LOC110538978 (LOC106605653)


Basic Information

Item Value
gene id LOC110538978
gene name LOC106605653
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24584393 ~ 24601385 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943353.1
CTAAACCCTACCCTAATCTTAACATCTACCTTTActttaaccctaatcttaaccataACCCATACTAAACCCTATCCTTAACCACTACCGtaaccattttacatttcaacttcaaaTGGTTAGGAACATCCTAAGGATCCCTGATTGCACGGACCGAACAAAATAGTCGCTAGAAAGCATGTAAATTGACAGAGTCACGTGAACAGAGCAAGAGAAATCCATAGAAGAATATGCTGAAAATCTATGGGGGAACGCACGTTGGATCATGCACGCAAAAGTATGGTCGCTCGAATCAGAATATTCGACTGACGCAGAGGAATAAACAATATCAAGACCAGCAGGGCTTATATCACCGAAGTTTGGAGCGGAAACTTGGCAGGGAAACATGGCCGAAGGAGGGGTGGGCAAAGGTGGTGATAGAGGAGAGGAGCCAGGATCCTTGCAGGGTGGGCAGCAACAGTCCATGCACGGCGCAGGCCACTGCAAGTGGTTCAATGTGCGGATGGGCTTCGGATTTATATCCATGACTAGTCGTGGGGGAACTCCCGTAGATCCTCCTATGGATGTATTTGTTCACCAAAGCAAGCTGCACATGGAGGGCTTTCGCAGCCTGCGGGAGGGAGAGCCACTAGAGTTTACTTTCCAGATGTCCCCCAGGGGCCTGGAGTCTGTACAAGTCACGGGCCTCGGGGGAGGCCCCTGCTTGggcagtgagaggagacagaaaCCCAAGCCCCCAGCCCCGCAGCAGAGATGGAAGCCAAAAGGAGACCGatGCTATAACTGTGGAGGACTAGACCACCATGCCAAAGAGTGTAGCCTGCCGCCCCAGCCAAAGAAGTGCCACTACTGCCAGAGCGCGACGCACATGGTGGCCCACTGTCCTCACCGCCCCCCCGGCCCCTTGTCTCCCGGCCCTGCCACAGCCACTCAGGGAAGACGCACTACTGTGGACCAGTACCCCTCTACCTTCACCACCACCTCCTACAGCCCCAGTCCCAGGCAGGGAAACAGGCACTCCCAGCCCTCTCAGGACAGTTCCTCCCCCCTCAGCAAGTCTTCCAGCTCTCCGGAAGACCCGGCACAGATTCAGAGGAGATCTGGAGGACACCACAGGTTGAAACAATCCTGAAGCACATCCACCTTGGACGGATGCCACCTGTTAGTATTACCTCTGGTCCAATAAAACCACCTTCCTTCAGTCTGATCAGTCTCCTCCTCACACAGACTCATCCTGAGCTACATCCTGAGCAACCTCAAGCAGATCCACATGTCTAACCAAATGGACAGTAAAGTATCTATTTTACTTCCCCAATCCCTCCCAGACTCTCCCTCTACTAAACTGTGTACATCTTAGCTACCTCCTGGGCCAACTCAAACCATCTCCACATAGATAGACCTATACTCTTAGCTACCTCCTGGGCCAACTCAAACCATCTCCACATAGATAGACCTATACTCTTAGCTACCTCCTGGGCCAAC
>XM_036943349.1
aATAATTTTTTACTTCGTTCATTGACTCATTGGCCTGGTCTGTTTGATCTGTTTCGCAAGCGCTCCCGGTAGTCTCGCGATGTTgcacctctgggtttagaaactctgtggcgAAACTCTTCTGTCTCCAGTCGCTACGCTGAGATGTTAACCTTTGCCAGACCGCTACCTCCATAACTTGATTGAGGGTTTCAGACTCCGGGGACGAGATGGCGTCCATCCCTATTGAATtATATCCAGGGGTATGACCTCGCAGGGGACAACCTCAAGAGGGGTGGGCAAAGGTGGTGATAGAGGAGAGGAGCCAGGATCCTTGCAGGGTGGGCAGCAACAGTCCATGCACGGCGCAGGCCACTGCAAGTGGTTCAATGTGCGGATGGGCTTCGGATTTATATCCATGACTAGTCGTGGGGGAACTCCCGTAGATCCTCCTATGGATGTATTTGTTCACCAAAGCAAGCTGCACATGGAGGGCTTTCGCAGCCTGCGGGAGGGAGAGCCACTAGAGTTTACTTTCCAGATGTCCCCCAGGGGCCTGGAGTCTGTACAAGTCACGGGCCTCGGGGGAGGCCCCTGCTTGggcagtgagaggagacagaaaCCCAAGCCCCCAGCCCCGCAGCAGAGATGGAAGCCAAAAGGAGACCGatGCTATAACTGTGGAGGACTAGACCACCATGCCAAAGAGTGTAGCCTGCCGCCCCAGCCAAAGAAGTGCCACTACTGCCAGAGCGCGACGCACATGGTGGCCCACTGTCCTCACCGCCCCCCCGGCCCCTTGTCTCCCGGCCCTGCCACAGCCACTCAGGGAAGACGCACTACTGTGGACCAGTACCCCTCTACCTTCACCACCACCTCCTACAGCCCCAGTCCCAGGCAGGGAAACAGGCACTCCCAGCCCTCTCAGGACAGTTCCTCCCCCCTCAGCAAGTCTTCCAGCTCTCCGGAAGACCCGGCACAGATTCAGAGGAGATCTGGAGGACACCACAGGTTGAAACAATCCTGAAGCACATCCACCTTGGACGGATGCCACCTGTTAGTATTACCTCTGGTCCAATAAAACCACCTTCCTTCAGTCTGATCAGTCTCCTCCTCACACAGACTCATCCTGAGCTACATCCTGAGCAACCTCAAGCAGATCCACATGTCTAACCAAATGGACAGTAAAGTATCTATTTTACTTCCCCAATCCCTCCCAGACTCTCCCTCTACTAAACTGTGTACATCTTAGCTACCTCCTGGGCCAACTCAAACCATCTCCACATAGATAGACCTATACTCTTAGCTACCTCCTGGGCCAACTCAAACCATCTCCACATAGATAGACCTATACTCTTAGCTACCTCCTGGGCCAAC

