LOC110538932 (stx12)


Basic Information

Item Value
gene id LOC110538932
gene name stx12
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24548395 ~ 24556963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625904.2
CCGACAACCAACGTGTGACGTCACATTATGGGCTCGGTCTTAGATGAAATCTCATAATACGGAGACATAAACGGGAAACGACGCATTATACTGCAATCGCATTGAAAAGTGTGTCCAACAATTCAGTCCCCACTACGGAGTGTGACAGACGCCAGGAGCAAGGATGTCATATGGGAGAGCAGACAGCTACCACTCGCAGCCACCAGACTTCAGCAACCTCACCCAGACATGCAGTgtcaacatccagaaaatcacacagAATACTGGGCAGATCAAAAACATGCTGTACCAGATGGGGACGAGGCAAGAGACCCCAGAGCTGCAGGACAGACTCCAACAGGTACAGCACTACACCAACCAGCTGGCCAAAGAGACCAACAGACACCTGAAAGATCTGggctccctgcctctccctccctcggaACAGAGACAGCAGAAGATCCAGAAAGACCGACTGATGAATGACTTCTCTGCAGCGCTCAACAACTTCCAGGCAGTCCAGCGACGGGCGGCCGAGAAGGAGAGGGAATCAGTGGCCAGGGCCCGGGCCGGGTCCCGCCTCACGCAGGAAGACGAGGGGAACGTCGATGAACAACTTGTGACATTTGAAAAAGATGATGATGACTGGAGTCAGAGTCAGACCCAGCAGCTGGAGGAGCCAGAGGTCACAGAGGAGGACCTGGAGGTCatcaaggagagagagaccaacatcAGGCAGCTAGAGtctGACATCATGGATGTAAACCAGATCTTTAAGGACCTGGCAGTGATGATCCACGACCAGGGAGAGATGATCGACAGCATTGAGGCTAACGTGGAGAGTGCAGAGGTCCATGTAGACAGAGGGACCGGACAGCTCCAAAGGGCCGCCTACTACCAGAAGAAGTCCCGTAAGAGGATGTGTATGCTGGCCATGGTGGTGTCTCTGGTGGTCACCGTCCTGGCTATCATCATCTGGCAGGCCATCAaatgagaggacaggaagagCACCGGGGAAGGATTTTAATGGCACATCGCAATGACAGCCTAGAATGGCTTCCAATGGAGCGTctgagtgagtgaatgtgtgtgcgggtgtgcgtGCCGGTGTGCGTGCATGCTTTCAAGCAAGATATAGAGGCGTAAGGAATAGATTGTATAAATTCTCTTCCCTATCTGTATATATGATATACTAACTGATCTAACACAGCCCTGCACTTACTTCCATGTCAGCCATGCAAATCATCTCTGTCATCATTACATACATTACTGTGTTAGAATATGTCTTATCTAATGCAATGCTGCACAAGTTTGTATGTATATAAATGCCATGTGTACGGTTTGATATGGTTTATTTTCTGCCTCCCTATTCTCTTCATGTTGTAAATGTCTGATTCTCTTCCAGATGTCTTATAGTATTACCACAAGGACATGATGTAGTTGAGATAAGGAGGATTCCTTTGATAGCacacaaacaacaaacaaaatgatgatgatgatgatgattattattattatgctcACTTTCATTAATAAAATCAACTGTGCAACGAGTCCTGACTGTGTCACGCAGGGCTATGTACTTTCCACAAGATGGCGCTGTTATGCCTGTTGTAAGGTGCACAAGCATCATGTAGTCTACCATGCTTTTATTTAGCTATTAAACAAGTCAAGATATACCAAA
>XM_021625917.2
CCGACAACCAACGTGTGACGTCACATTATGGGCTCGGTCTTAGATGAAATCTCATAATACGGAGACATAAACGGGAAACGACGCATTATACTGCAATCGCATTGAAAAGTGTGTCCAACAATTCAGTCCCCACTACGGAGTGTGACAGACGCCAGGAGCAAGGATGTCATATGGGAGAGCAGACAGCTACCACTCGCAGCCACCAGACTTCAGCAACCTCACCCAGACATGCAGTgtcaacatccagaaaatcacacagAATACTGGGCAGATCAAAAACATGCTGTACCAGATGGGGACGAGGCAAGAGACCCCAGAGCTGCAGGACAGACTCCAACAGGTACAGCACTACACCAACCAGCTGGCCAAAGAGACCAACAGACACCTGAAAGATCTGggctccctgcctctccctccctcggaACAGAGACAGCAGAAGATCCAGAAAGACCGACTGATGAATGACTTCTCTGCAGCGCTCAACAACTTCCAGGCAGTCCAGCGACGGGCGGCCGAGAAGGAGAGGGAATCAGTGGCCAGGGCCCGGGCCGGGTCCCGCCTCACGGAAGACGAGGGGAACGTCGATGAACAACTTGTGACATTTGAAAAAGATGATGATGACTGGAGTCAGAGTCAGACCCAGCAGCTGGAGGAGCCAGAGGTCACAGAGGAGGACCTGGAGGTCatcaaggagagagagaccaacatcAGGCAGCTAGAGtctGACATCATGGATGTAAACCAGATCTTTAAGGACCTGGCAGTGATGATCCACGACCAGGGAGAGATGATCGACAGCATTGAGGCTAACGTGGAGAGTGCAGAGGTCCATGTAGACAGAGGGACCGGACAGCTCCAAAGGGCCGCCTACTACCAGAAGAAGTCCCGTAAGAGGATGTGTATGCTGGCCATGGTGGTGTCTCTGGTGGTCACCGTCCTGGCTATCATCATCTGGCAGGCCATCAaatgagaggacaggaagagCACCGGGGAAGGATTTTAATGGCACATCGCAATGACAGCCTAGAATGGCTTCCAATGGAGCGTctgagtgagtgaatgtgtgtgcgggtgtgcgtGCCGGTGTGCGTGCATGCTTTCAAGCAAGATATAGAGGCGTAAGGAATAGATTGTATAAATTCTCTTCCCTATCTGTATATATGATATACTAACTGATCTAACACAGCCCTGCACTTACTTCCATGTCAGCCATGCAAATCATCTCTGTCATCATTACATACATTACTGTGTTAGAATATGTCTTATCTAATGCAATGCTGCACAAGTTTGTATGTATATAAATGCCATGTGTACGGTTTGATATGGTTTATTTTCTGCCTCCCTATTCTCTTCATGTTGTAAATGTCTGATTCTCTTCCAGATGTCTTATAGTATTACCACAAGGACATGATGTAGTTGAGATAAGGAGGATTCCTTTGATAGCacacaaacaacaaacaaaatgatgatgatgatgatgattattattattatgctcACTTTCATTAATAAAATCAACTGTGCAACGAGTCCTGACTGTGTCACGCAGGGCTATGTACTTTCCACAAGATGGCGCTGTTATGCCTGTTGTAAGGTGCACAAGCATCATGTAGTCTACCATGCTTTTATTTAGCTATTAAACAAGTCAAGATATACCAAA
>XM_021625911.2
ACAACCAACGTGTGACGTCACATTATGGGCTCGGTCTTAGATGAAATCTCATAATACGGAGACATAAACGGGAAACGACGCATTATACTGCAATCGCATTGAAAATCCCCACTACGGAGTGTGACAGACGCCAGGAGCAAGGATGTCATATGGGAGAGCAGACAGCTACCACTCGCAGCCACCAGACTTCAGCAACCTCACCCAGACATGCAGTgtcaacatccagaaaatcacacagAATACTGGGCAGATCAAAAACATGCTGTACCAGATGGGGACGAGGCAAGAGACCCCAGAGCTGCAGGACAGACTCCAACAGGTACAGCACTACACCAACCAGCTGGCCAAAGAGACCAACAGACACCTGAAAGATCTGggctccctgcctctccctccctcggaACAGAGACAGCAGAAGATCCAGAAAGACCGACTGATGAATGACTTCTCTGCAGCGCTCAACAACTTCCAGGCAGTCCAGCGACGGGCGGCCGAGAAGGAGAGGGAATCAGTGGCCAGGGCCCGGGCCGGGTCCCGCCTCACGCAGGAAGACGAGGGGAACGTCGATGAACAACTTGTGACATTTGAAAAAGATGATGATGACTGGAGTCAGAGTCAGACCCAGCAGCTGGAGGAGCCAGAGGTCACAGAGGAGGACCTGGAGGTCatcaaggagagagagaccaacatcAGGCAGCTAGAGtctGACATCATGGATGTAAACCAGATCTTTAAGGACCTGGCAGTGATGATCCACGACCAGGGAGAGATGATCGACAGCATTGAGGCTAACGTGGAGAGTGCAGAGGTCCATGTAGACAGAGGGACCGGACAGCTCCAAAGGGCCGCCTACTACCAGAAGAAGTCCCGTAAGAGGATGTGTATGCTGGCCATGGTGGTGTCTCTGGTGGTCACCGTCCTGGCTATCATCATCTGGCAGGCCATCAaatgagaggacaggaagagCACCGGGGAAGGATTTTAATGGCACATCGCAATGACAGCCTAGAATGGCTTCCAATGGAGCGTctgagtgagtgaatgtgtgtgcgggtgtgcgtGCCGGTGTGCGTGCATGCTTTCAAGCAAGATATAGAGGCGTAAGGAATAGATTGTATAAATTCTCTTCCCTATCTGTATATATGATATACTAACTGATCTAACACAGCCCTGCACTTACTTCCATGTCAGCCATGCAAATCATCTCTGTCATCATTACATACATTACTGTGTTAGAATATGTCTTATCTAATGCAATGCTGCACAAGTTTGTATGTATATAAATGCCATGTGTACGGTTTGATATGGTTTATTTTCTGCCTCCCTATTCTCTTCATGTTGTAAATGTCTGATTCTCTTCCAGATGTCTTATAGTATTACCACAAGGACATGATGTAGTTGAGATAAGGAGGATTCCTTTGATAGCacacaaacaacaaacaaaatgatgatgatgatgatgattattattattatgctcACTTTCATTAATAAAATCAACTGTGCAACGAGTCCTGACTGTGTCACGCAGGGCTATGTACTTTCCACAAGATGGCGCTGTTATGCCTGTTGTAAGGTGCACAAGCATCATGTAGTCTACCATGCTTTTATTTAGCTATTAAACAAGTCAAGATATACCAAA

