LOC110538717 (LOC106578554)


Basic Information

Item Value
gene id LOC110538717
gene name LOC106578554
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24178523 ~ 24184172 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625679.2
ggtggcggtaatgcacatTTAAAGTTGGCCATCTACACCCTGTGCGGCACTTTCTTTGTTCCCTCTGCACATGGGgTTGTGTGTGGTCTCTGTGCTGTTTGTTATCATGATATCATCAGTGGTAACTACAACCAGTCTACAACCAAGAGAAGTGGCAGCTCCGGGCAGTGACATCACCCTTAGCTGCTCTTTGTCTAAAAACCTGAACCTCAACAACCTGGTCGTCAACTGGCAGCGTGGAGAGTCAGAGGTGGTCCACAGCTATTACCATGGGAGAGATCAGCTGGAAAGACAGAGTGTTGTTTACAAGGGACGAACTCATCTGTTTGAAGACCAGCTCACAGTGGGAAATGCCTCACTTAGACTGAGTGATGTGCAGCCgagtgaccagggcccatacacCTGTGATGTGACAGATGAACAGGGAAGCACCCAGGAAAAGCTACAACTTCTAGTGGCAGCCCCTTATGATGAGCCCAGGATATCCATCCAAGCCACTTGTGACGGCTTTGTTGTGACCTTCAGTGCCTCTCAGGGGTTTCCCCAGCCAGAGGTAGTGTGGAAAGGTGTGATGGGCAGTACCAACACCACTATGGAGTTAGACAGCAAGGGGCTCTATGAGCTGGAGAGTGAGGTGACCCTGAGGCTGAACAGCACTCTGACTGTTACAGCCGAGCTGAGACTGAGGGTGCTGGACCAGAGTTTCACCAAGTTTCTCACACTCCACCCACCACCAGTGTGCTATGTGATGCCAGCTGAGCAGAGGAGAAGATTGTTGATATATCCCCTGCTGCTAATGCTCCTGGGATTGGTGCTCCTGTTATCCTGGAAGAGGTCTGAGCAGGAGACCAAAAAGGATAAGAAAACAGAAGAATAGAATGGCCTTCGGTCCATGGTCACTCAACAGGCATCATGCCAGAGCAATTATCATTGCTTGTTTACAGAGAAAACATAAAGGGAGGACAGACTTTTATACTAATgtacattttaatagaaagtcATTTTGTAAAAGCGGAACTACAATACATTATACACAAAGTTCAACACAATACAATGGGAGTTGCACACCACAACACTAGATggtcatatgtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgacacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagactcaacaacaagtgggacacaatcatgaagtggaatgacatttattggatatttcaaacttttttaacaaataaaaaactgaaaaatt
>XM_036943182.1
ggtggcggtaatgcacatTTAAAGTTGGCCATCTACACCCTGTGCGGCACTTTCTTTGTTCCCTCTGCACATGGGgTTGTGTGTGGTCTCTGTGCTGTTTGTTATCATGATATCATCAGTGGTAACTACAACCAGTCTACAACCAAGAGAAGTGGCAGCTCCGGGCAGTGACATCACCCTTAGCTGCTCTTTGTCTAAAAACCTGAACCTCAACAACCTGGTCGTCAACTGGCAGCGTGGAGAGTCAGAGGTGGTCCACAGCTATTACCATGGGAGAGATCAGCTGGAAAGACAGAGTGTTGTTTACAAGGGACGAACTCATCTGTTTGAAGACCAGCTCACAGTGGGAAATGCCTCACTTAGACTGAGTGATGTGCAGCCgagtgaccagggcccatacacCTGTGATGTGACAGATGAACAGGGAAGCACCCAGGAAAAGCTACAACTTCTAGTGGCAGCCGAGCTGAGACTGAGGGTGCTGGACCAGAGTTTCACCAAGTTTCTCACACTCCACCCACCACCAGTGTGCTATGTGATGCCAGCTGAGCAGAGGAGAAGATTGTTGATATATCCCCTGCTGCTAATGCTCCTGGGATTGGTGCTCCTGTTATCCTGGAAGAGGTCTGAGCAGGAGACCAAAAAGGATAAGAAAACAGAAGAATAGAATGGCCTTCGGTCCATGGTCACTCAACAGGCATCATGCCAGAGCAATTATCATTGCTTGTTTACAGAGAAAACATAAAGGGAGGACAGACTTTTATACTAATgtacattttaatagaaagtcATTTTGTAAAAGCGGAACTACAATACATTATACACAAAGTTCAACACAATACAATGGGAGTTGCACACCACAACACTAGATggtcatatgtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgacacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagactcaacaacaagtgggacacaatcatgaagtggaatgacatttattggatatttcaaacttttttaacaaataaaaaactgaaaaatt

Function

NR:

description
CD276 antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625679.2 False 1281 mRNA 0.46 5 24178523 24184172
XM_036943182.1 True 1071 mRNA 0.44 5 24178523 24184172

Neighbor

gene id symbol gene type direction distance location
LOC110538705 LOC106577653 coding downstream 5687 24144519 ~ 24172836 (-)
LOC118938710 LOC106605635 coding downstream 38855 24138846 ~ 24139668 (-)
LOC110538681 LOC106605635 coding downstream 46920 24124948 ~ 24131603 (-)
LOC110533695 NA coding downstream 87059 24084443 ~ 24091464 (-)
LOC110538540 LOC106605662 coding downstream 280971 23888015 ~ 23897552 (-)
LOC110538767 LOC106605667 coding upstream 65690 24249862 ~ 24253101 (-)
LOC110538859 LOC106578507 coding upstream 296093 24480265 ~ 24492482 (-)
LOC100301652 LOC100301652 coding upstream 319634 24503806 ~ 24504593 (-)
LOC110538887 LOC106605647 coding upstream 347252 24531424 ~ 24540898 (-)
LOC110538978 LOC106605653 coding upstream 400221 24584393 ~ 24601385 (-)
G124944 NA non-coding downstream 1388 24176850 ~ 24177135 (-)
G124958 NA non-coding downstream 5084 24173226 ~ 24173439 (-)
G124947 NA non-coding downstream 48836 24129417 ~ 24129687 (-)
G124935 NA non-coding downstream 58455 24119691 ~ 24120068 (-)
G124943 NA non-coding upstream 53479 24237651 ~ 24238511 (-)
G124994 NA non-coding upstream 70484 24254656 ~ 24254894 (-)
G124995 NA non-coding upstream 71568 24255740 ~ 24256041 (-)
G125010 NA non-coding upstream 94087 24278259 ~ 24278499 (-)
G125032 NA non-coding upstream 124206 24308378 ~ 24308833 (-)
G124840 NA other downstream 273846 23903839 ~ 23904677 (-)
LOC110538355 LOC106577931 other downstream 896725 23279116 ~ 23281851 (-)
G123435 NA other downstream 979271 23185640 ~ 23199252 (-)
G123308 NA other downstream 1172711 23004986 ~ 23005812 (-)
G125003 NA other upstream 85054 24269226 ~ 24270136 (-)
G125043 NA other upstream 140408 24324580 ~ 24324836 (-)
G125305 NA other upstream 591048 24775220 ~ 24776627 (-)
G127083 NA other upstream 2377442 26561614 ~ 26562127 (-)

Expression


Co-expression Network