LOC110539072 (cep162)


Basic Information

Item Value
gene id LOC110539072
gene name cep162
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25428983 ~ 25443516 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943476.1
TTATAACATCACTAGCTAGTATCTCAAATGATTGTAATTTACCTGGCTTGAAAATACGTTTGTGGTGATGTTGTGGTTTCACTTGACACTTGCTAACTATTGCGAGCAAGTAGTTAGTAGAAGAAGAGGTGAATTAAGCTGATATATTGAGCAGCCCCCTCTGTTGGCCTAAACAAGCACAACGCGATTGAGACGTCAACCCGTAGGCTCTGATGCCCGGACTTTCTTGCCAATCTGTCTCAGATGACTCGGTGGATTTGGGTGGAAGTGCTAAGCGCTCCAGTGTTCTGGACAGCCTGGACAGAGCCTCTCAGAAACCACCACCAAAGAAGACATCAGCTGTCCCTGTgccgtggaggaggaggacagcgAAGAGACACCTGGCAGAGCAGAGGCTGCCAAACGCAGGTTCACTAAACCCAAAAAGCCCCAGCAGCAGGCTGTGGTGAAAACTCAGGAGGATGAGAGTGAGAGCAGCCCAATGAAAAGCACCCCTCAGGGTATAGGAATCACTACTGTAACCCCTAGTTCCTTAGGGCCACCCAATGGCACATTGTCTCCCCATCATTGGCGATTGCTGAGATCTGAGAAGATGTTCCGTAAGTCTCTGAGAAGATCCCAGCCTAtccaggagggggaagaggagctgCAGCATCAGGGAGTCGAGGGGGgttcagaggaggaggaggagggggcagagcCTGTCATCTTCAGCAGAGACAGTCTGGAGCCTGAGGGTGTCTGCTCTGACTCTGTGATGGCATCCGGACCAGGTCAGAACGCTGCAGTGGGTCTTAGTCTGGGCATGGACAgcctggaggaggaagaggagaaggccCGCTTCTTTGCCCACCTGGAGGGAGGTGTGTCCTCCACCATAGACTACTCCAGACTCAACATAGATCTGGATTCCACCAGCGCCTCCACCACAGCTACCACCCTCAGGAAGGCAGAGGCGGCTGTGGCTGGTGTCgatcagagagaggaggagaaagctATGGAGTCTGACAGACTCTCCCCAGCCTCCAACCACTACAGCGAGGATGAGCACTTTGAAGATGAGGTCATTGAGGAGCTGAGAAATTGGaaGCCTAAAAGGCCTGCCATGCTCACCAAAGTCCAGACTGTGGTGGTCTGAGTGTGAGCAGCGAGCTGGTGGCAGTGGTTCAGTCCTTCGCTGCCTTCCTCCAGCAGCAACATCAGATGAAGATGAGAGGTCACCAGGATACCAGTCACACTGTCTCCTGGGAAACCAAAGGTCAACAGGAAGCCAGCCAGACTCAGGAGACTGAGTGTCCATCAGAGAGGAAAGTAAGTCAACATACTGGAGTAGTTTTTCAGTCTGTGATGCAACAAGTTCGTTCATCAGTGTGCTGCAATTTCTTTTCAGATAAGTATGACGTTTTTCTCCATTCACCTGGTCATATGATAGGGGTGTGACTTTTACTTTGTTGAGTTGTCCAACCCAGCTGATTGCTCCTTGCTCTATCATAAGTCTGATTGGCTGATTTTAGTTTGGATTTTATGTCGTCTCAGCGATGCAAATTAGTCACCTTTCGGCGAAATTTGCCCTTTTGTCCAAAATAAGTGACCTACATGATTCGTGTAGATCCGATGAACGATAACAAAGAGGTCAACTttaggtgagaagcctgaccacggagacgggggtgagaaggtgatgaagcgtactgttacataaatattcatacacatagctcatatattatACAGCGCCAAGCCAAACCGCCTGACTCAAGTCATCTTACGTACCCTTGCTAAAACAGGAACTAGCTCACACAGCCAGCAATAAAACATCCCCCTAACACTATCCCCTCAGCTTGGTTGTCTCCCGACCCCAGgaaacaaagacattccatcgcaagaacacatacacccagccataagactgaccccctctgttctcttctttcacgaccccctctgctctcctgtatCAGATTTCCAGACCCACAAATGTCtccttgtataaacacacatctcatccccCTCTACTGGTTGGGTGCTCAGAACAAgactctgctgtgcaccaatggggcccgctctggctagagcaaggcccgcctccaaccctttgtgaccagtcagaagaccaaaACGACAAgtctccacctact
