LOC110538776 (LOC106605668)


Basic Information

Item Value
gene id LOC110538776
gene name LOC106605668
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24260388 ~ 24270406 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035955.1
CATACAGAAAGAACAAGCAAAGGATTTCCAGCAAAGAAGACGAAATTGGTGATTGTAATTGGTTGTTCAAAGCAGCAACGCCGAAGTCCGCTGTCATCAATGGTATGTCACGGAAGTTCATATGAGTCGTGACTCCAGCTTTAGACCGCAAAAGAGCTGGGCATCCTAGGGCTGAATGCAGAAGACGGTGGCTGTCCTGGGAGGGGGGATCGGGGGCCTGTCAGCCTGCTTCCACCTCAGCAAGAGCCACCAGGTCTCCAAGATAGTGCTGTTGGAGGGGGATGGACGGTTCGGAGGCTGGCTAAGTTCAACTCGTAGGGAGGATGGAGCTGTGTTTGAACATGGACCCAGAGGGATACGACCTGCAGGAGCCGTGGGACGAAACACACTCAACATGGTGGAAGAGTTGGGGCTGGAGAGCGAGGTCCTCCCAGTCACCTATGATCACGTGGCCTCTAAGAACCGTTACCTCTATGTGGGAGGCCAGCTACACAAGATGCCTTCTGGCTTAGGtGGAGTAGTGCGTACAGTCCCTCCGTTCTCTCGTCCTCTGGTCCAGAGCGTACTGAAGGAGATACTGATcagcagaggaaaggaggaggatgaGTCTGTTCATTCCTTCGTGTCGAGAAGGCTGGGCACTGAGcttGCAGACATTGCCATCGACAGCCTGTGCAGGGGAGTATTTGCAGGGGACTGCAGGAAGCTGAGTGTGCGCTCTTGTCTCCCGCCACTCTACAACGCAGAGAAGGCCAGAGGTTCCATCATCTTGGGAATGTTGCTGGGCCCAGGCCCTGGACCAGACGTACCCCCCTCTACCCTGACCAAGAGGGCTGCTCAGGAGAACTGGGCCCAGTGGTCACTGAAGAGGGGCTTACAGAACCTTCCGGAAGccctggaggagaggatgaggaatgGGGGACGTGTAGAGGTGCACAAAGACACCCCTGTGATGGGGCTAAGTACTAATGGCACCGGCTGGGAGaTTCAACTGGAGGACGGCACCATCAAAGCTGATCATATCATTGCTGCTCTACCAGCAAAAGcTCTGGCCTCAGCACTTCTCACTGCTGCACAGCCCCTGTCACAGCAGCTACGTGAGATCGCCACAGTAACCGTTGCCGTGGTAAACCTGGAGTACGAGGGTTCCGTCCTGCCTGTCACGGGCTTTGGCCACCTGGTGCCATCCTCAGAAGACAGAGGTCTCCTAGGGGTGGTCTATGACTCTGTTCCCTTCCCCCAGCATAACCGCACTGGAGAACCCACCACCAGACTAACAGTGATGTTGGGCGGGGCCTGGTTCCAGGAAGTGTTTGGGAATCCAGAGGAAGTGACCGAGCAGCTCCTCCTGGACAGGGCCACCCAGGCGGTGACATCACACCTGGGCGTTACTACACCACCTATCTGGAGCATCGTTGCACTGCTCAAGGATGGATTCATCATTCAGTGCTATCTTCCATAAATGTGATCTGAGTGCCTGCTTTCCTGTCCAGTCACTCTTAGTTTTAACATCCTCCACCATTTGTAGGCTGGTTCCAGGACTGCATTCCTCAATATTACCTTGGACACTGGAAACGACTTGAAAATATGAGACAAT
>XM_021625747.2
CATACAGAAAGAACAAGCAAAGGATTTCCAGCAAAGAAGACGAAATTGGTGATTGTAATTGGTTGTTCAAAGCAGCAACGCCGAAGTCCGCTGTCATCAATGGTATGTCACGGAAGTTCATATGAGTCGTGACTCCAGCTTTAGACCGCAAAAGAGCTGGGCATCCTAGGGCTGAATGCAGAAGACGGTGGCTGTCCTGGGAGGGGGGATCGGGGGCCTGTCAGCCTGCTTCCACCTCAGCAAGAGCCACCAGGTCTCCAAGATAGTGCTGTTGGAGGGGGATGGACGGTTCGGAGGCTGGCTAAGTTCAACTCGTAGGGAGGATGGAGCTGTGTTTGAACATGGACCCAGAGGGATACGACCTGCAGGAGCCGTGGGACGAAACACACTCAACATGGTGGAAGAGTTGGGGCTGGAGAGCGAGGTCCTCCCAGTCACCTATGATCACGTGGCCTCTAAGAACCGTTACCTCTATGTGGGAGGCCAGCTACACAAGATGCCTTCTGGCTTAGGtGGAGTAGTGCGTACAGTCCCTCCGTTCTCTCGTCCTCTGGTCCAGAGCGTACTGAAGGAGATACTGATcagcagaggaaaggaggaggatgaGTCTGTTCATTCCTTCGTGTCGAGAAGGCTGGGCACTGAGcttGCAGACATTGCCATCGACAGCCTGTGCAGGGGAGTATTTGCAGGGGACTGCAGGAAGCTGAGTGTGCGCTCTTGTCTCCCGCCACTCTACAACGCAGAGAAGGCCAGAGGTTCCATCATCTTGGGAATGTTGCTGGGCCCAGGCCCTGGACCAGACGTACCCCCCTCTACCCTGACCAAGAGGGCTGCTCAGGAGAACTGGGCCCAGTGGTCACTGAAGAGGGGCTTACAGAACCTTCCGGAAGccctggaggagaggatgaggaatgGGGGACGTGTAGAGGTGCACAAAGACACCCCTGTGATGGGGCTAAGTACTAATGGCACCGGCTGGGAGaTTCAACTGGAGGACGGCACCATCAAAGCTGATCATATCATTGCTGCTCTACCAGCAAAAGcTCTGGCCTCAGCACTTCTCACTGCTGCACAGCCCCTGTCACAGCAGCTACGTGAGATCGCCACAGTAACCGTTGCCGTGGTAAACCTGGAGTACGAGGGTTCCGTCCTGCCTGTCACGGGCTTTGGCCACCTGGTGCCATCCTCAGAAGACAGAGGTCTCCTAGGGGTGGTCTATGACTCTGTTCCCTTCCCCCAGCATAACCGCACTGGAGAACCCACCACCAGACTAACAGTGATGTTGGGCGGGGCCTGGTTCCAGGAAGTGTTTGGGAATCCAGAGGAAGTGACCGAGCAGCTCCTCCTGGACAGGGCCACCCAGGCGGTGACATCACACCTGGGCGTTACTACACCACCTATCTGGAGCATCGTTGCACTGCTCAAGGACTGCATTCCTCAATATTACCTTGGACACTGGAAACGACTTGAAAATATGAGACAATACATCAGAGACCACAATCTACCACTTAGTCTGGCTGGGTCCTCTTATGATGGCGTCTCGGTCAATGATGTCATCTTCAGTGGACGGACGGCAGCAGAGGGCCTTGTGGGAAAAGTCTAACCAGACGTTCAGGTTCCCAACCATGGATATGAGCTTATATTGTGAAAGAGATCTTGTTTTTTTTGCCTCATCGCATCGCGTTCTACAGTTAGTTTTGCTTTTACAcaactgtatcacaaccggccatgattgggagtcccatagggcggtgcccaattggcccagcgtcgtccgggtttggccggtgtaggccgtcattgtaaataagaatttgtacttaactgacttgccaagttaaatacaaATACTAATAAACATGTACATACAATTTACTAGTCACCCTCTGCATTTAAGCCCTCTGCAAAGGGAGGTCATTTTTTTGCGCAATATTCATGATTTATAAGCAGCATATTTATGAAGTTTTCCATTTCTATCTCATTGATCCTCTAGAGATGATTCTATGTCTGAGACATCACCACTAGCCTGGAAACCACGGGTAACCCACAGAACAGTTCTCATTCTaataaaatattgtttttgaAATCAAGGGCCGGATGAAAGTCATATGTCGTCACTACGTAAAATGGAACCACAATCTGAACTGTTTTAGGATGATTTGTCCCCGTAACTTTACTTCAAGGATTTAATTTTCTATGCAGTAGTTCAAAATGTAGAGTAACATTTTAAATTCAAGATGAGATTTCATATTTTAGTTATGGTGCCTTTTTGCTAACAGAAATCACCACCCCTTCATGAATGTACAGGCATATTTCATGTGGGAGACATGTTAAAGATGTGATAATCAGTGGTGTGTATATCCCTACTCCAACTGTCCTTTCCAGCCATCCATTTTTTACCCTATCCTCTCTGAATATAGCAGACAAAAATCTATTATTATTATGGTAAAGTATGTGCACTGATGTTTCATCACCGTGGTAACAGAACCACACAGACTGATGTGATGATCTCGATATGGTGATCTATCATGTATTTGGAATCTAATTACGATATTGGAAACTTTAATTTATAGAGTGGCAAGGGGATGGCTTGATAATGTATTTTTATACACAACTTTATTATCTGGAGAATGTTGCAGAGCAATAAATATGATGCTTTATCTTGTC
>XM_021625762.2
CATACAGAAAGAACAAGCAAAGGATTTCCAGCAAAGAAGACGAAATTGGTGATTGTAATTGGTTGTTCAAAGCAGCAACGCCGAAGTCCGCTGTCATCAATGGTATGTCACGGAAGTTCATATGAGTCGTGACTCCAGCTTTAGACCGCAAAAGAGCTGGGCATCCTAGGGCTGAATGCAGAAGACGGTGGCTGTCCTGGGAGGGGGGATCGGGGGCCTGTCAGCCTGCTTCCACCTCAGCAAGAGCCACCAGGTCTCCAAGATAGTGCTGTTGGAGGGGGATGGACGGTTCGGAGGCTGGCTAAGTTCAACTCGTAGGGAGGATGGAGCTGTGTTTGAACATGGACCCAGAGGGATACGACCTGCAGGAGCCGTGGGACGAAACACACTCAACATGAGCGTACTGAAGGAGATACTGATcagcagaggaaaggaggaggatgaGTCTGTTCATTCCTTCGTGTCGAGAAGGCTGGGCACTGAGcttGCAGACATTGCCATCGACAGCCTGTGCAGGGGAGTATTTGCAGGGGACTGCAGGAAGCTGAGTGTGCGCTCTTGTCTCCCGCCACTCTACAACGCAGAGAAGGCCAGAGGTTCCATCATCTTGGGAATGTTGCTGGGCCCAGGCCCTGGACCAGACGTACCCCCCTCTACCCTGACCAAGAGGGCTGCTCAGGAGAACTGGGCCCAGTGGTCACTGAAGAGGGGCTTACAGAACCTTCCGGAAGccctggaggagaggatgaggaatgGGGGACGTGTAGAGGTGCACAAAGACACCCCTGTGATGGGGCTAAGTACTAATGGCACCGGCTGGGAGaTTCAACTGGAGGACGGCACCATCAAAGCTGATCATATCATTGCTGCTCTACCAGCAAAAGcTCTGGCCTCAGCACTTCTCACTGCTGCACAGCCCCTGTCACAGCAGCTACGTGAGATCGCCACAGTAACCGTTGCCGTGGTAAACCTGGAGTACGAGGGTTCCGTCCTGCCTGTCACGGGCTTTGGCCACCTGGTGCCATCCTCAGAAGACAGAGGTCTCCTAGGGGTGGTCTATGACTCTGTTCCCTTCCCCCAGCATAACCGCACTGGAGAACCCACCACCAGACTAACAGTGATGTTGGGCGGGGCCTGGTTCCAGGAAGTGTTTGGGAATCCAGAGGAAGTGACCGAGCAGCTCCTCCTGGACAGGGCCACCCAGGCGGTGACATCACACCTGGGCGTTACTACACCACCTATCTGGAGCATCGTTGCACTGCTCAAGGACTGCATTCCTCAATATTACCTTGGACACTGGAAACGACTTGAAAATATGAGACAATACATCAGAGACCACAATCTACCACTTAGTCTGGCTGGGTCCTCTTATGATGGCGTCTCGGTCAATGATGTCATCTTCAGTGGACGGACGGCAGCAGAGGGCCTTGTGGGAAAAGTCTAACCAGACGTTCAGGTTCCCAACCATGGATATGAGCTTATATTGTGAAAGAGATCTTGTTTTTTTTGCCTCATCGCATCGCGTTCTACAGTTAGTTTTGCTTTTACAcaactgtatcacaaccggccatgattgggagtcccatagggcggtgcccaattggcccagcgtcgtccgggtttggccggtgtaggccgtcattgtaaataagaatttgtacttaactgacttgccaagttaaatacaaATACTAATAAACATGTACATACAATTTACTAGTCACCCTCTGCATTTAAGCCCTCTGCAAAGGGAGGTCATTTTTTTGCGCAATATTCATGATTTATAAGCAGCATATTTATGAAGTTTTCCATTTCTATCTCATTGATCCTCTAGAGATGATTCTATGTCTGAGACATCACCACTAGCCTGGAAACCACGGGTAACCCACAGAACAGTTCTCATTCTaataaaatattgtttttgaAATCAAGGGCCGGATGAAAGTCATATGTCGTCACTACGTAAAATGGAACCACAATCTGAACTGTTTTAGGATGATTTGTCCCCGTAACTTTACTTCAAGGATTTAATTTTCTATGCAGTAGTTCAAAATGTAGAGTAACATTTTAAATTCAAGATGAGATTTCATATTTTAGTTATGGTGCCTTTTTGCTAACAGAAATCACCACCCCTTCATGAATGTACAGGCATATTTCATGTGGGAGACATGTTAAAGATGTGATAATCAGTGGTGTGTATATCCCTACTCCAACTGTCCTTTCCAGCCATCCATTTTTTACCCTATCCTCTCTGAATATAGCAGACAAAAATCTATTATTATTATGGTAAAGTATGTGCACTGATGTTTCATCACCGTGGTAACAGAACCACACAGACTGATGTGATGATCTCGATATGGTGATCTATCATGTATTTGGAATCTAATTACGATATTGGAAACTTTAATTTATAGAGTGGCAAGGGGATGGCTTGATAATGTATTTTTATACACAACTTTATTATCTGGAGAATGTTGCAGAGCAATAAATATGATGCTTTATCTTGTC

