LOC110538727 (LOC106605639)


Basic Information

Item Value
gene id LOC110538727
gene name LOC106605639
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24190890 ~ 24200234 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625689.2
ACAGTCGTGATGGAACAAAACCACGACTCCTACGTCATAATAATGCGACTGGCCATTTTGGACAACGTTGGCCTCGGTTTGTAGTAAGTATGGCGATGAAATCAGGAGAGGAGCGGTTGAAGGAGATGGAGGCTGAAATGGCTCTGTTTGAGCAGGAGGTCCTGGGGGGTCAAGTGGCAATGACTGCAGGAGACCCTGTAGTGATGGAGTTGCTCCCAATGGGTGTTCCTATGACTGTTCCTATGATCCGACCCATCATCGGCACCAACACCTACCGACAGgtTCAGCAAACTTTGGATGCAAGGGCTGCCACTTTCGTGGGACCTCCACCCCCTGCATTTGTAGGCCCAGCTATAACCCCAGGTGTCAGACCACCGGCAATGATGAGACCAGCGTTTATGCCGCACATCCTGCAGAGACCAGGTCCGAGGATGCCTGTGATGAGTGGTCCCCCTCCACAGGGTATGATGGCTCCCCCACTGCCACGCCCCCCTCCTCCCCCGCCCATGATGATGGCACCCCCCATGCAAGGACCCCCTCAGCATCCTCAGCATCCCATGGACCCAATGGGGCATATGAGCTCAGTAGGACCTCCGGTGGGATCGACCCATGGTACACCCATGGGACACTCCATGGTGTCTGCACCCTCCAGGTCTGTGACCCAGGCCCCTCCCAAGCTCACCCCCTCGATCATCTCTGCAGCCCCCACTGTCTACACGGCTCCCTCCGGACCCAAGATACCAGACATCCATGCCCAGAGAAAGGCTCGCATGGAGGAGCTGGCAGCGTCTGTAGCAGAGCAGCAGGCAGCGGTGATGGCCGCCGGACTGCTGGAGGCTAAGAAGGAGGCCAGCCTAGCCGCCTCAGATGACAACGTTATCGGACCCAGCATGCCAGAGCCCGAGCCCATCCACACTGAGCCAGCGGATAGCACaacagaggagaagaagaagggtaAGCAAGAGAAGGCGAAGAAGTGTATCCGTACAGCCGCAGGCACCAGCTGGGAGGACCAGAGTCTACTGGAGTGGGACTCAGATGATTTCAGAATCTTCTGTGGAGACCTTGGCAATGAGGTGAACGACGACATCCTGGCAAGGGCATTCAGCCGCTACCCCTCCTACCTGAAAGCCAAGGTGGTGCGGGACAAACGCACAGGCAAGACCAAGGGCTACGGCTTTGTCAGCTTCAAGGACCCCAATGACTACGTCCGAGCCATGAGGGAGATGAACGGGAAGTATGTCGGCAGCAGACCCATCAAACTGAGAAAGAGCATGTGGAAGGACAGGAACATGGAAGTTGTACGcaagaaacagaaggagaaaaaGAAACTGGGACTGAGATAGATGGTATTTCccttgtgtatgtatgtgcgagTGTTGTTTTTTGACTGGGAGTGTGTGAGAATCACACTGATGGCAGAACACTGTTGCCATTGCCCAGTTGGAAGGCCACTCATCCAGCTATCTGACATGTTTTCCATTACCACAGAGTAGGGATGTCATTTTACTCATGGAACATGGTTAAACTAGGCTACAAAACACTGTACATGGTCCTGGTTGTAATGGTTAGACATGAACCATGCCCTTCTGAAGTGTAGAATGTACTGATCTCCtgtttctgttgttttttttttacattttagtttgTAAAAAAATTCAACATCACTCAGATTTTCTTAATTGGTATGGCTCCCATGCATCTCATGATTTTTGTCTGAAATGTGAGTTTGGTGATCTTGTTTATGTATATGCTATTGTGGAAACTACTTCCAATGGCAATTATGTATTTCCGGAGAGCCTCTGTTATTCACacagggatttaaaaaaaaaaaaaaaaaaaaaaaaactaaatatttGTACATTAAAGTGGATTATTTTAAAGCAGCGATTTGAAAATAAtgcaaagttttttttaaataaaaccaAATGTCTTAACCGGCTTGACATA
