LOC110538989


Basic Information

Item Value
gene id LOC110538989
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24685282 ~ 24723373 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475853.2
GCGCAGATgtttccatctcttcctctccagaAGCCACCCGATTGAGACAGTCTCTGGGGCTATCTTGACATTGGTTTCAGGGTAGCCAGTGAAGCTGTTTCTGGATGGGTGCAGCCGGGAGAAGAGGATTctgtgagTatacaggagaggaggatgaggggcaAGGCAAGAAGATTGgtggaggagggaaaggaggtGAGATGGACGGAAGAGTGAAGAGAGGTGGAAGGGTACAGAATGGTCCATGTATATTTGACCTGATACAATAAGCGCTGTGTTCGGTGCACTTCTGTGCCAGTCCATTTGGAGGAGAACATCGCCTCTACCGCCCTCCTCCAGCTCCCTGATTGAGAGAATGGACTGCGACAACACGGTGATCAGCTGAATATCAATCGATGATCTATAGACGACACAGGAGCAGCACAGCCAGACTGCTCTCTCACTAACACCACTGCTTCATGGCCCCAGAGGAGCACACTGCTTTCTACCACCACATCTTCCATCCCTCAAGAGGACCAGgccctaatgaaacattctactGTAACAAGCTCATTAGAACATCTCTGGGTTGGCAGAACTGCAGTTTCATCTGAGGGAAGTCACTTGGGTTTCTAACTACCTTGGAGATCTGCGTTTCCCGGACACCACTCATATCCCAGATAGCGTGGGAACCCAATAAAGCTACCATCGCCTGTCTGCACTGAGCCTAAGGGAGACCCCTTGTCCTTTCCCCTCAACTATCAATCAACATCCATCAACCTCCTGAACTTAAACCGAATGACGAAATGGAATTTCTCCGGCGGCGCGGGACGACCTGGTGGATCCATAGGGGGTTCTCCTGGAGATGCCTTATCAGCCATCAGCCAGCGACTTCATTCATTTCTAACGGTGTTCACCCATGTTACGATTtatagatggttgtccttgtaCAAAGCCTGGTGTGTAACCTCTGAGCTGCGTGTTGAAGCAGCATGTTTGATTCGTCTCATTCAGTCGTTGACCCTGTCTTTTACTATCTGTTGTCCCCAGTGCATTAGGATATTAACAATACGAGGGGTCGCTCTAAGCCTAAGGAGTAGAGATCAATATCTATATTCAAGGTTATCATTAGGCATACAAAGATTGAATTAGTTTAGAACAACCGAACATTGCTTTAATTGCGTGAAGATAATTTGTGATTAGGCGTGAGAAAAAAATGCCCTCCAGCCTCGGATGTGTTATAGACCTGGAAGGACATCATTTATTGCTTTCATACACATGTTCCAGCCATCAGATGGATTCCCAGACATTCTTAGCTGGTTCTCATGTAGCCCATCTGTCCACTCCCTGGAGTCAGGCAACACAGGAGCCCCGGCGACATTTGGAGTGAAATGAGAGTAGGCCTTAAATGTCAAGTAAAAAAGGCTTGAGATAGCTTTGACACTAAACGTGTCAAACAgacccacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475853.2 True 1476 mRNA 0.48 6 24685282 24723373

Neighbor

gene id symbol gene type direction distance location
LOC118936392 NA coding upstream 832 24622269 ~ 24684450 (+)
LOC110534541 hace1 coding upstream 63865 24605074 ~ 24621417 (+)
LOC110538967 LOC106605650 coding upstream 107166 24571084 ~ 24578116 (+)
LOC110538956 LOC106605651 coding upstream 114541 24568487 ~ 24570741 (+)
LOC110538932 stx12 coding upstream 128319 24548395 ~ 24556963 (+)
ascc3 ascc3 coding downstream 427643 25151016 ~ 25291524 (+)
LOC110534548 LOC106579462 coding downstream 571270 25294643 ~ 25325656 (+)
LOC110534557 LOC106605501 coding downstream 653848 25377221 ~ 25396334 (+)
LOC110539045 mrap2 coding downstream 680060 25403433 ~ 25414375 (+)
tsnare1 LOC106605505 coding downstream 1108030 25831403 ~ 25974877 (+)
G124280 NA non-coding upstream 118982 24502954 ~ 24566300 (+)
G124272 NA non-coding upstream 171538 24493902 ~ 24513744 (+)
G124270 NA non-coding upstream 192822 24480265 ~ 24492460 (+)
G124268 NA non-coding upstream 211719 24473274 ~ 24473563 (+)
G124437 NA non-coding downstream 120843 24844216 ~ 24844538 (+)
G124440 NA non-coding downstream 132264 24855637 ~ 24856057 (+)
G124454 NA non-coding downstream 156159 24879532 ~ 24901068 (+)
G124459 NA non-coding downstream 162257 24885630 ~ 24891536 (+)
G124579 NA non-coding downstream 392715 25116088 ~ 25116385 (+)
LOC110538915 LOC106605649 other upstream 141056 24540963 ~ 24544247 (+)
G124121 LOC106605585 other upstream 536689 24146861 ~ 24148593 (+)
LOC110538497 LOC106605627 other upstream 803646 23861576 ~ 23881639 (+)
G123980 NA other upstream 859780 23824693 ~ 23825502 (+)
G122459 LOC106578191 other upstream 1874019 22810767 ~ 22811263 (+)
G124451 LOC106578403 other downstream 149678 24873051 ~ 24873834 (+)
G125934 NA other downstream 959507 25682880 ~ 25757853 (+)
G126387 LOC105417071 other downstream 1326477 26049850 ~ 26050104 (+)
G126727 LOC106581475 other downstream 1903476 26626849 ~ 26628649 (+)

Expression


Co-expression Network