>XR_005035994.1
TTATAACATCACTAGCTAGTATCTCAAATGATTGTAATTTACCTGGCTTGAAAATACGTTTGTGGTGATGTTGTGGTTTCACTTGACACTTGCTAACTATTGCGAGCAAGTAGTTAGTAGAAGAAGAGGTGAATTAAGCTGATATATTGAGCAGCCCCCTCTGTTGGCCTAAACAAGCACAACGCGATTGAGACGTCAACCCGTAGGCTCTGATGCCCGGACTTTCTTGCCAATCTGTCTCAGATGACTCGGTGGATTTGGGTGGAAGTGCTAAGCGCTCCAGTGTTCTGGACAGCCTGGACAGAGCCTCTCAGAAACCACCACCAAAGAAGACATCAGCTGTCCCTGTgccgtggaggaggaggacagcgAAGAGACACCTGGCAGAGCAGAGGCTGCCAAACGCAGGTTCACTAAACCCAAAAAGCCCCAGCAGCAGGCTGTGGTGAAAACTCAGGAGGATGAGAGTGAGAGCAGCCCAATGAAAAGCACCCCTCAGGGTATAGGAATCACTACTGTAACCCCTAGTTCCTTAGGGCCACCCAATGGCACATTGTCTCCCCATCATTGGCGATTGCTGAGATCTGAGAAGATGTTCCGTAAGTCTCTGAGAAGATCCCAGCCTAtccaggagggggaagaggagctgCAGCATCAGGGAGTCGAGGGGGgttcagaggaggaggaggagggggcagagcCTGTCATCTTCAGCAGAGACAGTCTGGAGCCTGAGGGTGTCTGCTCTGACTCTGTGATGGCATCCGGACCAGGTCAGAACGCTGCAGTGGGTCTTAGTCTGGGCATGGACAgcctggaggaggaagaggagaaggccCGCTTCTTTGCCCACCTGGAGGGAGGTGTGTCCTCCACCATAGACTACTCCAGACTCAACATAGATCTGGATTCCACCAGCGCCTCCACCACAGCTACCACCCTCAGGAAGGCAGAGGCGGCTGTGGCTGGTGTCgatcagagagaggaggagaaagctATGGAGTCTGACAGACTCTCCCCAGCCTCCAACCACTACAGCGAGGATGAGCACTTTGAAGATGAGGTCATTGAGGAGCTGAGAAATTGGaaGCCTAAAAGGCCTGCCATGCTCACCAAAGTCCAGACTGTGGTGGTCTGAGTGTGAGCAGCGAGCTGGTGGCAGTGGTTCAGTCCTTCGCTGCCTTCCTCCAGCAGCAACATCAGATGAAGATGAGAGGTCACCAGGATACCAGTCACACTGTCTCCTGGGAAACCAAAGGTCAACAGGAAGCCAGCCAGACTCAGGAGACTGAGTGTCCATCAGAGAGGAAAATTTCCAGACCCACAAATGTCtccttgtataaacacacatctcatccccCTCTACTGGTTGGGTGCTCAGAACAAgactctgctgtgcaccaatggggcccgctctggctagagcaaggcccgcctccaaccctttgtgaccagtcagaagaccaaaACGACAAgtctccacctact
>XM_021626034.2
TTATAACATCACTAGCTAGTATCTCAAATGATTGTAATTTACCTGGCTTGAAAATACGTTTGTGGTGATGTTGTGGTTTCACTTGACACTTGCTAACTATTGCGAGCAAGTAGTTAGTAGAAGAAGAGGTGAATTAAGCTGATATATTGAGCAGCCCCCTCTGTTGGCCTAAACAAGCACAACGCGATTGAGACGTCAACCCGTAGGCTCTGATGCCCGGACTTTCTTGCCAATCTGTCTCAGATGACTCGGTGGATTTGGGTGGAAGTGCTAAGCGCTCCAGTGTTCTGGACAGCCTGGACAGAGCCTCTCAGAAACCACCACCAAAGAAGACATCAGCTGTCCCTGTgccgtggaggaggaggacagcgAAGAGACACCTGGCAGAGCAGAGGCTGCCAAACGCAGGTTCACTAAACCCAAAAAGCCCCAGCAGCAGGCTGTGGTGAAAACTCAGGAGGATGAGAGTGAGAGCAGCCCAATGAAAAGCACCCCTCAGGGTATAGGAATCACTACTGTAACCCCTAGTTCCTTAGGGCCACCCAATGGCACATTGTCTCCCCATCATTGGCGATTGCTGAGATCTGAGAAGATGTTCCGTAAGTCTCTGAGAAGATCCCAGCCTAtccaggagggggaagaggagctgCAGCATCAGGGAGTCGAGGGGGgttcagaggaggaggaggagggggcagagcCTGTCATCTTCAGCAGAGACAGTCTGGAGCCTGAGGGTGTCTGCTCTGACTCTGTGATGGCATCCGGACCAGGTCAGAACGCTGCAGTGGGTCTTAGTCTGGGCATGGACAgcctggaggaggaagaggagaaggccCGCTTCTTTGCCCACCTGGAGGGAGGTGTGTCCTCCACCATAGACTACTCCAGACTCAACATAGATCTGGATTCCACCAGCGCCTCCACCACAGCTACCACCCTCAGGAAGGCAGAGGCGGCTGTGGCTGGTGTCgatcagagagaggaggagaaagctATGGAGTCTGACAGACTCTCCCCAGCCTCCAACCACTACAGCGAGGATGAGCACTTTGAAGATGAGGTCATTGAGGAGCTGAGAAATTGGaaGCCTAAAAGGCCTGCCATGCTCACCAAAGGTATTACAAACCAATATCCATTTTTCTTTTCTGGGTCAGAGTGGGTTTTTAATTCAGCACGAGTATGTGTTTTCAAGTTGTATTAGCCCTATGTTAAGCCCAAGTTGTATTAGCCCTATGTTAGCCCAAGTTGTATTAGCCCTATGTTAGCCCAAGTTGTATTAGCCCTATGTTAGCCCAAGTTGTATTAGCCCTATGTTAAGCCCAAGTTATATTAGCCCTATGTTAGCCCAAGTTTTATTAGCCCTATGTTAGCCCAAGTTTTATTAGCCCTATGTTAGCCCAAGTTTTATTAGCTCTATGTTTACTTGCAGTTACCTTctcaacaatgcaacaacaataataaaatGGAAGAATACGAACCTAAAGTAAATGACTTAGTAGAGTAGAattaacattttagaataagtataatacaggaaggcacaatattgtacaatatt
>XM_021626051.2
TTATAACATCACTAGCTAGTATCTCAAATGATTGTAATTTACCTGGCTTGAAAATACGTTTGTGGTGATGTTGTGGTTTCACTTGACACTTGCTAACTATTGCGAGCAAGTAGTTAGTAGAAGAAGAGGTGAATTAAGCTGATATATTGAGCAGCCCCCTCTGTTGGCCTAAACAAGCACAACGCGATTGAGACGTCAACCCGTAGGCTCTGATGCCCGGACTTTCTTGCCAATCTGTCTCAGATGACTCGGTGGATTTGGGTGGAAGTGCTAAGCGCTCCAGTGTTCTGGACAGCCTGGACAGAGCCTCTCAGAAACCACCACCAAAGAAGACATCAGCTGTCCCTGTgccgtggaggaggaggacagcgAAGAGACACCTGGCAGAGGATTGCTGAGATCTGAGAAGATGTTCCGTAAGTCTCTGAGAAGATCCCAGCCTAtccaggagggggaagaggagctgCAGCATCAGGGAGTCGAGGGGGgttcagaggaggaggaggagggggcagagcCTGTCATCTTCAGCAGAGACAGTCTGGAGCCTGAGGGTGTCTGCTCTGACTCTGTGATGGCATCCGGACCAGGTCAGAACGCTGCAGTGGGTCTTAGTCTGGGCATGGACAgcctggaggaggaagaggagaaggccCGCTTCTTTGCCCACCTGGAGGGAGGTGTGTCCTCCACCATAGACTACTCCAGACTCAACATAGATCTGGATTCCACCAGCGCCTCCACCACAGCTACCACCCTCAGGAAGGCAGAGGCGGCTGTGGCTGGTGTCgatcagagagaggaggagaaagctATGGAGTCTGACAGACTCTCCCCAGCCTCCAACCACTACAGCGAGGATGAGCACTTTGAAGATGAGGTCATTGAGGAGCTGAGAAATTGGaaGCCTAAAAGGCCTGCCATGCTCACCAAAGGTATTACAAACCAATATCCATTTTTCTTTTCTGGGTCAGAGTGGGTTTTTAATTCAGCACGAGTATGTGTTTTCAAGTTGTATTAGCCCTATGTTAAGCCCAAGTTGTATTAGCCCTATGTTAGCCCAAGTTGTATTAGCCCTATGTTAGCCCAAGTTGTATTAGCCCTATGTTAGCCCAAGTTGTATTAGCCCTATGTTAAGCCCAAGTTATATTAGCCCTATGTTAGCCCAAGTTTTATTAGCCCTATGTTAGCCCAAGTTTTATTAGCCCTATGTTAGCCCAAGTTTTATTAGCTCTATGTTTACTTGCAGTTACCTTctcaacaatgcaacaacaataataaaatGGAAGAATACGAACCTAAAGTAAATGACTTAGTAGAGTAGAattaacattttagaataagtataatacaggaaggcacaatattgtacaatatt