>XM_021625704.2
ACGTCATAATAATGCGACTGGCCATTTTGGACAACGTTGGCCTCGGTTTGTAGGGACGGATAAATACAAAAATTCATGCTTTATTTAAATAGCTAGTTAAGATTAAAGAGTTTTGGAACGTCACGATTTAGGTAAGTATGGCGATGAAATCAGGAGAGGAGCGGTTGAAGGAGATGGAGGCTGAAATGGCTCTGTTTGAGCAGGAGGTCCTGGGGGGTCAAGTGGCAATGACTGCAGGAGACCCTGTAGTGATGGAGTTGCTCCCAATGGGTGTTCCTATGACTGTTCCTATGATCCGACCCATCATCGGCACCAACACCTACCGACAGgtTCAGCAAACTTTGGATGCAAGGGCTGCCACTTTCGTGGGACCTCCACCCCCTGCATTTGTAGGCCCAGCTATAACCCCAGGTGTCAGACCACCGGCAATGATGAGACCAGCGTTTATGCCGCACATCCTGCAGAGACCAGGTCCGAGGATGCCTGTGATGAGTGGTCCCCCTCCACAGGGTATGATGGCTCCCCCACTGCCACGCCCCCCTCCTCCCCCGCCCATGATGATGGCACCCCCCATGCAAGGACCCCCTCAGCATCCTCAGCATCCCATGGACCCAATGGGGCATATGAGCTCAGTAGGACCTCCGGTGGGATCGACCCATGGTACACCCATGGGACACTCCATGGTGTCTGCACCCTCCAGGTCTGTGACCCAGGCCCCTCCCAAGCTCACCCCCTCGATCATCTCTGCAGCCCCCACTGTCTACACGGCTCCCTCCGGACCCAAGATACCAGACATCCATGCCCAGAGAAAGGCTCGCATGGAGGAGCTGGCAGCGTCTGTAGCAGAGCAGCAGGCAGCGGTGATGGCCGCCGGACTGCTGGAGGCTAAGAAGGAGGCCAGCCTAGCCGCCTCAGATGACAACGTTATCGGACCCAGCATGCCAGAGCCCGAGCCCATCCACACTGAGCCAGCGGATAGCACaacagaggagaagaagaagggtaAGCAAGAGAAGGCGAAGAAGTGTATCCGTACAGCCGCAGGCACCAGCTGGGAGGACCAGAGTCTACTGGAGTGGGACTCAGATGATTTCAGAATCTTCTGTGGAGACCTTGGCAATGAGGTGAACGACGACATCCTGGCAAGGGCATTCAGCCGCTACCCCTCCTACCTGAAAGCCAAGGTGGTGCGGGACAAACGCACAGGCAAGACCAAGGGCTACGGCTTTGTCAGCTTCAAGGACCCCAATGACTACGTCCGAGCCATGAGGGAGATGAACGGGAAGTATGTCGGCAGCAGACCCATCAAACTGAGAAAGAGCATGTGGAAGGACAGGAACATGGAAGTTGTACGcaagaaacagaaggagaaaaaGAAACTGGGACTGAGATAGATGGTATTTCccttgtgtatgtatgtgcgagTGTTGTTTTTTGACTGGGAGTGTGTGAGAATCACACTGATGGCAGAACACTGTTGCCATTGCCCAGTTGGAAGGCCACTCATCCAGCTATCTGACATGTTTTCCATTACCACAGAGTAGGGATGTCATTTTACTCATGGAACATGGTTAAACTAGGCTACAAAACACTGTACATGGTCCTGGTTGTAATGGTTAGACATGAACCATGCCCTTCTGAAGTGTAGAATGTACTGATCTCCtgtttctgttgttttttttttacattttagtttgTAAAAAAATTCAACATCACTCAGATTTTCTTAATTGGTATGGCTCCCATGCATCTCATGATTTTTGTCTGAAATGTGAGTTTGGTGATCTTGTTTATGTATATGCTATTGTGGAAACTACTTCCAATGGCAATTATGTATTTCCGGAGAGCCTCTGTTATTCACacagggatttaaaaaaaaaaaaaaaaaaaaaaaaactaaatatttGTACATTAAAGTGGATTATTTTAAAGCAGCGATTTGAAAATAAtgcaaagttttttttaaataaaaccaAATGTCTTAACCGGCTTGACATA
