGGAAGTATTGTGAGTTGGGGGTCTTAGTTAAATGTTTTTGGAGAGTTCCCAGGACAGTCCAAGTTGAGAAAGGATAAGGATTCGGAAAGTTATCTGTGAATTTTAAAGTCTAACATCAACAGATGGTTGTAATTTCATCC

Function

NR:

description
neural cell adhesion molecule 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625630.2 False 2305 mRNA 0.52 15 24106644 24124814
XM_036943136.1 True 2099 mRNA 0.51 14 24106645 24124814

Neighbor

gene id symbol gene type direction distance location
tmem147 LOC106605633 coding upstream 25629 24077675 ~ 24081015 (+)
LOC100135863 LOC106577739 coding upstream 30419 24069369 ~ 24076225 (+)
LOC100136301 LOC106605632 coding upstream 51980 24041681 ~ 24054664 (+)
LOC110538629 LOC106605631 coding upstream 90700 24001565 ~ 24015944 (+)
LOC110538573 fxyd9b coding upstream 109282 23984319 ~ 23997362 (+)
LOC110538727 LOC106605639 coding downstream 66076 24190890 ~ 24200234 (+)
LOC110538747 LOC106578439 coding downstream 76285 24201099 ~ 24238678 (+)
LOC110538776 LOC106605668 coding downstream 135574 24260388 ~ 24270406 (+)
LOC110538793 LOC106605640 coding downstream 171353 24296167 ~ 24320738 (+)
LOC110538837 fbrl coding downstream 213911 24338725 ~ 24342581 (+)
G124087 NA non-coding upstream 50524 24055823 ~ 24056120 (+)
G124080 NA non-coding upstream 78989 24027437 ~ 24027655 (+)
G124079 NA non-coding upstream 80555 24025804 ~ 24026089 (+)
G124069 NA non-coding upstream 115810 23988981 ~ 23990834 (+)
G124049 NA non-coding upstream 122584 23980826 ~ 23984060 (+)
G124119 NA non-coding downstream 4784 24129598 ~ 24129956 (+)
G124122 LOC106578386 non-coding downstream 21252 24146066 ~ 24146722 (+)
G124124 LOC106605585 non-coding downstream 24279 24149093 ~ 24154800 (+)
G124130 NA non-coding downstream 37751 24162565 ~ 24162813 (+)
G124132 NA non-coding downstream 38881 24163695 ~ 24163901 (+)
LOC110538497 LOC106605627 other upstream 225008 23861576 ~ 23881639 (+)
G123980 NA other upstream 281142 23824693 ~ 23825502 (+)
G122459 LOC106578191 other upstream 1295381 22810767 ~ 22811263 (+)
apoc4 NA other upstream 1756708 22348543 ~ 22349936 (+)
LOC110537939 apoc1 other upstream 1760029 22342491 ~ 22346615 (+)
G124121 LOC106605585 other downstream 22047 24146861 ~ 24148593 (+)
LOC110538915 LOC106605649 other downstream 416190 24540963 ~ 24544247 (+)
G124451 LOC106578403 other downstream 748237 24873051 ~ 24873834 (+)
LOC110534557 LOC106605501 other downstream 1252670 25377221 ~ 25396334 (+)
G125934 NA other downstream 1558066 25682880 ~ 25757853 (+)

Expression


Co-expression Network