LOC110538900 (LOC106605648)


Basic Information

Item Value
gene id LOC110538900
gene name LOC106605648
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24525746 ~ 24532113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625878.2
cGCCCATGACAACATATGAGAAGGTCCAGACATTTGACAAAGTTTAGTGACAAAAACTCATGAATCATACGCTATGTGAGAACACATTTATAGGCAGAGCATAGGCGCGCTCTAAACTTCGCTCATCCACACTCACTTGAAGTACCGCGCAGCAGAGCAGCAGGGAAGTGCTGTGGTCTCTCGATCTTTTGGGAAAATAAAAGATGGTATCAGCTCTAACTCGTCTGCTGCTCATCACCTGCGTGATTCTACCTTTCAATGGAGCAGAGAAATTGAGAAAGGCACTTGACAGGAAGGATGTTGAATACgaaaagTGTACTGGAAACGATGCAGACAAACCAAACTGCACCAGAATCGCTGCTGAATCCGATTCAAGAACCTCTTATTTGAACAACATGtACAACAGCTGCCCCCAGGGTCCGGCTGGCACCCCTGGCAGGGAGGGTAACCCTGGCACCAATGGCATCCCTGGGACCCCTGGCATCCCGGGGCGCGATGGCATcaagggggagaaaggagagtgtgtgagtgaggtgTTTGAGGAGCCCTGGAAACCCAACTACAAGCAGTGTGCCTGGAACTCACTCAACTATGGGATCGACTTGGGCAAGATAGCTGACTGTACATTCACCAAGCTGCGTTCAGACAGTGCTCTGCGTGTGCTCTTCAGCGGCTCCCTGAGGCTGAAGTGTAAGACAGCCTGCTGCCAGCGTTGGTACTTCACCTTCAACGGAGCTGAGTGTACAGGACCTCTGCCCATTGAGTTCATCATCTACCTCGACCAAGGCAGCCCTGAGCTCAACTCTACCATCAACATACACAGAACCTCATCAGTTGAAGGGTTGTGTGAGGGGATCCGGGCAGGCCTGGTGGACGTGGCTATCTGGGTGGGGACCTGTGCTGACTACCCCAGAGGAGACGCATCTACAGGGTGGAACTCTGTATCCAGGGTCTTCATAGAGGAGCTGCCCAAATGAGGACATCTTTATTAAGTGATGGGACCAGGTCCCATAGAGAAAGAACCCCTAACAATCCTTCTGAAGCCTTTGACTACATATCAGTTTAGTTTCTGGATGGGTTCCTAGTCTTTGACAATGTCCTCTGGCCAATCAGACAACTTCAGTTGTGGCTAAATCCTACTACAATATCACTGATGTTCACTTGAATGTTTTGTACTACAGCACCTGGGTAGGGTCTAGTTTATTGGCCACCTGAAATTAGATGTATTCCTCATTAGTCCCATTCCTGTTTAATAAGGCAAGATTTTGAATTACTGTCAATTAAGTCATATATTATATGAATCATGCATTGTGTTACTCATTACACTATAACATGTTTTCCTATCGGATATATGTTTTTTGAAAATTGGTGAATTCATAAAGAAATGCATGGGTAGATATATTTTTCAAGTGACAAGTTAACACGACACAGCTTTAAAATTTTATCTGAAGCAAAAAAAGCTAACAAATGTTTTCCTATCAGAGAAGAACATCATTTGAACATTGGTTTATGCATTACCAGGTAAATGAATAAAGAAATGCAGGTGTTAATCTCTTTTTCCAAGTGAAAAGTGAACACAGGACAGCTGTTAAATGTAATCTGAAGCTACAAAAAGCTAACAAATGTTTTACTATCAGAGAAGTTTTGTTGAACATTGGTTTATGCATGACCAGGTGAATTCATTAAAAAATGAATGTGTTCATATCGTTTTGAAATGACAAGTGAACACAGCAAAATGTAAAATGATCTGAAATGAAAAAGCAACATAAAGCATTAAACTTTAGTAGAACATTTTATCTGAAAATGAACTAATGCCAATTCAACACTGATATTTCAGATTAAGACTTCTGAAATTAACATTATTTCAAAACGGTGCAA
>XM_021625883.2
GACAACATATGAGAAGGTCCAGACATTTGACAAAGTTTAGTGACAAAAACTCATGAATCATACGCTATGTGAGAACACATTTATAGGCAGAGCATAGGCGCGCTCTAAACTTCGCTCATCCACACTCACTTGAAGTACCGCGCAGCAGAGCAGCAGGGAAGTGCTGTGGTCTCTCGATCTTTTGGGAAAATAAAAGATGGTATCAGCTCTAACTCGTCTGCTGCTCATCACCTGCGTGATTCTACCTTTCAATGGAGCAGAGAAATTGAGAAAGGCACTTGACAGGAAGGATGTTGAATACgaaaagtACAACAGCTGCCCCCAGGGTCCGGCTGGCACCCCTGGCAGGGAGGGTAACCCTGGCACCAATGGCATCCCTGGGACCCCTGGCATCCCGGGGCGCGATGGCATcaagggggagaaaggagagtgtgtgagtgaggtgTTTGAGGAGCCCTGGAAACCCAACTACAAGCAGTGTGCCTGGAACTCACTCAACTATGGGATCGACTTGGGCAAGATAGCTGACTGTACATTCACCAAGCTGCGTTCAGACAGTGCTCTGCGTGTGCTCTTCAGCGGCTCCCTGAGGCTGAAGTGTAAGACAGCCTGCTGCCAGCGTTGGTACTTCACCTTCAACGGAGCTGAGTGTACAGGACCTCTGCCCATTGAGTTCATCATCTACCTCGACCAAGGCAGCCCTGAGCTCAACTCTACCATCAACATACACAGAACCTCATCAGTTGAAGGGTTGTGTGAGGGGATCCGGGCAGGCCTGGTGGACGTGGCTATCTGGGTGGGGACCTGTGCTGACTACCCCAGAGGAGACGCATCTACAGGGTGGAACTCTGTATCCAGGGTCTTCATAGAGGAGCTGCCCAAATGAGGACATCTTTATTAAGTGATGGGACCAGGTCCCATAGAGAAAGAACCCCTAACAATCCTTCTGAAGCCTTTGACTACATATCAGTTTAGTTTCTGGATGGGTTCCTAGTCTTTGACAATGTCCTCTGGCCAATCAGACAACTTCAGTTGTGGCTAAATCCTACTACAATATCACTGATGTTCACTTGAATGTTTTGTACTACAGCACCTGGGTAGGGTCTAGTTTATTGGCCACCTGAAATTAGATGTATTCCTCATTAGTCCCATTCCTGTTTAATAAGGCAAGATTTTGAATTACTGTCAATTAAGTCATATATTATATGAATCATGCATTGTGTTACTCATTACACTATAACATGTTTTCCTATCGGATATATGTTTTTTGAAAATTGGTGAATTCATAAAGAAATGCATGGGTAGATATATTTTTCAAGTGACAAGTTAACACGACACAGCTTTAAAATTTTATCTGAAGCAAAAAAAGCTAACAAATGTTTTCCTATCAGAGAAGAACATCATTTGAACATTGGTTTATGCATTACCAGGTAAATGAATAAAGAAATGCAGGTGTTAATCTCTTTTTCCAAGTGAAAAGTGAACACAGGACAGCTGTTAAATGTAATCTGAAGCTACAAAAAGCTAACAAATGTTTTACTATCAGAGAAGTTTTGTTGAACATTGGTTTATGCATGACCAGGTGAATTCATTAAAAAATGAATGTGTTCATATCGTTTTGAAATGACAAGTGAACACAGCAAAATGTAAAATGATCTGAAATGAAAAAGCAACATAAAGCATTAAACTTTAGTAGAACATTTTATCTGAAAATGAACTAATGCCAATTCAACACTGATATTTCAGATTAAGACTTCTGAAATTAACATTATTTCAAAACGGTGCAA

