LOC118938711


Basic Information

Item Value
gene id LOC118938711
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24469460 ~ 24472368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035965.1
ATGACCCATTACAAGAGTTGGCAAGTTGATTTTAAGGTGCAGAGAATGAGGGGAAAATATTGTTCTCAACATCTAGAGAGATGGGAACAATTGTCGTCAGAAGAGAGCTACATGCTTGGGGAGCCAATGTACTTCAAAGCTTATGCAGCTTTTGTCCCCAGAGATGGGTGTGTTTGTTGATTCCTGCTTTGTTACGACATCCAAGGACCCACATACCACACCCCGCCATGAAGTAATTCACAACTTTGGGTAATCAGACACTTAAGTTCTCACACACTGATGTAGCTATAGCATTTGTATCTATTCTAGTGGTGGGTATATCCGCGTGTATGTGTTTTAGATGTATGGTGGACAGCAAGCGGAAAGGCAGTCAGTCTCTGTTCTTCTCCCGAGAGTCAAATGTCCTGCGTTTCACTGGATGCGTTCCTGTTCCCCCAAAGCCTAACCATGGCAGTGATATGTGATTTTATGGTAAACAAATGTTTCCACAACGGTAGTGAATAGTGATTTATATAATCCGTACTCTGTTCCACAGCGCCTCTACCTGCACTGTACTATGACTGTCATGAAATCCACTTGAGAGCGCAGCGCCAAATCACGTACAATAGCACAGTGGGAAGGTTAACTGTCTTTTTAGAGTCTCAACAGTAACCTCGACCAATCTGATCTATTTCTATATCCAGTgctgggaaaagtacccaattgtcatacttgattaaatgtaaagataccttaatactcaagtaaaagtaagtcacccagtaaaatactacttgagtaagtattttatttttaatatacttaagtatcaaaagtaaatgatAAACCTTTTCAAATTCCTTGTATTATGCCAACCAGACGGCACTATTTTATTtctggatagccaggggcacactgacataatttacaaacaaagcatttttgTTTAGTAAGCCTGGAAAATCAGAGACAGTGGTGATGACCGCGTAATCTCTTGATAAGTCTGTGAATTGGAACATTTTCTGTCCTGTTAAGCTCtctaaatgtaacgagtacttttgggtgtccggGAACATGTATGGGAGTAAAGCGGTTTTTTTTCTCCGGAATATCTGTAGTAAAATAAAAAGTTgtcaatataaatagtaaagtacaggtaTCCCCAAAAAGTTgtacttaaaagtattttttactttacGCCACTGTCAATCAATCATTCGCTCAATAATTACGTCACAAGTTACATAGACGGTGGTCATGATCAGTGTGTAGGACGCTGATAATAATAAAATCATTAAGTCATTTAGTTGTCATGCATTGTTTTTTGCACTGGTTAAGTAGAGGTTTATTCACTCGAAACCAAACGGAAGCTAACGAAACAGGGAgagacctacctgaatttgtccaatagaaactcgttTACTCCAAACTGAAAtctccgttgcaaaacgttttggacGAATGATTACACCCCTGGTAGTTATGTCTTGTTAGGTGGGAGGAGCTGTATGGCCCTCACTCTGTGTGCTCCAACTGTGATTCTGTCTGTGACTTGCCAGAGTTTTGGCCAGCCTTGAAGTATCCTTCAGTGAAAAGCCTGATCACCAGTCAACCCTGGAGAGTTGGAGGACAGGGAGAAGAGTTTACCCATTCAGGCTGAGGAGAGACAGCCAAACAGCGAGGAAAGGGTGGAGGAGACCTTGGTAGTCACTtataaagaggaggagaaggtgaaGTTTGGCAGTCACTCCTTGGGAGGAGGAGAAAAACATATCAGTTGCTGTTATGAATAAGGTAGAGGGGTGCAGTAAGGGATAGAAGTGAGAGAGGGGGTGGTAGCCAGAAAAGAAGGGGGTGTGGAGGAGCCGATTGGGGACAAACAGGGCTGAGAAGGAGGTGGAGGCTGAAGAGAATGGCACAGGCCAAGTGACAGCAAGTGTAACTTTGGAACATGTACCCGAGGAGGAGATACCTGAGGGTACAGAGGTGGAGGTAAAGATTGGCAATATTCCTGAGGAGAATACTGTGGTTAAGGAGGTAGCTCAGTGGAACATGTTGCGTGTTGTCACCTCAAATGCTAAGGTGTCAAAGAAAGTTAAGGAGCAGGTTGCTGGCATAGAAGGATCAAAGGTTGAGAGAGTGGCGGTTGGACAGATGGCTTTGGTGGACGAAGCAGCAGCGTTTCTGCAGGGGTAAATGAAGCCTGCCGAGTGGAGAGAAGATTACCAAGGACCAGCCCTAGAGGAGCTGGGGAGGTTTTGGAAACCATCCACAAAGGACAAGCTTGCTGTGCTGGAAACTTCTGTCCCTATTGGAACATTGACATAAATTAACTTAAATATTTGATAAGAATTACACCTAAGTGTCCTTGTAGGATTGAATATTAAATTACTCTTGTTATAAGCTCTGAATGTTTTTATGGAAGCTGGACATTTGAGGGATTTATTTTTGTGTGGgtgtacagtggcttgtgaaagtattcacccccttggcattttttctattttgttgccttacaacctggaattaaaattgattttctttggggggggttattgtatcatttgatttacacaacatgcctaccactttgaagatgcaaaatatttgtgaaacaaacaagaaattagaCAAAACAGGAAACTTGAGGTTCCATAACTATTAtctatcccccccaccccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035965.1 True 2661 mRNA 0.42 3 24469460 24472368

