LOC110538967 (LOC106605650)


Basic Information

Item Value
gene id LOC110538967
gene name LOC106605650
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24571084 ~ 24578116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625937.2
TCCCCCTGTTGGCGTGCCTGGACTTTGCAGGTGCGCAGCGGCGGGTTGTGTTGACTGCTGTCCCCTCGCCTCTTGCCCATTTTAGTCAATGCCTGTCAGCACGCTGGAATGTGCGAATCACATTGTGCAGTCCCCCAGCTCGCGAGGACCTTACATTTATAGCTCCTCAATACTTGTCCATTGTATTCTATTCCTGATCGATTGTTGTCAGATTGgTGAGGATCAGGATGTCTTCCTCTCCGGAGATGACCAGTAGCCTGTTCTACACCACCCTGGCCCCCCTGCGGTCGGCAGTCCCTGGGTCTGTACCCGGGGCTGGAGGTGGAGGTCTGGTGATGCCCACCATGGAGCCCAACATAACCTCCTGTGAGGAGTGGGAGGAGGCCCACCACCTGCTCTTCCACCTGGggaacctgtctctcctcctgggCCTGGTCATCCCCACCACCCTGACCCTGCACATGATCCTGCTGCGCCTCATGCTGATGACAGGAAGCTGTCTGTTCATCACTTGGGCAACGCTGTACCGGTGTAATCTGGATGTCATGGTGTGGAACGTGGTCTTCCTGCTGGTCAACTTCATGCACTTCTTCTACCTGGTCTACAAACGCAGACCTATTAAGATTGACAGGGAGCTGAAGTCAGTGTACAAGCGGATGTTTGAGCCTCTTCACGTGCGCGAGGCCCTGTTCCAGAGACTGACGGGCCAATTCTGCACCATCCAGAGCCTGAAGAAGGGACAGGTGTATGCTGCCGAGGACAAGACCTCTGTGGATGAGCGCCTCAGTATCCTCCTTAAAGGAAAAATGAAGGTGTCATATCGTGGTCATTTCCTCCATAACATCTACACCAATGCCTTCATCGACTCCCCTGAGTTCAGATCAACCCagatgaacagaggagaaaaaTTCCAGGTGACCATCATGGCGGAGGAGAACTGTAAGTTCCTATGTTGGTCCAGAGAGAGGCTCACCTACTTCCTGGAGTCTGACTCCTTCCTGAACGAGGTGTTCAGGTACCTCATTGGCAAAGACATCACCAACAAGCTGTACTCGCTCAACGACCCCACTCTCACTGACAAGGCAGCGAAGAAGATGGAGCGTCAGCCCAGCCTGTGCTCCCAGGTCTCTATGATGCAGATGAGGAACAGCATGGGCAGCACCAGTGACACCGGTGACATCCTGAACCAGATCCACCGTGGAGGCTCCAGTGAATCCTCACATCAAAAATCCCCTGGCTCCAACACATCCAAAACGATGAAGCCCATTGAAGAACAACTGGAAAATGACGTCTTTACAGAGTCTGAGCCAGACTCTCCTGTTAAGAAACGCCACACCCACTCGACAGCCATAGAGGTGTAAGATGTGACATTATCCTACAACAACAGTGCTGACCACCCACCTATATTGTAATCTGATACAGACCCTGGTTAGTTATGGTAGAATAACTTACAACAATAGCTTGAAAAAGGCTTTTACATGATCAAAATATCTATCTACGTGTATCTAGAaaacagaactgcacattttggcATCTCACTTTGTCTTGTAGTGTTTGGTATTATTGTGAGTTTGTCGCTGTTGTACTTCTGAAATCCTGTTTGATTGGATGTTGTACAATGCCTTTGCAGTTCATTCCTACACAGTGAGAGTTCACAAAAGTATTACGTGTCACAACCAAAACATTTTAGTGTAAGCACAACCTCTGAGGAAGGTTTCTTTTAAACCTTTGACTCATTGTGTGATAAATTCTCTTATTTATGCACTGAGCTTCTGCACGGTTGTGTGTTGATGAATGTAGAGATCTAACAAGTTAAATCTTCTGGTCATTGCTAACCATTTGAGGCTGTTATGCTGTTTTTTTCACGGCTATAAGCACACAAGCTTGGGATCACTCTTTTATGCCATGATCGTTACCTTATATTAATTACTCAGAGGGAACACTTGAAAAAGAAATTAACAGTAGACCTCTGCTTTTTATCCTCTAGCGCCCTCTAGGAGCTATCATGAGTACTACCGGTTTCTTTTCTCATTCTGAACTCCTGTCACTGTTTAAACCAGGTCAATgttcaaactcattccatggagggcatgttttggtttttcctttcaaatgagatctagacaaccaggtgagggaagttctttactaattagtgaccgtaattcatcaatcaagtacgaGGAGCCAAACAGAAACTCGGCCCttcgtggaatgagtttgacacgtggttTAAACTGTCACATCCCTGAAAGATCAACCAGACCAAAAGAAGATGTAAGCAACAGGTTTTATTATTTCAGTCAAATAAACCTTTTGAATATCCAGACAAA