>XM_036943161.1
GCCATTTTGGACAACGTTGGCCTCGGTTTGTAGGGACGGATAAATACAAAAATTCATGCTTTATTTAAATAGCTAGTTAAGATTAAAGAGTTTTGGAACGTCACGATTTAGGGTAATAACGTTTTTAAGTATGGCGATGAAATCAGGAGAGGAGCGGTTGAAGGAGATGGAGGCTGAAATGGCTCTGTTTGAGCAGGAGGTCCTGGGGGGTCAAGTGGCAATGACTGCAGGAGACCCTGTAGTGATGGAGTTGCTCCCAATGGGTGTTCCTATGACTGTTCCTATGATCCGACCCATCATCGGCACCAACACCTACCGACAGgtTCAGCAAACTTTGGATGCAAGGGCTGCCACTTTCGTGGGACCTCCACCCCCTGCATTTGTAGGCCCAGCTATAACCCCAGGTGTCAGACCACCGGCAATGATGAGACCAGCGTTTATGCCGCACATCCTGCAGAGACCAGGTCCGAGGATGCCTGTGATGAGTGGTCCCCCTCCACAGGGTATGATGGCTCCCCCACTGCCACGCCCCCCTCCTCCCCCGCCCATGATGATGGCACCCCCCATGCAAGGACCCCCTCAGCATCCTCAGCATCCCATGGACCCAATGGGGCATATGAGCTCAGTAGGACCTCCGGTGGGATCGACCCATGGTACACCCATGGGACACTCCATGGTGTCTGCACCCTCCAGGTCTGTGACCCAGGCCCCTCCCAAGCTCACCCCCTCGATCATCTCTGCAGCCCCCACTGTCTACACGGCTCCCTCCGGACCCAAGATACCAGACATCCATGCCCAGAGAAAGGCTCGCATGGAGGAGCTGGCAGCGTCTGTAGCAGAGCAGCAGGCAGCGGTGATGGCCGCCGGACTGCTGGAGGCTAAGAAGGAGGCCAGCCTAGCCGCCTCAGATGACAACGTTATCGGACCCAGCATGCCAGAGCCCGAGCCCATCCACACTGAGCCAGCGGATAGCACaacagaggagaagaagaagggtaAGCAAGAGAAGGCGAAGAAGTGTATCCGTACAGCCGCAGGCACCAGCTGGGAGGACCAGAGTCTACTGGAGTGGGACTCAGATGATTTCAGAATCTTCTGTGGAGACCTTGGCAATGAGGTGAACGACGACATCCTGGCAAGGGCATTCAGCCGCTACCCCTCCTACCTGAAAGCCAAGGTGGTGCGGGACAAACGCACAGGCAAGACCAAGGGCTACGGCTTTGTCAGCTTCAAGGACCCCAATGACTACGTCCGAGCCATGAGGGAGATGAACGGGAAGTATGTCGGCAGCAGACCCATCAAACTGAGAAAGAGCATGTGGAAGGACAGGAACATGGAAGTTGTACGcaagaaacagaaggagaaaaaGAAACTGGGACTGAGATAGATGGTATTTCccttgtgtatgtatgtgcgagTGTTGTTTTTTGACTGGGAGTGTGTGAGAATCACACTGATGGCAGAACACTGTTGCCATTGCCCAGTTGGAAGGCCACTCATCCAGCTATCTGACATGTTTTCCATTACCACAGAGTAGGGATGTCATTTTACTCATGGAACATGGTTAAACTAGGCTACAAAACACTGTACATGGTCCTGGTTGTAATGGTTAGACATGAACCATGCCCTTCTGAAGTGTAGAATGTACTGATCTCCtgtttctgttgttttttttttacattttagtttgTAAAAAAATTCAACATCACTCAGATTTTCTTAATTGGTATGGCTCCCATGCATCTCATGATTTTTGTCTGAAATGTGAGTTTGGTGATCTTGTTTATGTATATGCTATTGTGGAAACTACTTCCAATGGCAATTATGTATTTCCGGAGAGCCTCTGTTATTCACacagggatttaaaaaaaaaaaaaaaaaaaaaaaaactaaatatttGTACATTAAAGTGGATTATTTTAAAGCAGCGATTTGAAAATAAtgcaaagttttttttaaataaaaccaAATGTCTTAACCGGCTTGACATA
>XM_021625697.2
