LOC110538828 (grik2)


Basic Information

Item Value
gene id LOC110538828
gene name grik2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24862906 ~ 25110583 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943381.1
GCAGTGTGTTTTTTCGACCAACAGGAGGCGTGTCTTCCCCACGGCCGGAGCGGAGCGCAGCAAGACGCGAGTCTGAAGGAACCGATCTGGCTCGTCTCTCTATCGGAACAAATCAACTACTTTCTCAGCTCATTCTATTCGAAGACCGCCCGTGAATGGATTTCTCCCGGATTTGCCCAGACTAACATGGATGCCCCACCGTTAGCTGAGTGGGAAGGTTGTTTCTTGGCGCAGTGAGCTGGACACGCAGCGCTTGCTAATGGATCTGGGGAAACGACTGATACCTTCTCCCTGACTGACCATGCCGTGATCTTGCGCGTGGGCCGTCACCCTGCTTAACGTCAAAAGAAACATTTCGGGGGAATCTACCGATCCAGGGAATAAATACTGTGGCATCACACAGACACCATGAAGATTACCTCCCCGCTCATAAGTAAAGCGAGATTCAGGTGCACCGTCAGGcttctactgctgctattactatgtGTGGGATATTCTCGCGGGATGCCACACGTTTTAAGATTTGGAGGAATATTTGAGTCCATTGAGTCGGGGCCGTCAGGTGCTGAGGAACTAGCCTTTAAATTTGCTTTAAATACAATCAACAGGAACAGAACCCTACTGCCAAACACAACGCTAACATACGACATCCAACGGATAAACATATACGACAGCTTCGAAGCCTCCAGAAAAGcctgcGACCAACTATCTCTGGGGGTGGCGGCCATCTTCGGGCCCTCCCACAGCTCGTCGGCCAATGCGGTCCAGTCCATCTGTAACGCGCTTGGCGTGCCCCACATCCAGACCAAATGGAAGCACCAGGTGTCTGACAACAGGGACTCCTTCTACGTCAGCCTCTACCCAGACTTCTCCTCTCTCAGCCGAGCCATTCTGGACCTGGTTCACTTCTTCAAGTGGAAGACGGTCACCGTTGTCTATGATGACAGCACAGGTCTTATTCGGTTACAGGAGCTCATAAAGGCTCCATCTCGCTACAACATCCGCTTGAAGATCCGCCAGTTGCCAGCGGACACCAAGGACTCCAAGCCTCTCCTcaaggagatgaagagagggaaggagttcCACGTCATCTTCGACTGTGGACACGAAATGGCTGCCGGCATCCTAAAACAGgctctTGCTATGGGGATGATGACAGAGTACTATCACTACATCTTCACCACACTGGACCTGTTTGCGCTGGACGTGGAGGCCTACCGTTACAGTGGGGTGAACATGACTGGCTTTAGGATCCTGAATACGGAGAACAGccaagtggcctccatcatagAGAAGTGGTCCATGGAACGCCTGCAGGCCCCGCCCAAACCTGACTCTGGCCTACTGGACGGCTTCATGACGACGGACGCTGCGCTCATGTACGATGCCGTGCACGTGGTGGCCGTGGCCGTGCAGCAGTCTCAGCAGATCACTGTCAGCTCCCTACAGTGCAACAGACACAAACCCTGGCGCTTTGGGAACAGATTCATGGCCCTCATCAAAGATgCCCACTGGGATGGCTTGACTGGGCGGATCACTTTCAACAGAACCAATGGCTTGAGGACAGACTTTGACCTGGATGTGATTAGTCTGAAGGAGGACGGACTGGAGAAGATTGGAACATGGGACCCTCCTAGTGGCTTGAACATGACAGACCACCAGAAGGGGAAGACATCCAATGTCACAGACTCCTTAGCCAACAGATCTCTAGTTGTCTCCACCATACTGGTGGAGCCCTATGTGATGTTCAAGAAGTCAGACAAGCCCCTTTACGGTAACGACCGCTTTGAGGGTTACTGTATCGACCTGCTGAGGGAGCTGGCTAGCATCCTGGGGTTCACCTACGAGTTGCGTCTGGTGGAGGACGGCCGCTACGGGGCCCAGGACGAGACCACGGGCCAGTGGAACGGCATGGTCAAGGAGCTGATTGACCACAAAGCTGATCTGGCTGTGGCTCCCCTGGCCATCACCTACGTGAGGGAGAAGGTCATCGACTTCTCCAAGCCCTTCATGACACTGGGGATAAGTATCCTCTACCGCAAGCCCAACGGAACCAACCCTGGGGTCTTCTCCTTTCTCAACCCCCTCTCACCTGATATCTGGATGTATATTCTGCTGGCTTACTTGGGTGTCAGTTGTGTGCTGTTTGTCATAGCCAGGTTTAGTCCCTACGAGTGGTATAACCCCCACCCCTGCAACCCCGACTCAGATGTAGTGGAAAACAATTTCACCCTGCTAAATAGTTTCTGGTTCGGAGTTGGAGCTCTCATGCAGCAAGGCTCTGAGTTAATGCCCAAAGCCCTGTCCACCAGGATCGTAGGAGGCATCTGGTGGTTCTTCACCCTGATAATCATCTCCTCCTACACGGCCAACCTGGCTGCCTTCCTCACTGTGGAGAGGATGGAGTCGCCCATCGACTCAGCTGACGATCTTGCCAAGCAGACCAGGATAGAGTATGGAGTGGTAGAGGAGGGATCCACCATGACCTTCTTCAAGAAAACCAAGATCTCCACATACGACAAGATGTGGGAGTTTATGAGCAGTCGGAGGCACTCTGTGATGGTGAAGGATATTGACGAAGGGATCCACCGAGTTCTCACCTCGGACTACGCCTTCCTCATGGAGTCCACCACCATCGAGTTTGTCACCCAGCGCAACTGCAACCTTACGCAGATAGGGGGTCTCATCGACTCCAAAGCCTACGGTGTGGGAACCCCCATGGGCTCTCCGTACAGAGACAAGATCACCATAGCGATCCTGCAGCTGCAGGAAGAAGGAAAGCTGCACATGATGAAGGAGAAGTGGTGGAGGGGGAACGGTTGTCCGGAGGATGAGAAGAATAAGGAGGCCAGCGCTCTGGGGGTCCAGAACATCGGGGGCATCTTTATCGTCCTGGCGGCTGGACTCGTCCTGTCGGTGTTCGTGGCAGTCGGAGAGTTCATCTATAAATCCAAACAAAACGCACAACTGGAAAAGagGTCCTTCTGCAGTGCCATAGTGGACGAATTGCGGGTGTCCCTCAAGTGCCAGCGGCGCCTCAAACACAAGCCTCAGCCGCCCGTCATGGTCAAGACAGAGGACGTCATCAACATGCACACCTTCAACGACCGCAGACTGCCAGGCAAAGAGACCATGGCCTAGAACaggactccctctctccctctctccctctccctctctctctccctctccctctctctctctctctctctctctcgctctcgctctgctGTCACTGGGAGGCGTGTAGGGTGAAGAGACactgggggagggaggaagggtgataGTTGATTTATGTAAGTGTATGGGGGGgtaagagagatgggagaagagaagagaggagctgAGCTGCTCTGATCACTGACTGTCTGGCATCTTTGTTTCGAAACACTAAGCTAGAAATGAAAAGAGATTCAACAATGTTTCCTGTGGAAATAACTTGAACCAACCTGGGAGCAATTCAATGTGAGTTACCTCATTACTCTACCTGGCAATGCACCTGAGCAAGGAGTGACCAAGTGGTGCCATGATTTAGTAtcaaaaaaagagagagataaaccCAGGAttcagaggaaaggagggagggcagGTTAAATTGAAAGTATAGAATATCATACAGCTACTGTATATGTTTGGTTGTCCCTTAGAAATCACAGGTCCAAATTGAATCAATATTTATCTGCTAcccaaccactctctctctcactgagtaGAATCAGGAGAACGTACATCACTCAGTCATAGCTATGGAGCAAACACATACACAGATACTAATAGACAAAACTGAGAGAAAATCAGTTGGCGAGTGTGTAAAGGACACATCTTGTTATTATTCAACCATAGAAGAAGAAGGAGACCAGATGGGCTAGAAACAGCCAGTTCCAAATGAAACCCAAAGCCCAAAACGCATTGGTGAGCAGGACAGGACTGCTCCCAACATGTACAGAGGCATCGTTTATTCATATGATTCACTGTTGGAAagaatacagtacattatccATCGGGCAATaggttatttcatttattttgtttTCAGAGTACTAAACATTTTGTTGAATTATGGTGGATGGGAAAAACATTTTgaataaaaacatatatacatatataaatacaAGCAGAGACTGATGACCGGGGGAGGGGCAGTGATGTAATAGAGGAATTAGGTGATAGGAACTGGAAGTGACATGAGTGGCGGACATGATGAAAGTACTAACCTTAGAAACCTTAGTCGTTTGAATTGAAGGAAAGCAGGACAGCAGTAGTGGATCTGAAACTAAATTCACAGCAATCACACAACATGAGGAATTTATTTATTCAAgtatttatttctttatttatatTTTCATTGACTGGATTTTCACAGCAGCTGCAAGGATACAGTACACACCTCATTTTCAGATTTGATGGGTACAAATGTTttggttttgttttttgttcaatGTCAAGTCTCAAGTTTCTTTTTGTACTCTAGTGGCATTTATTTTAATAACAAAATCCTCACATTTACTTGTGCAAATGCAATTTCTATGAAAAAGTGTTTTTGTAcgaagaaaataaaacattttgtaataatttttatcaacaaaaaaaatgtaccaCGGGTGTCACCACGGCAGACAGCGTGACTCTCTCTCCACTGCGGGCCGTGTGGGTGTCCCAAGGGATAGCAGCCCCATCTAGGATAGCCCCGTCAGGCCTAACACAACCCCCTCCAGGGGGTCACGAGAACAACCCCTCCATGGACTGGCATCACACCGATGGGGTCTCCAGAGCATTCTGGTTGAGCTTCAGTGGCATAATACATGTTTTGGAAAAAACTATTTTTATCATGTAAAGGAATCCTATTTAAAATAAAGATATTTTTACTTCAGGTGAAAAGAGTAATGATTAAACAATAATTAGaacaataaatatatatatacacacacaaagaagTTGAAGTGAAGAGGACTGCCAACGATGCTTATCATTCTACACCCCTGACTTCCAATAGACTGCTAGATTTCAGTGCTGAGAAATTGTGTGTAAATGGTTTTAAAAACAGAGAAATATGTATTTAACAGAATAAGGAACACCTAACTAATTTTGAACATGTTATGAAAACTAAACGGAGTGCACACAGTTTACTGTTTGAAGTTGATGCACAAgtttaaagaaaataaaaaaaaatattcacatC
>XM_036943390.1
GTCGTTGTGCAGGTCCCCTGTTGCTTTAAGCAGTGTGTTTTTTCGACCAACAGGAGGCGTGTCTTCCCCACGGCCGGAGCGGAGCGCAGCAAGACGCGAGTCTGAAGGAACCGATCTGGCTCGTCTCTCTATCGGAACAAATCAACTACTTTCTCAGCTCATTCTATTCGAAGACCGCCCGTGAATGGATTTCTCCCGGATTTGCCCAGACTAACATGGATGCCCCACCGTTAGCTGAGTGGGAAGGTTGTTTCTTGGCGCAGTGAGCTGGACACGCAGCGCTTGCTAATGGATCTGGGGAAACGACTGATACCTTCTCCCTGACTGACCATGCCGTGATCTTGCGCGTGGGCCGTCACCCTGCTTAACGTCAAAAGAAACATTTCGGGGGAATCTACCGATCCAGGGAATAAATACTGTGGCATCACACAGACACCATGAAGATTACCTCCCCGCTCATAAGTAAAGCGAGATTCAGGTGCACCGTCAGGcttctactgctgctattactatgtGTGGGATATTCTCGCGGGATGCCACACGTTTTAAGATTTGGAGGAATATTTGAGTCCATTGAGTCGGGGCCGTCAGGTGCTGAGGAACTAGCCTTTAAATTTGCTTTAAATACAATCAACAGGAACAGAACCCTACTGCCAAACACAACGCTAACATACGACATCCAACGGATAAACATATACGACAGCTTCGAAGCCTCCAGAAAAGcctgcGACCAACTATCTCTGGGGGTGGCGGCCATCTTCGGGCCCTCCCACAGCTCGTCGGCCAATGCGGTCCAGTCCATCTGTAACGCGCTTGGCGTGCCCCACATCCAGACCAAATGGAAGCACCAGGTGTCTGACAACAGGGACTCCTTCTACGTCAGCCTCTACCCAGACTTCTCCTCTCTCAGCCGAGCCATTCTGGACCTGGTTCACTTCTTCAAGTGGAAGACGGTCACCGTTGTCTATGATGACAGCACAGGTCTTATTCGGTTACAGGAGCTCATAAAGGCTCCATCTCGCTACAACATCCGCTTGAAGATCCGCCAGTTGCCAGCGGACACCAAGGACTCCAAGCCTCTCCTcaaggagatgaagagagggaaggagttcCACGTCATCTTCGACTGTGGACACGAAATGGCTGCCGGCATCCTAAAACAGgctctTGCTATGGGGATGATGACAGAGTACTATCACTACATCTTCACCACACTGGACCTGTTTGCGCTGGACGTGGAGGCCTACCGTTACAGTGGGGTGAACATGACTGGCTTTAGGATCCTGAATACGGAGAACAGccaagtggcctccatcatagAGAAGTGGTCCATGGAACGCCTGCAGGCCCCGCCCAAACCTGACTCTGGCCTACTGGACGGCTTCATGACGACGGACGCTGCGCTCATGTACGATGCCGTGCACGTGGTGGCCGTGGCCGTGCAGCAGTCTCAGCAGATCACTGTCAGCTCCCTACAGTGCAACAGACACAAACCCTGGCGCTTTGGGAACAGATTCATGGCCCTCATCAAAGATgCCCACTGGGATGGCTTGACTGGGCGGATCACTTTCAACAGAACCAATGGCTTGAGGACAGACTTTGACCTGGATGTGATTAGTCTGAAGGAGGACGGACTGGAGAAGATTGGAACATGGGACCCTCCTAGTGGCTTGAACATGACAGACCACCAGAAGGGGAAGACATCCAATGTCACAGACTCCTTAGCCAACAGATCTCTAGTTGTCTCCACCATACTGGTGGAGCCCTATGTGATGTTCAAGAAGTCAGACAAGCCCCTTTACGGTAACGACCGCTTTGAGGGTTACTGTATCGACCTGCTGAGGGAGCTGGCTAGCATCCTGGGGTTCACCTACGAGTTGCGTCTGGTGGAGGACGGCCGCTACGGGGCCCAGGACGAGACCACGGGCCAGTGGAACGGCATGGTCAAGGAGCTGATTGACCACAAAGCTGATCTGGCTGTGGCTCCCCTGGCCATCACCTACGTGAGGGAGAAGGTCATCGACTTCTCCAAGCCCTTCATGACACTGGGGATAAGTATCCTCTACCGCAAGCCCAACGGAACCAACCCTGGGGTCTTCTCCTTTCTCAACCCCCTCTCACCTGATATCTGGATGTATATTCTGCTGGCTTACTTGGGTGTCAGTTGTGTGCTGTTTGTCATAGCCAGGTTTAGTCCCTACGAGTGGTATAACCCCCACCCCTGCAACCCCGACTCAGATGTAGTGGAAAACAATTTCACCCTGCTAAATAGTTTCTGGTTCGGAGTTGGAGCTCTCATGCAGCAAGGCTCTGAGTTAATGCCCAAAGCCCTGTCCACCAGGATCGTAGGAGGCATCTGGTGGTTCTTCACCCTGATAATCATCTCCTCCTACACGGCCAACCTGGCTGCCTTCCTCACTGTGGAGAGGATGGAGTCGCCCATCGACTCAGCTGACGATCTTGCCAAGCAGACCAGGATAGAGTATGGAGTGGTAGAGGAGGGATCCACCATGACCTTCTTCAAGAAAACCAAGATCTCCACATACGACAAGATGTGGGAGTTTATGAGCAGTCGGAGGCACTCTGTGATGGTGAAGGATATTGACGAAGGGATCCACCGAGTTCTCACCTCGGACTACGCCTTCCTCATGGAGTCCACCACCATCGAGTTTGTCACCCAGCGCAACTGCAACCTTACGCAGATAGGGGGTCTCATCGACTCCAAAGCCTACGGTGTGGGAACCCCCATGGGCTCTCCGTACAGAGACAAGATCACCATAGCGATCCTGCAGCTGCAGGAAGAAGGAAAGCTGCACATGATGAAGGAGAAGTGGTGGAGGGGGAACGGTTGTCCGGAGGATGAGAAGAATAAGGAGGCCAGCGCTCTGGGGGTCCAGAACATCGGGGGCATCTTTATCGTCCTGGCGGCTGGACTCGTCCTGTCGGTGTTCGTGGCAGTCGGAGAGTTCATCTATAAATCCAAACAAAACGCACAACTGGAAAAGCCCCAACGCCACCAAGGTGATAGGAAGCGTGAGGAGTTCTGCTGTCACCACGGACCCTCCAAGCAGCTACCTGTAGACTTTAACCACCAGCTCAAATGACCTCCAGAaagactccagagactccagtcaTCTACATTTACCTTACAATGCACAAATTGTACTTTTTTAACTTCAGATATTTCCCGATTGGGAAGTTTCCTGTCGGAAGAACTGGCAGCAATGTTATGGTCACAACGTTTCAATGAAAAGTTGCCATTGGTGCATGGTTGGGTGTATGTTTTTGAAAGGCGGCCCTAAAACTATAGGTGCAGGGTTTCACACGATGGGATTGGAAGGTTGGCCCAAATGCATGATCCATAATGCTGAAGTAGATGTCTTCATgtcaccctcagcacacagccacAGCAATCCTCTCCCAAAAAACAAATTGTTATTATCAGATACAAACTTTTGGACAGACAAGCCAAACTGAATCAAGCTATAATTGCAAACTCTGAAGGCTTGGTTTTGGAAACACATGCAAGCTTTCAGATATTATAACATACTAACTACTCTACTGAATAATCTCATATTGAAAGTGTAATGCTACAACAACACATCACTCGTTGTCAACAGCATGTAAACCTTTTGATGTTCCCCTTAATCCCATGTCCTGTCCTTCTTGTCCTGAtctgtccttcctctccggtCCTTTCTGTCCATCCTGGGATTCCTGTCCTGTCCTTCCTGCCCTGTCCTTCCTGCCCTTCCTGTCCTGTCCTTCATGTCCTGTCCTTCCTGCCCTGTCc