Function

NR:

description
blood vessel epicardial substance-like

GO:

id name namespace
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0061436 establishment of skin barrier biological_process
GO:0070830 bicellular tight junction assembly biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0090136 epithelial cell-cell adhesion biological_process
GO:0040017 positive regulation of locomotion biological_process
GO:0001921 positive regulation of receptor recycling biological_process
GO:0008360 regulation of cell shape biological_process
GO:0090504 epiboly biological_process
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016328 lateral plasma membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K21108 BVES; blood vessel epicardial substance

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625937.2 True 2333 mRNA 0.47 8 24571084 24578116

Neighbor

gene id symbol gene type direction distance location
LOC110538956 LOC106605651 coding upstream 343 24568487 ~ 24570741 (+)
LOC110538932 stx12 coding upstream 14121 24548395 ~ 24556963 (+)
LOC110538915 LOC106605649 coding upstream 26837 24540963 ~ 24544247 (+)
LOC110538900 LOC106605648 coding upstream 38971 24525746 ~ 24532113 (+)
LOC110538870 LOC106578482 coding upstream 46449 24508410 ~ 24524635 (+)
LOC110534541 hace1 coding downstream 27064 24605074 ~ 24621417 (+)
LOC118936392 NA coding downstream 44153 24622269 ~ 24684450 (+)
LOC110538989 NA coding downstream 107166 24685282 ~ 24723373 (+)
ascc3 ascc3 coding downstream 572900 25151016 ~ 25291524 (+)
LOC110534548 LOC106579462 coding downstream 716527 25294643 ~ 25325656 (+)
G124280 NA non-coding upstream 4784 24502954 ~ 24566300 (+)
G124272 NA non-coding upstream 57340 24493902 ~ 24513744 (+)
G124270 NA non-coding upstream 78624 24480265 ~ 24492460 (+)
G124268 NA non-coding upstream 97521 24473274 ~ 24473563 (+)
LOC110538803 LOC106605641 non-coding upstream 188161 24343881 ~ 24467486 (+)
G124363 NA non-coding downstream 130447 24708563 ~ 24708768 (+)
G124366 NA non-coding downstream 134946 24713062 ~ 24742173 (+)
G124437 NA non-coding downstream 266100 24844216 ~ 24844538 (+)
G124440 NA non-coding downstream 277521 24855637 ~ 24856057 (+)
G124121 LOC106605585 other upstream 422491 24146861 ~ 24148593 (+)
LOC110538497 LOC106605627 other upstream 689448 23861576 ~ 23881639 (+)
G123980 NA other upstream 745582 23824693 ~ 23825502 (+)
G122459 LOC106578191 other upstream 1759821 22810767 ~ 22811263 (+)
G124451 LOC106578403 other downstream 294935 24873051 ~ 24873834 (+)
LOC110534557 LOC106605501 other downstream 799368 25377221 ~ 25396334 (+)
G125934 NA other downstream 1104764 25682880 ~ 25757853 (+)
G126387 LOC105417071 other downstream 1471734 26049850 ~ 26050104 (+)
G126727 LOC106581475 other downstream 2048733 26626849 ~ 26628649 (+)

Expression


Co-expression Network