GTACTAACttgctgttttttttaaaatGATGGCATCCTGGTTAACGTTAGCCAGACAACTAGCGATAACTGTTAGCAAACAGTTAAAGTTACTAGCCAATACAGTAGCTATAACGTAAACAAGCTAACTATCAATGCCTTTGGTGTTAGCCAAACGTTAACTGTACACATTTTCAGTAGCTACCTAGATGTGTTTACCACCAAAGAATGGACTACCAACAAAACGTTTGTCTTTGCAGTAAGTATGGCGATGAAATCAGGAGAGGAGCGGTTGAAGGAGATGGAGGCTGAAATGGCTCTGTTTGAGCAGGAGGTCCTGGGGGGTCAAGTGGCAATGACTGCAGGAGACCCTGTAGTGATGGAGTTGCTCCCAATGGGTGTTCCTATGACTGTTCCTATGATCCGACCCATCATCGGCACCAACACCTACCGACAGgtTCAGCAAACTTTGGATGCAAGGGCTGCCACTTTCGTGGGACCTCCACCCCCTGCATTTGTAGGCCCAGCTATAACCCCAGGTGTCAGACCACCGGCAATGATGAGACCAGCGTTTATGCCGCACATCCTGCAGAGACCAGGTCCGAGGATGCCTGTGATGAGTGGTCCCCCTCCACAGGGTATGATGGCTCCCCCACTGCCACGCCCCCCTCCTCCCCCGCCCATGATGATGGCACCCCCCATGCAAGGACCCCCTCAGCATCCTCAGCATCCCATGGACCCAATGGGGCATATGAGCTCAGTAGGACCTCCGGTGGGATCGACCCATGGTACACCCATGGGACACTCCATGGTGTCTGCACCCTCCAGGTCTGTGACCCAGGCCCCTCCCAAGCTCACCCCCTCGATCATCTCTGCAGCCCCCACTGTCTACACGGCTCCCTCCGGACCCAAGATACCAGACATCCATGCCCAGAGAAAGGCTCGCATGGAGGAGCTGGCAGCGTCTGTAGCAGAGCAGCAGGCAGCGGTGATGGCCGCCGGACTGCTGGAGGCTAAGAAGGAGGCCAGCCTAGCCGCCTCAGATGACAACGTTATCGGACCCAGCATGCCAGAGCCCGAGCCCATCCACACTGAGCCAGCGGATAGCACaacagaggagaagaagaagggtaAGCAAGAGAAGGCGAAGAAGTGTATCCGTACAGCCGCAGGCACCAGCTGGGAGGACCAGAGTCTACTGGAGTGGGACTCAGATGATTTCAGAATCTTCTGTGGAGACCTTGGCAATGAGGTGAACGACGACATCCTGGCAAGGGCATTCAGCCGCTACCCCTCCTACCTGAAAGCCAAGGTGGTGCGGGACAAACGCACAGGCAAGACCAAGGGCTACGGCTTTGTCAGCTTCAAGGACCCCAATGACTACGTCCGAGCCATGAGGGAGATGAACGGGAAGTATGTCGGCAGCAGACCCATCAAACTGAGAAAGAGCATGTGGAAGGACAGGAACATGGAAGTTGTACGcaagaaacagaaggagaaaaaGAAACTGGGACTGAGATAGATGGTATTTCccttgtgtatgtatgtgcgagTGTTGTTTTTTGACTGGGAGTGTGTGAGAATCACACTGATGGCAGAACACTGTTGCCATTGCCCAGTTGGAAGGCCACTCATCCAGCTATCTGACATGTTTTCCATTACCACAGAGTAGGGATGTCATTTTACTCATGGAACATGGTTAAACTAGGCTACAAAACACTGTACATGGTCCTGGTTGTAATGGTTAGACATGAACCATGCCCTTCTGAAGTGTAGAATGTACTGATCTCCtgtttctgttgttttttttttacattttagtttgTAAAAAAATTCAACATCACTCAGATTTTCTTAATTGGTATGGCTCCCATGCATCTCATGATTTTTGTCTGAAATGTGAGTTTGGTGATCTTGTTTATGTATATGCTATTGTGGAAACTACTTCCAATGGCAATTATGTATTTCCGGAGAGCCTCTGTTATTCACacagggatttaaaaaaaaaaaaaaaaaaaaaaaaactaaatatttGTACATTAAAGTGGATTATTTTAAAGCAGCGATTTGAAAATAAtgcaaagttttttttaaataaaaccaAATGTCTTAACCGGCTTGACATA

Function

NR:

description
RNA-binding protein 42-like

GO: NA

KEGG:

id description
K25079 RBM42; RNA-binding protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625689.2 False 1950 mRNA 0.50 11 24190890 24200234
XM_021625704.2 False 1998 mRNA 0.49 11 24190921 24200234
XM_036943161.1 False 1991 mRNA 0.49 11 24190941 24200234
XM_021625697.2 True 2104 mRNA 0.49 10 24191081 24200234

Neighbor

gene id symbol gene type direction distance location
LOC110538661 LOC106605634 coding upstream 66076 24106644 ~ 24124814 (+)
tmem147 LOC106605633 coding upstream 109875 24077675 ~ 24081015 (+)
LOC100135863 LOC106577739 coding upstream 114665 24069369 ~ 24076225 (+)
LOC100136301 LOC106605632 coding upstream 136226 24041681 ~ 24054664 (+)
LOC110538629 LOC106605631 coding upstream 174946 24001565 ~ 24015944 (+)
LOC110538747 LOC106578439 coding downstream 865 24201099 ~ 24238678 (+)
LOC110538776 LOC106605668 coding downstream 60154 24260388 ~ 24270406 (+)
LOC110538793 LOC106605640 coding downstream 95933 24296167 ~ 24320738 (+)
LOC110538837 fbrl coding downstream 138491 24338725 ~ 24342581 (+)
LOC110538803 LOC106605641 coding downstream 143647 24343881 ~ 24467486 (+)
G124118 NA non-coding upstream 13196 24177290 ~ 24177694 (+)
G124117 NA non-coding upstream 13739 24176846 ~ 24177151 (+)
G124139 NA non-coding upstream 18416 24172170 ~ 24172474 (+)
G124132 NA non-coding upstream 26989 24163695 ~ 24163901 (+)
G124130 NA non-coding upstream 28077 24162565 ~ 24162813 (+)
G124146 NA non-coding downstream 45329 24245563 ~ 24250400 (+)
G124170 NA non-coding downstream 50705 24250939 ~ 24253089 (+)
G124175 NA non-coding downstream 55511 24255745 ~ 24256051 (+)
G124176 NA non-coding downstream 55962 24256196 ~ 24256496 (+)
G124225 NA non-coding downstream 124064 24324298 ~ 24324536 (+)
G124121 LOC106605585 other upstream 42297 24146861 ~ 24148593 (+)
LOC110538497 LOC106605627 other upstream 309254 23861576 ~ 23881639 (+)
G123980 NA other upstream 365388 23824693 ~ 23825502 (+)
G122459 LOC106578191 other upstream 1379627 22810767 ~ 22811263 (+)
apoc4 NA other upstream 1840954 22348543 ~ 22349936 (+)
LOC110538915 LOC106605649 other downstream 340770 24540963 ~ 24544247 (+)
G124451 LOC106578403 other downstream 672817 24873051 ~ 24873834 (+)
LOC110534557 LOC106605501 other downstream 1177250 25377221 ~ 25396334 (+)
G125934 NA other downstream 1482646 25682880 ~ 25757853 (+)
G126387 LOC105417071 other downstream 1849616 26049850 ~ 26050104 (+)

Expression


Co-expression Network