Neighbor

gene id symbol gene type direction distance location
LOC110538803 LOC106605641 coding upstream 1974 24343881 ~ 24467486 (+)
LOC110538837 fbrl coding upstream 126879 24338725 ~ 24342581 (+)
LOC110538793 LOC106605640 coding upstream 148722 24296167 ~ 24320738 (+)
LOC110538776 LOC106605668 coding upstream 199054 24260388 ~ 24270406 (+)
LOC110538747 LOC106578439 coding upstream 230782 24201099 ~ 24238678 (+)
LOC110538847 LOC106578478 coding downstream 3922 24476290 ~ 24480163 (+)
LOC110538870 LOC106578482 coding downstream 36042 24508410 ~ 24524635 (+)
LOC110538900 LOC106605648 coding downstream 53378 24525746 ~ 24532113 (+)
LOC110538915 LOC106605649 coding downstream 68595 24540963 ~ 24544247 (+)
LOC110538932 stx12 coding downstream 76027 24548395 ~ 24556963 (+)
G124249 NA non-coding upstream 94867 24374185 ~ 24374593 (+)
G124229 NA non-coding upstream 140453 24328797 ~ 24329007 (+)
G124228 NA non-coding upstream 141181 24327939 ~ 24328279 (+)
G124225 NA non-coding upstream 144924 24324298 ~ 24324536 (+)
G124268 NA non-coding downstream 906 24473274 ~ 24473563 (+)
G124270 NA non-coding downstream 7897 24480265 ~ 24492460 (+)
G124272 NA non-coding downstream 21534 24493902 ~ 24513744 (+)
G124280 NA non-coding downstream 30586 24502954 ~ 24566300 (+)
LOC110534541 hace1 non-coding downstream 132706 24605074 ~ 24621417 (+)
G124121 LOC106605585 other upstream 320867 24146861 ~ 24148593 (+)
LOC110538497 LOC106605627 other upstream 587824 23861576 ~ 23881639 (+)
G123980 NA other upstream 643958 23824693 ~ 23825502 (+)
G122459 LOC106578191 other upstream 1658197 22810767 ~ 22811263 (+)
apoc4 NA other upstream 2119524 22348543 ~ 22349936 (+)
G124451 LOC106578403 other downstream 400683 24873051 ~ 24873834 (+)
LOC110534557 LOC106605501 other downstream 905116 25377221 ~ 25396334 (+)
G125934 NA other downstream 1210512 25682880 ~ 25757853 (+)
G126387 LOC105417071 other downstream 1577482 26049850 ~ 26050104 (+)

Expression


Co-expression Network