LOC110538956 (LOC106605651)


Basic Information

Item Value
gene id LOC110538956
gene name LOC106605651
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24568487 ~ 24570741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625928.2
CCCCGTCCCGATACCCAGGTCATATTTTAAGAGGTGATATAATCAAAACTTAGGGCGATTAAATGTTAGGGTGGAAGTCTCCGTGACGTTTCACTTATTCGTTTTCTCCTACCACCTCTCAGTTTTCTGAAAAGTGACGTGCTCCACACGCGCGACAATGGAAGCGCCAGAATTTTTCCCACCTTCTGAAAACTTGACGGCGGCTGTCGTGCACCCGCTATGCGAAGAATGGAAGGGGGGATCCGAGGGTGCCATCTTCCACCTCGCCAGTATCTTCCTTGTTTTGGGGTTCATGGGAGGGAGCGGGTTCTATGGGCTCCTCTACTTGTTTACCTTTCTGACGCTCGGTTTCTTCTGCACAACCATTTGGTCATGGTCGGACGCGTGCACCACCGACACCTTTTTGTGGAATTTCGCTCTCTTTGGGGTATGTGCGGTTCAAGTTGTGCACGTCGCCTACCGGCTGAGGAACGTTACTTTCGAAAAGGAGTTTCAAGATCTGTACAGCTACCTGTTCAAAAAGCTGGGGGTGTCGCTCACCCACTTCGGCAAGATAGTCGCCTGTTGTGAAGGGGACATCCACACTATAGAGAAAGACCACTGTTTTGCCATGGAGGGCAAGACTGCTATTGATAAGCTGTCCGTTCTTCTGTCCGGCAGAATTCGTGTGACAGTAAATGGAGAGTTTTTACATGACATATATCCTTTCCAGTTTCTCGATTCACCTGAATGGGACTCTCTCCGGCCGTCAGAGGAGGGAGTTTTCCAGGTGACCCTGCGTGCAGATAATTGCTGTAGATACGTTTCTTGGAGACGTAAGAAACTGTACCTACTCTTCGCCAAACACCGCTACATCGCCAAGGTCTTTGCGCTCGTGGTGCGGAATGACATCGCGGACAAGCTGTACTCCCTCAACGACAAGGCGTTCGACAGCCGCGGGTTCCGATATGATCTCCGGTTACCCACCTACTGTCACGTGTCCCCGTTGCCAGAATTAGACCGGACAGATGGGTTCCTACGAGTCCCAGCGCAATATGACCGTGGCCACCGTGGCCGTGTCCCTATAACTATAACAGCACCCGAAGAGACTGACTAGTGACTGGAACGGAacttttaaatgtttgtttttcattAATGGATGTTATTTTTGTCTGTTTGTTATCCTCAAGTCCTTAGGCTATGGATATGGCATAAACTATGTAGTTTACGCATCAGCATAGAATACATTGTAGCACATCAAGTAACCATCCACTTGGTTTGCCAGGCATCATGCaataggcgtgtgtgtgtgtgtgtgtgtgtggggggggggggggggggggggcgttgctGGCCCAGATTACAGTCCAACTCCGTAGTTATGATACGATTTCATTACACACTTTTCAGTTTAATTTCCAGCTCTACCACCACAgtatctctcccttctctccaaaGTAACTAAACAGTTATCAAAATACCAGTGAAATGTTACCCCCAGAATTCCTGTTTATGTTTTATAGTGTACTTTACTACCTGTCTGTCTTAAATTGAGACTGTATATTCAATTGCCTTACTGAGTTTTTTTTGTCAATATTTGTGTTTAATCATAAAAAAGTATTAACAATG

Function

NR:

description
popeye domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625928.2 True 1608 mRNA 0.47 3 24568487 24570741

Neighbor

gene id symbol gene type direction distance location
LOC110538932 stx12 coding upstream 11524 24548395 ~ 24556963 (+)
LOC110538915 LOC106605649 coding upstream 24240 24540963 ~ 24544247 (+)
LOC110538900 LOC106605648 coding upstream 36374 24525746 ~ 24532113 (+)
LOC110538870 LOC106578482 coding upstream 43852 24508410 ~ 24524635 (+)
LOC110538847 LOC106578478 coding upstream 88324 24476290 ~ 24480163 (+)
LOC110538967 LOC106605650 coding downstream 343 24571084 ~ 24578116 (+)
LOC110534541 hace1 coding downstream 34439 24605074 ~ 24621417 (+)
LOC118936392 NA coding downstream 51528 24622269 ~ 24684450 (+)
LOC110538989 NA coding downstream 114541 24685282 ~ 24723373 (+)
ascc3 ascc3 coding downstream 580275 25151016 ~ 25291524 (+)
G124280 NA non-coding upstream 2187 24502954 ~ 24566300 (+)
G124272 NA non-coding upstream 54743 24493902 ~ 24513744 (+)
G124270 NA non-coding upstream 76027 24480265 ~ 24492460 (+)
G124268 NA non-coding upstream 94924 24473274 ~ 24473563 (+)
LOC110538803 LOC106605641 non-coding upstream 185564 24343881 ~ 24467486 (+)
G124363 NA non-coding downstream 137822 24708563 ~ 24708768 (+)
G124366 NA non-coding downstream 142321 24713062 ~ 24742173 (+)
G124437 NA non-coding downstream 273475 24844216 ~ 24844538 (+)
G124440 NA non-coding downstream 284896 24855637 ~ 24856057 (+)
G124121 LOC106605585 other upstream 419894 24146861 ~ 24148593 (+)
LOC110538497 LOC106605627 other upstream 686851 23861576 ~ 23881639 (+)
G123980 NA other upstream 742985 23824693 ~ 23825502 (+)
G122459 LOC106578191 other upstream 1757224 22810767 ~ 22811263 (+)
G124451 LOC106578403 other downstream 302310 24873051 ~ 24873834 (+)
LOC110534557 LOC106605501 other downstream 806743 25377221 ~ 25396334 (+)
G125934 NA other downstream 1112139 25682880 ~ 25757853 (+)
G126387 LOC105417071 other downstream 1479109 26049850 ~ 26050104 (+)
G126727 LOC106581475 other downstream 2056108 26626849 ~ 26628649 (+)

Expression


Co-expression Network