Function

symbol description
grik2 Is expressed in Bergmann glial cell; cerebellum; granule cell; hindbrain; and optic tectum. Human ortholog(s) of this gene implicated in Huntington's disease and autosomal recessive non-syndromic intellectual disability. Orthologous to human GRIK2 (glutamate ionotropic receptor kainate type subunit 2).

NR:

description
PREDICTED: glutamate receptor ionotropic, kainate 2 isoform X2

GO: NA

KEGG:

id description
K05202 GRIK2; glutamate receptor, ionotropic kainate 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943381.1 False 5179 mRNA 0.48 17 24862906 25110554
XM_036943390.1 True 3793 mRNA 0.52 17 24871731 25110583

Neighbor

gene id symbol gene type direction distance location
LOC110538978 LOC106605653 coding downstream 261521 24584393 ~ 24601385 (-)
LOC110538887 LOC106605647 coding downstream 322008 24531424 ~ 24540898 (-)
LOC100301652 LOC100301652 coding downstream 358313 24503806 ~ 24504593 (-)
LOC110538859 LOC106578507 coding downstream 370424 24480265 ~ 24492482 (-)
LOC110538767 LOC106605667 coding downstream 609805 24249862 ~ 24253101 (-)
LOC110533704 cep162 coding upstream 306857 25417440 ~ 25427699 (-)
LOC110539072 cep162 coding upstream 318400 25428983 ~ 25443516 (-)
si:ch211-198c19.1 LOC106605502 coding upstream 348971 25459554 ~ 25460882 (-)
LOC110539098 LOC106605503 coding upstream 558443 25669026 ~ 25790259 (-)
LOC110539162 LOC106605511 coding upstream 1440249 26550832 ~ 26559134 (-)
G125347 NA non-coding downstream 6839 24855642 ~ 24856067 (-)
G125325 NA non-coding downstream 28366 24813644 ~ 24834540 (-)
G125273 NA non-coding downstream 155197 24707474 ~ 24707709 (-)
G125230 NA non-coding downstream 177623 24633766 ~ 24685283 (-)
G125244 NA non-coding downstream 212762 24648563 ~ 24650144 (-)
G125598 NA non-coding upstream 179135 25289718 ~ 25291323 (-)
G125643 NA non-coding upstream 244374 25354957 ~ 25355276 (-)
G125644 NA non-coding upstream 245783 25356366 ~ 25356581 (-)
G125672 NA non-coding upstream 308564 25419147 ~ 25419450 (-)
G125305 NA other downstream 86279 24775220 ~ 24776627 (-)
G125043 NA other downstream 538070 24324580 ~ 24324836 (-)
G125003 NA other downstream 592770 24269226 ~ 24270136 (-)
LOC110538705 LOC106577653 other downstream 701463 24144519 ~ 24172836 (-)
G127083 NA other upstream 1451031 26561614 ~ 26562127 (-)
LOC110539285 LOC106579350 other upstream 1540793 26641958 ~ 26675649 (-)
LOC110485245 ubr5 other upstream 2160677 27231538 ~ 27278158 (-)
G129250 NA other upstream 2655574 27766157 ~ 27766532 (-)
LOC110485663 LOC106579570 other upstream 2986099 27933389 ~ 28149986 (-)

Expression


Co-expression Network