Function

NR:

description
PREDICTED: collagen triple helix repeat-containing protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625878.2 False 1878 mRNA 0.43 5 24525746 24532113
XM_021625883.2 True 1787 mRNA 0.43 4 24525753 24532113

Neighbor

gene id symbol gene type direction distance location
LOC110538870 LOC106578482 coding upstream 1111 24508410 ~ 24524635 (+)
LOC110538847 LOC106578478 coding upstream 45583 24476290 ~ 24480163 (+)
LOC118938711 NA coding upstream 53378 24469460 ~ 24472368 (+)
LOC110538803 LOC106605641 coding upstream 58260 24343881 ~ 24467486 (+)
LOC110538837 fbrl coding upstream 183165 24338725 ~ 24342581 (+)
LOC110538915 LOC106605649 coding downstream 8850 24540963 ~ 24544247 (+)
LOC110538932 stx12 coding downstream 16282 24548395 ~ 24556963 (+)
LOC110538956 LOC106605651 coding downstream 36374 24568487 ~ 24570741 (+)
LOC110538967 LOC106605650 coding downstream 38971 24571084 ~ 24578116 (+)
LOC110534541 hace1 coding downstream 73067 24605074 ~ 24621417 (+)
G124272 NA non-coding upstream 12002 24493902 ~ 24513744 (+)
G124270 NA non-coding upstream 33286 24480265 ~ 24492460 (+)
G124268 NA non-coding upstream 52183 24473274 ~ 24473563 (+)
G124249 NA non-coding upstream 151153 24374185 ~ 24374593 (+)
G124363 NA non-coding downstream 176450 24708563 ~ 24708768 (+)
G124366 NA non-coding downstream 180949 24713062 ~ 24742173 (+)
G124437 NA non-coding downstream 312103 24844216 ~ 24844538 (+)
G124440 NA non-coding downstream 323524 24855637 ~ 24856057 (+)
G124121 LOC106605585 other upstream 377153 24146861 ~ 24148593 (+)
LOC110538497 LOC106605627 other upstream 644110 23861576 ~ 23881639 (+)
G123980 NA other upstream 700244 23824693 ~ 23825502 (+)
G122459 LOC106578191 other upstream 1714483 22810767 ~ 22811263 (+)
apoc4 NA other upstream 2175810 22348543 ~ 22349936 (+)
G124451 LOC106578403 other downstream 340938 24873051 ~ 24873834 (+)
LOC110534557 LOC106605501 other downstream 845371 25377221 ~ 25396334 (+)
G125934 NA other downstream 1150767 25682880 ~ 25757853 (+)
G126387 LOC105417071 other downstream 1517737 26049850 ~ 26050104 (+)

Expression


Co-expression Network