Function

NR:

description
protoporphyrinogen oxidase-like isoform X3

GO:

id name namespace
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004729 oxygen-dependent protoporphyrinogen oxidase activity molecular_function

KEGG:

id description
K00231 PPOX, hemY; protoporphyrinogen/coproporphyrinogen III oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035955.1 False 1597 mRNA 0.55 14 24260388 24269223
XM_021625747.2 False 2670 mRNA 0.48 13 24260388 24270406
XM_021625762.2 True 2508 mRNA 0.48 12 24260388 24270406

Neighbor

gene id symbol gene type direction distance location
LOC110538747 LOC106578439 coding upstream 21710 24201099 ~ 24238678 (+)
LOC110538727 LOC106605639 coding upstream 60154 24190890 ~ 24200234 (+)
LOC110538661 LOC106605634 coding upstream 135574 24106644 ~ 24124814 (+)
tmem147 LOC106605633 coding upstream 179373 24077675 ~ 24081015 (+)
LOC100135863 LOC106577739 coding upstream 184163 24069369 ~ 24076225 (+)
LOC110538793 LOC106605640 coding downstream 25761 24296167 ~ 24320738 (+)
LOC110538837 fbrl coding downstream 68319 24338725 ~ 24342581 (+)
LOC110538803 LOC106605641 coding downstream 73475 24343881 ~ 24467486 (+)
LOC118938711 NA coding downstream 199054 24469460 ~ 24472368 (+)
LOC110538847 LOC106578478 coding downstream 205884 24476290 ~ 24480163 (+)
G124176 NA non-coding upstream 3892 24256196 ~ 24256496 (+)
G124175 NA non-coding upstream 4337 24255745 ~ 24256051 (+)
G124170 NA non-coding upstream 7299 24250939 ~ 24253089 (+)
G124146 NA non-coding upstream 9988 24245563 ~ 24250400 (+)
G124118 NA non-coding upstream 82694 24177290 ~ 24177694 (+)
G124225 NA non-coding downstream 53892 24324298 ~ 24324536 (+)
G124228 NA non-coding downstream 57533 24327939 ~ 24328279 (+)
G124229 NA non-coding downstream 58391 24328797 ~ 24329007 (+)
G124249 NA non-coding downstream 103779 24374185 ~ 24374593 (+)
G124121 LOC106605585 other upstream 111795 24146861 ~ 24148593 (+)
LOC110538497 LOC106605627 other upstream 378752 23861576 ~ 23881639 (+)
G123980 NA other upstream 434886 23824693 ~ 23825502 (+)
G122459 LOC106578191 other upstream 1449125 22810767 ~ 22811263 (+)
apoc4 NA other upstream 1910452 22348543 ~ 22349936 (+)
LOC110538915 LOC106605649 other downstream 270598 24540963 ~ 24544247 (+)
G124451 LOC106578403 other downstream 602645 24873051 ~ 24873834 (+)
LOC110534557 LOC106605501 other downstream 1107078 25377221 ~ 25396334 (+)
G125934 NA other downstream 1412474 25682880 ~ 25757853 (+)
G126387 LOC105417071 other downstream 1779444 26049850 ~ 26050104 (+)

Expression


Co-expression Network