LOC110538793 (LOC106605640)


Basic Information

Item Value
gene id LOC110538793
gene name LOC106605640
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24296167 ~ 24320738 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943200.1
TGGCAAGCCTAGTCAGTTCCTTCGCGCACAATGAACTGTAGACTACAGCTGGCTGTTACGTCCAGTCTGTGAGACCGGGGTGGGCTACAAGAGGAACAAAAAAGTGACAGTTTACTGTGGTGGTCTTACTTACAGCTTTAAATCCGCCACCTGATCTGCTATGGCAGCGATCATGGGACTCTCAAATCCAGTTCGGAAAGAAGGAATAAGATGCGTTGATATGTGGACACGCACTGGCGGCGCGCTCTGTGATCGTGTTTGATGTAACCTACCTTTAACAGGTACTGGTCAGAGCTCGTGCAGACGTGTCGAACCAAGCACTGTTGTAGAACCGAGCTAGAAAGCGTACTGTTTGGGGCCAGAAACAGCGACTGTGGCCCAACGCTTTGAGGCCATGAATTGCTTCAAAAGGCGTTTTGGACAGGATGTGGAGAAACAGGACCAAAAGCTGTCAAAACCAAGATGGGATACACCCAAAAACAAGGTGCCCACAGACCGGACCATGGTGGTGGGTGGCAGGCAAGGTGGGGCCTGTAAAGGTTCCAACCGTTCAGGACGTACCCTGAGGAAACGGCGCCAGCGCTACGTGGAGAAGGATGGCAAGTGCAACGTGCATCACGGCAACGTGCGCGAGAAATACCGCTACATGACAGACATCTTCACTACCCTGGTGGACCTGAAGTGGCGCTTTAACCTGCTGGTGTTCACCCTGGTCTACACAACCACCTGGGTGTTCTTCGGTCTCATCTGGTGGCTCATCGCCTACATCCGCGGAGACCTGGACCACACCGATGATGGAGACTGGATCCCCTGCGTGAACAACCTCAACGGCTTTGTCTCCGCCTTTCTCTTCTCCATCGAGACGGAGACCACCATCGGCTACGGCTACCGGGTCATCACTGATAAATGCCCAGAGGGGATTCTCCTGCTTTTAGTCCAGGCCATCCTGGGCTCCATTGTTAATGCCTTCATGGTGGGATGCATGTTCGTCAAGATCTCCCAGCCAAAGAAGCGAGCCGAGACTCTCATGTTCTCCCACAAGGCGGTGATCTCTGTGAGGGACAGCAAGCTGTGTCTGATGTTCAGGGTCGGAGACCTGAGGAACTCACACATCGTGGAGGCCTCCATCCGGGCCAAGCTGATCCGCTCCAAGCAGACCAAGGAAGGGGAGTTTATCCCTCTCAATCAGACGGATATCAATGTGGGCTTCGATACGGGGGACGACAGGCTCTTCCTGGTGTCGCCACTCATCATCTGTCACGAGTTCAACGAGGGCAGTCCCTTCTGGGAGATCTCACAGGaacagctggagagagaggagtttgAGGTAGTGGTCATCCTGGAGGGCATGGTGGAAGCCACAGgcatggatgtgcctcagggccaaaagggcacagcatggaggcgtcgctgtgttctcTGCAAAATTAAGTCCCCCACCCCCGAtgttgtgcatcgccccacggacctcccggttgcggccggttacgacagagcttgagcgggaacccagagtctctggtgacacagctggcgctgcagtacagcacccttaaccactgcgcca
>XM_021625772.2
GCAAGCCTAGTCAGTTCCTTCGCGCACAATGAACTGTAGACTACAGCTGGCTGTTACGTCCAGTCTGTGAGACCGGGGTGGGCTACAAGAGGAACAAAAAAGTGACAGTTTACTGTGGTGGTCTTACTTACAGCTTTAAATCCGCCACCTGATCTGCTATGGCAGCGATCATGGGACTCTCAAATCCAGTTCGGAAAGAAGGAATAAGATGCGTTGATATGTGGACACGCACTGGCGGCGCGCTCTGTGATCGTGTTTGATGTAACCTACCTTTAACAGGTACTGGTCAGAGCTCGTGCAGACGTGTCGAACCAAGCACTGTTGTAGAACCGAGCTAGAAAGCGTACTGTTTGGGGCCAGAAACAGCGACTGTGGCCCAACGCTTTGAGGCCATGAATTGCTTCAAAAGGCGTTTTGGACAGGATGTGGAGAAACAGGACCAAAAGCTGTCAAAACCAAGATGGGATACACCCAAAAACAAGGTGCCCACAGACCGGACCATGGTGGTGGGTGGCAGGCAAGGTGGGGCCTGTAAAGGTTCCAACCGTTCAGGACGTACCCTGAGGAAACGGCGCCAGCGCTACGTGGAGAAGGATGGCAAGTGCAACGTGCATCACGGCAACGTGCGCGAGAAATACCGCTACATGACAGACATCTTCACTACCCTGGTGGACCTGAAGTGGCGCTTTAACCTGCTGGTGTTCACCCTGGTCTACACAACCACCTGGGTGTTCTTCGGTCTCATCTGGTGGCTCATCGCCTACATCCGCGGAGACCTGGACCACACCGATGATGGAGACTGGATCCCCTGCGTGAACAACCTCAACGGCTTTGTCTCCGCCTTTCTCTTCTCCATCGAGACGGAGACCACCATCGGCTACGGCTACCGGGTCATCACTGATAAATGCCCAGAGGGGATTCTCCTGCTTTTAGTCCAGGCCATCCTGGGCTCCATTGTTAATGCCTTCATGGTGGGATGCATGTTCGTCAAGATCTCCCAGCCAAAGAAGCGAGCCGAGACTCTCATGTTCTCCCACAAGGCGGTGATCTCTGTGAGGGACAGCAAGCTGTGTCTGATGTTCAGGGTCGGAGACCTGAGGAACTCACACATCGTGGAGGCCTCCATCCGGGCCAAGCTGATCCGCTCCAAGCAGACCAAGGAAGGGGAGTTTATCCCTCTCAATCAGACGGATATCAATGTGGGCTTCGATACGGGGGACGACAGGCTCTTCCTGGTGTCGCCACTCATCATCTGTCACGAGTTCAACGAGGGCAGTCCCTTCTGGGAGATCTCACAGGaacagctggagagagaggagtttgAGGTAGTGGTCATCCTGGAGGGCATGGTGGAAGCCACAGgaATGACATGCCAGGCGCGCAGCTCCTACCTAGACTCAGAGGTCATGTGGGGGGAGCGCTTCACCCCTGTGCTCTCCCTAGAGGAGGGCTTCTACGAGGTGGACTATGAATCCTTTCACCACACCTACCCTACCCCGACCCCCACCTGCTCTGCCCAAGAGCTGGCCGAGCTGGCCAAGAAGGGAGAGGCCATCCCCCTACCTCCCCAGTCCCCACCTCCAGTCCTGGAGCCACCCCCACCAGGTCCAGagaaggaggaagacagaggggaggaagaggttGGGGTGGAGGAActaggggatggagagggggataaCATTAGCAATGGAGATGCCAACAGGATGGGTGATGGGTATGAATGAGTGTGCATTGGTGAAAACACAAACCATGTTATCCGAGGATGCTGCTCACTGGTTTAAAACAAGTTCATACATGGAAACAAGGCTACAAGAAGTAAGATTTCAAAACCACAACATCATGAAGATAGGCAAGAAGTACTTGTGCAAGTGACTCAATGTCTCAAATGGCTTTGATATCAAACTTCATCAACTGATGAGTGTCAAACATAAACTATGATATACTATAGTTTTTGACTACTATTAGAGGGACCAAAGGTAAGTCTTCACACGGACTCATCATTTTTTTATTACAGCATTTAGTGCCAATATTCTGATCTAAAACAACTTGAATAACTGGGTAAATATGATTTTAAAAGTTTCAAATAATGGTATGTAAATGATTGAATACTTTGTACTAGACTAGAGCAATGTGTGTAAGAATGAATGTGAAAGAGGATGAATTAAAGGAGGCCTGGCCAAATGCCCATTCATTTCAAGTATTTTGATACACACGTTTTGCTTACATGTGTTCATTTTCGTGAATGAATATTGACCTTGTATTCAAATCTTAAATCCCCAAGTTTGAAAGGCCTTTGCCTTTGAATGAATTGTTTAAAGTTATGGTTTGGATTTCTTGCACCATTTTGTTGGCTTCACAAATGATCCTGTTCAAGGCATTTTGGAAGGGTTTGCTATTAGTGGGCGTTGGCAACCACCTAATAAATAATTGAGCGCTTATCATGGAAATTGAAATAATTGAAGccttttttg