>XM_036943470.1
CAATAGTTTTAGAGAAAACTGCTGTGGAAAACTCAGCCAGAAGCTAGCAAGTGTCAAGTGAATCCATAACATCACCACAAACAAAGAAAGTTACACTCGTTTGAGATACTAGCTAATGATGTTATAATGTAACAATTTATTATATAGATAGATGCTCTGTTTTATAAGGTTTTAAATAGGttatgctagctaacattagctatgtcGACTAAGTTATCTAGCTAGGTTAGCCAGCTACTGTCATGGTAGCTAGGTTAAAAAACGTTCACATGTAAACATGCAGTGGATGggctattttgaaaatatgaTTATAATTAAATGAATGCACAATTAATTATGAGAATATTTATTTGTAGATTACAATTTTAATGGTTTGGCATTATAAGTAGTGTGAAAATATATTTGGACATTTTCATGGATAACATTAGCATAATGTTTTCTgttaagagagaggaggaagactggacaggaagaagagtgaaagagatagaggagaaaAGTCTGTCTCAGATGACTCGGTGGATTTGGGTGGAAGTGCTAAGCGCTCCAGTGTTCTGGACAGCCTGGACAGAGCCTCTCAGAAACCACCACCAAAGAAGACATCAGCTGTCCCTGTgccgtggaggaggaggacagcgAAGAGACACCTGGCAGAGCAGAGGCTGCCAAACGCAGGTTCACTAAACCCAAAAAGCCCCAGCAGCAGGCTGTGGTGAAAACTCAGGAGGATGAGAGTGAGAGCAGCCCAATGAAAAGCACCCCTCAGGGTATAGGAATCACTACTGTAACCCCTAGTTCCTTAGGGCCACCCAATGGCACATTGTCTCCCCATCATTGGCGATTGCTGAGATCTGAGAAGATGTTCCGTAAGTCTCTGAGAAGATCCCAGCCTAtccaggagggggaagaggagctgCAGCATCAGGGAGTCGAGGGGGgttcagaggaggaggaggagggggcagagcCTGTCATCTTCAGCAGAGACAGTCTGGAGCCTGAGGGTGTCTGCTCTGACTCTGTGATGGCATCCGGACCAGGTCAGAACGCTGCAGTGGGTCTTAGTCTGGGCATGGACAgcctggaggaggaagaggagaaggccCGCTTCTTTGCCCACCTGGAGGGAGGTGTGTCCTCCACCATAGACTACTCCAGACTCAACATAGATCTGGATTCCACCAGCGCCTCCACCACAGCTACCACCCTCAGGAAGGCAGAGGCGGCTGTGGCTGGTGTCgatcagagagaggaggagaaagctATGGAGTCTGACAGACTCTCCCCAGCCTCCAACCACTACAGCGAGGATGAGCACTTTGAAGATGAGGTCATTGAGGAGCTGAGAAATTGGaaGCCTAAAAGGCCTGCCATGCTCACCAAAGGTATTACAAACCAATATCCATTTTTCTTTTCTGGGTCAGAGTGGGTTTTTAATTCAGCACGAGTATGTGTTTTCAAGTTGTATTAGCCCTATGTTAAGCCCAAGTTGTATTAGCCCTATGTTAGCCCAAGTTGTATTAGCCCTATGTTAGCCCAAGTTGTATTAGCCCTATGTTAGCCCAAGTTGTATTAGCCCTATGTTAAGCCCAAGTTATATTAGCCCTATGTTAGCCCAAGTTTTATTAGCCCTATGTTAGCCCAAGTTTTATTAGCCCTATGTTAGCCCAAGTTTTATTAGCTCTATGTTTACTTGCAGTTACCTTctcaacaatgcaacaacaataataaaatGGAAGAATACGAACCTAAAGTAAATGACTTAGTAGAGTAGAattaacattttagaataagtataatacaggaaggcacaatattgtacaatatt

Function

symbol description
cep162 Acts upstream of or within cilium assembly and heart looping. Predicted to be located in cytoplasm and microtubule. Predicted to be active in axonemal microtubule; centriole; and centrosome. Is expressed in head. Orthologous to human CEP162 (centrosomal protein 162).