Function

symbol description
stx12 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in postsynaptic recycling endosome and synaptic vesicle. Predicted to be integral component of synaptic vesicle membrane. Orthologous to human STX12 (syntaxin 12).

NR:

description
syntaxin-12-like isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08488 STX7; syntaxin 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625904.2 False 1663 mRNA 0.48 10 24548395 24556963
XM_021625917.2 False 1660 mRNA 0.48 10 24548395 24556963
XM_021625911.2 True 1642 mRNA 0.48 10 24548398 24556963

Neighbor

gene id symbol gene type direction distance location
LOC110538915 LOC106605649 coding upstream 4148 24540963 ~ 24544247 (+)
LOC110538900 LOC106605648 coding upstream 16282 24525746 ~ 24532113 (+)
LOC110538870 LOC106578482 coding upstream 23760 24508410 ~ 24524635 (+)
LOC110538847 LOC106578478 coding upstream 68232 24476290 ~ 24480163 (+)
LOC118938711 NA coding upstream 76027 24469460 ~ 24472368 (+)
LOC110538956 LOC106605651 coding downstream 11524 24568487 ~ 24570741 (+)
LOC110538967 LOC106605650 coding downstream 14121 24571084 ~ 24578116 (+)
LOC110534541 hace1 coding downstream 48217 24605074 ~ 24621417 (+)
LOC118936392 NA coding downstream 65306 24622269 ~ 24684450 (+)
LOC110538989 NA coding downstream 128319 24685282 ~ 24723373 (+)
G124272 NA non-coding upstream 34651 24493902 ~ 24513744 (+)
G124270 NA non-coding upstream 55935 24480265 ~ 24492460 (+)
G124268 NA non-coding upstream 74832 24473274 ~ 24473563 (+)
LOC110538803 LOC106605641 non-coding upstream 165472 24343881 ~ 24467486 (+)
G124249 NA non-coding upstream 173802 24374185 ~ 24374593 (+)
G124363 NA non-coding downstream 151600 24708563 ~ 24708768 (+)
G124366 NA non-coding downstream 156099 24713062 ~ 24742173 (+)
G124437 NA non-coding downstream 287253 24844216 ~ 24844538 (+)
G124440 NA non-coding downstream 298674 24855637 ~ 24856057 (+)
G124121 LOC106605585 other upstream 399802 24146861 ~ 24148593 (+)
LOC110538497 LOC106605627 other upstream 666759 23861576 ~ 23881639 (+)
G123980 NA other upstream 722893 23824693 ~ 23825502 (+)
G122459 LOC106578191 other upstream 1737132 22810767 ~ 22811263 (+)
G124451 LOC106578403 other downstream 316088 24873051 ~ 24873834 (+)
LOC110534557 LOC106605501 other downstream 820521 25377221 ~ 25396334 (+)
G125934 NA other downstream 1125917 25682880 ~ 25757853 (+)
G126387 LOC105417071 other downstream 1492887 26049850 ~ 26050104 (+)
G126727 LOC106581475 other downstream 2069886 26626849 ~ 26628649 (+)

Expression


Co-expression Network