Function

NR:

description
G protein-activated inward rectifier potassium channel 4-like isoform X1

GO: NA

KEGG:

id description
K05000 KCNJ6, KIR3.2; potassium inwardly-rectifying channel subfamily J member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943200.1 False 1567 mRNA 0.55 5 24296167 24317057
XM_021625772.2 True 2471 mRNA 0.49 5 24296169 24320738

Neighbor

gene id symbol gene type direction distance location
LOC110538776 LOC106605668 coding upstream 25761 24260388 ~ 24270406 (+)
LOC110538747 LOC106578439 coding upstream 57489 24201099 ~ 24238678 (+)
LOC110538727 LOC106605639 coding upstream 95933 24190890 ~ 24200234 (+)
LOC110538661 LOC106605634 coding upstream 171353 24106644 ~ 24124814 (+)
tmem147 LOC106605633 coding upstream 215152 24077675 ~ 24081015 (+)
LOC110538837 fbrl coding downstream 17987 24338725 ~ 24342581 (+)
LOC110538803 LOC106605641 coding downstream 23143 24343881 ~ 24467486 (+)
LOC118938711 NA coding downstream 148722 24469460 ~ 24472368 (+)
LOC110538847 LOC106578478 coding downstream 155552 24476290 ~ 24480163 (+)
LOC110538870 LOC106578482 coding downstream 187672 24508410 ~ 24524635 (+)
G124176 NA non-coding upstream 39671 24256196 ~ 24256496 (+)
G124175 NA non-coding upstream 40116 24255745 ~ 24256051 (+)
G124170 NA non-coding upstream 43078 24250939 ~ 24253089 (+)
G124146 NA non-coding upstream 45767 24245563 ~ 24250400 (+)
G124118 NA non-coding upstream 118473 24177290 ~ 24177694 (+)
G124225 NA non-coding downstream 3560 24324298 ~ 24324536 (+)
G124228 NA non-coding downstream 7201 24327939 ~ 24328279 (+)
G124229 NA non-coding downstream 8059 24328797 ~ 24329007 (+)
G124249 NA non-coding downstream 53447 24374185 ~ 24374593 (+)
G124121 LOC106605585 other upstream 147574 24146861 ~ 24148593 (+)
LOC110538497 LOC106605627 other upstream 414531 23861576 ~ 23881639 (+)
G123980 NA other upstream 470665 23824693 ~ 23825502 (+)
G122459 LOC106578191 other upstream 1484904 22810767 ~ 22811263 (+)
apoc4 NA other upstream 1946231 22348543 ~ 22349936 (+)
LOC110538915 LOC106605649 other downstream 220266 24540963 ~ 24544247 (+)
G124451 LOC106578403 other downstream 552313 24873051 ~ 24873834 (+)
LOC110534557 LOC106605501 other downstream 1056746 25377221 ~ 25396334 (+)
G125934 NA other downstream 1362142 25682880 ~ 25757853 (+)
G126387 LOC105417071 other downstream 1729112 26049850 ~ 26050104 (+)

Expression


Co-expression Network