LOC110538837 (fbrl)


Basic Information

Item Value
gene id LOC110538837
gene name fbrl
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24338725 ~ 24342581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625819.2
GGTGTATCATGGGAAGGAGGAGTCTTATGACACATGGTCACTTTATTACGTAGTTTCTGCTGAGTCTTCACAAGAAGGTAGAAGAGAAAACCGGTTAAGCAAATTCGAGCTGTTTTAGATTGAGAGCACAGCAATCGACAAAATATGCCACCAGGATTCAGCCCCCGGGGTGGTGATCGAGGAGGCAGAGGAGGCTTCCGAGGAAGAGGAAGCTTTGGAGACAGAGGTGGTGGACGGGGAGGTTTTGGAGATAGAGGGGGACGGGGAGGGTTCAGAGGAAGAGGTGGTGGAGGTGGATTTAGGTCTCCAAGTGGCGAGGGTGGCTTCAGAGGCCGTGGAGGTGGTCGTGGCACCCCCAGGGGTAGAGGTGGACGCGGGGGCTTCGGCGCAGGCCGGAAAGTCACAGTGGAGCCTCATAGACATGAAGGTGTGTTCATCTGCCGTGGTAAGGAGGATGCCCTGGTGACAAAGAACATGGTAATTGGAGAGTCTGTGTATGGAGAAAAAAGGATGAATGTCGAGGAAGGAGAAACGAAGATTGAGTACAGAGCGTGGAACCCTTTCCGGTCAAAGCTGGCAGCAGCCATCTTGGGAGGAGTTGACCAGATCCACATCAAACCTGGCTCGAAGGTCATGTACCTGGGAGCTGCATCAGGGACGACAGTGTCCCACGTATCAGACATCGTTGGACCTGAGGGTCTTGTGTATGCTGTAGAGTTCTCTCACAGGTCAGGGCGTGATCTACTCAACGTTGCCAAAAAGAGAACCAATATCATTCCCATCATTGAGGACGCCCGGCATCCACACAAATACCGCATGCTTGTTGGCATGGTAGATGTCATCTTCGCTGATGTGGCCCAGCCTGATCAGACCAGAATTGTTGCACTCAACGCCCACAACTTCCTCAAGAACGGAGGGCACTTTGTCATCTCAATCAAGGCAAACTGCATTGACTCAACGGCAGCACCAGAGGCTGTGTTTGCTGCGGAGGTGAAGAAGATGGGCTCAGAAAACATGAAGCCCCAGGAGCAGCTGACACTGGAGCCTTATGAGAGAGATCACGCCATCGTAGTAGGAATCTACAGGCCTGCCCCCAAGAATAAGAAGTGAACTGGCCCTTACCAGCTGTGGCATAGTGACTTTTTCTGTGGACCCACCTCtgccatgagggggggggggtgcccaGCACCGGGGCACTGATTGGACCCCCACATGCTTACACCCATATCCGAACTGACCATTTTAGTGTTGCTGTCTCCAGAGCTCGGACAGTTGCTTGTCTGTCGCTTTAGACGTACCTAACTGTTTTTGTGTCTGGGGAGAGGGTGTTGGGGTGGAAATCACTTGCTAATTAACTCTGTAGTGCCATGTAAAGTACTGTACAGAGGGAAAGCTTGATATGTTGATTTAACTTTTTTAGGGTTTTGTTTAATATTTACATATGTAATCTTATGCTTTTTAAAGAGCAACTATTTCTGTTTATCATTGAAGTCAAAGACAATTGTTTTTCCTTGATGTTAAAACAAGACTATGGCTTACACCTACCTA

Function

NR:

description
rRNA 2-O-methyltransferase fibrillarin

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0005730 nucleolus cellular_component
GO:0008168 methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14563 NOP1, FBL; rRNA 2'-O-methyltransferase fibrillarin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625819.2 True 1548 mRNA 0.50 8 24338725 24342581

Neighbor

gene id symbol gene type direction distance location
LOC110538793 LOC106605640 coding upstream 17987 24296167 ~ 24320738 (+)
LOC110538776 LOC106605668 coding upstream 68319 24260388 ~ 24270406 (+)
LOC110538747 LOC106578439 coding upstream 100047 24201099 ~ 24238678 (+)
LOC110538727 LOC106605639 coding upstream 138491 24190890 ~ 24200234 (+)
LOC110538661 LOC106605634 coding upstream 213911 24106644 ~ 24124814 (+)
LOC110538803 LOC106605641 coding downstream 1300 24343881 ~ 24467486 (+)
LOC118938711 NA coding downstream 126879 24469460 ~ 24472368 (+)
LOC110538847 LOC106578478 coding downstream 133709 24476290 ~ 24480163 (+)
LOC110538870 LOC106578482 coding downstream 165829 24508410 ~ 24524635 (+)
LOC110538900 LOC106605648 coding downstream 183165 24525746 ~ 24532113 (+)
G124229 NA non-coding upstream 9718 24328797 ~ 24329007 (+)
G124228 NA non-coding upstream 10446 24327939 ~ 24328279 (+)
G124225 NA non-coding upstream 14189 24324298 ~ 24324536 (+)
G124176 NA non-coding upstream 82229 24256196 ~ 24256496 (+)
G124175 NA non-coding upstream 82674 24255745 ~ 24256051 (+)
G124249 NA non-coding downstream 31604 24374185 ~ 24374593 (+)
G124268 NA non-coding downstream 130693 24473274 ~ 24473563 (+)
G124270 NA non-coding downstream 137684 24480265 ~ 24492460 (+)
G124272 NA non-coding downstream 151321 24493902 ~ 24513744 (+)
G124121 LOC106605585 other upstream 190132 24146861 ~ 24148593 (+)
LOC110538497 LOC106605627 other upstream 457089 23861576 ~ 23881639 (+)
G123980 NA other upstream 513223 23824693 ~ 23825502 (+)
G122459 LOC106578191 other upstream 1527462 22810767 ~ 22811263 (+)
apoc4 NA other upstream 1988789 22348543 ~ 22349936 (+)
LOC110538915 LOC106605649 other downstream 198423 24540963 ~ 24544247 (+)
G124451 LOC106578403 other downstream 530470 24873051 ~ 24873834 (+)
LOC110534557 LOC106605501 other downstream 1034903 25377221 ~ 25396334 (+)
G125934 NA other downstream 1340299 25682880 ~ 25757853 (+)
G126387 LOC105417071 other downstream 1707269 26049850 ~ 26050104 (+)

Expression


Co-expression Network