Function

NR:

description
protein lin-28 homolog A-like isoform X1

GO: NA

KEGG:

id description
K18754 LIN28; protein lin-28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943353.1 False 1482 mRNA 0.52 4 24584393 24595385
XM_036943349.1 True 1356 mRNA 0.54 5 24584393 24601385

Neighbor

gene id symbol gene type direction distance location
LOC110538887 LOC106605647 coding downstream 43495 24531424 ~ 24540898 (-)
LOC100301652 LOC100301652 coding downstream 79800 24503806 ~ 24504593 (-)
LOC110538859 LOC106578507 coding downstream 91911 24480265 ~ 24492482 (-)
LOC110538767 LOC106605667 coding downstream 331292 24249862 ~ 24253101 (-)
LOC110538717 LOC106578554 coding downstream 400221 24178523 ~ 24184172 (-)
LOC110538828 grik2 coding upstream 261521 24862906 ~ 25110583 (-)
LOC110533704 cep162 coding upstream 816055 25417440 ~ 25427699 (-)
LOC110539072 cep162 coding upstream 827598 25428983 ~ 25443516 (-)
si:ch211-198c19.1 LOC106605502 coding upstream 858169 25459554 ~ 25460882 (-)
LOC110539098 LOC106605503 coding upstream 1067641 25669026 ~ 25790259 (-)
G125192 LOC106605651 non-coding downstream 13703 24569913 ~ 24570690 (-)
G125126 NA non-coding downstream 112038 24472013 ~ 24472355 (-)
G125123 NA non-coding downstream 114409 24469753 ~ 24469984 (-)
G125083 NA non-coding downstream 163489 24394855 ~ 24420904 (-)
G125101 NA non-coding downstream 174589 24404413 ~ 24409804 (-)
G125220 NA non-coding upstream 21018 24622403 ~ 24622633 (-)
G125230 NA non-coding upstream 32381 24633766 ~ 24685283 (-)
G125244 NA non-coding upstream 47178 24648563 ~ 24650144 (-)
G125273 NA non-coding upstream 106089 24707474 ~ 24707709 (-)
G125325 NA non-coding upstream 212259 24813644 ~ 24834540 (-)
G125043 NA other downstream 259557 24324580 ~ 24324836 (-)
G125003 NA other downstream 314257 24269226 ~ 24270136 (-)
LOC110538705 LOC106577653 other downstream 422950 24144519 ~ 24172836 (-)
G124840 NA other downstream 679716 23903839 ~ 23904677 (-)
G125305 NA other upstream 173835 24775220 ~ 24776627 (-)
G127083 NA other upstream 1960229 26561614 ~ 26562127 (-)
LOC110539285 LOC106579350 other upstream 2049991 26641958 ~ 26675649 (-)
LOC110485245 ubr5 other upstream 2669875 27231538 ~ 27278158 (-)
G129250 NA other upstream 3164772 27766157 ~ 27766532 (-)

Expression


Co-expression Network