NR:

description
centrosomal protein of 162 kDa-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943476.1 False 2138 mRNA 0.50 9 25428983 25441162
XR_005035994.1 False 1488 mRNA 0.53 10 25428983 25441162
XM_021626034.2 False 1561 mRNA 0.48 8 25434299 25441162
XM_021626051.2 False 1378 mRNA 0.47 7 25434299 25441162
XM_036943470.1 True 1828 mRNA 0.44 8 25434299 25443516

Neighbor

gene id symbol gene type direction distance location
LOC110533704 cep162 coding downstream 1284 25417440 ~ 25427699 (-)
LOC110538828 grik2 coding downstream 318400 24862906 ~ 25110583 (-)
LOC110538978 LOC106605653 coding downstream 827598 24584393 ~ 24601385 (-)
LOC110538887 LOC106605647 coding downstream 888085 24531424 ~ 24540898 (-)
LOC100301652 LOC100301652 coding downstream 924390 24503806 ~ 24504593 (-)
si:ch211-198c19.1 LOC106605502 coding upstream 16038 25459554 ~ 25460882 (-)
LOC110539098 LOC106605503 coding upstream 225510 25669026 ~ 25790259 (-)
LOC110539162 LOC106605511 coding upstream 1107316 26550832 ~ 26559134 (-)
LOC118938772 cg024 coding upstream 1133437 26576953 ~ 26579337 (-)
ggctb ggct coding upstream 1142275 26585791 ~ 26588645 (-)
G125672 NA non-coding downstream 9533 25419147 ~ 25419450 (-)
G125644 NA non-coding downstream 72402 25356366 ~ 25356581 (-)
G125643 NA non-coding downstream 73707 25354957 ~ 25355276 (-)
G125598 NA non-coding downstream 137660 25289718 ~ 25291323 (-)
G125717 NA non-coding upstream 10548 25454064 ~ 25454339 (-)
G125771 NA non-coding upstream 56459 25499975 ~ 25500274 (-)
G125772 NA non-coding upstream 57261 25500777 ~ 25500996 (-)
G125775 NA non-coding upstream 59262 25502778 ~ 25503003 (-)
G125777 NA non-coding upstream 61570 25505086 ~ 25505443 (-)
G125305 NA other downstream 652356 24775220 ~ 24776627 (-)
G125043 NA other downstream 1104147 24324580 ~ 24324836 (-)
G125003 NA other downstream 1158847 24269226 ~ 24270136 (-)
LOC110538705 LOC106577653 other downstream 1267540 24144519 ~ 24172836 (-)
G127083 NA other upstream 1118098 26561614 ~ 26562127 (-)
LOC110539285 LOC106579350 other upstream 1207860 26641958 ~ 26675649 (-)
LOC110485245 ubr5 other upstream 1827744 27231538 ~ 27278158 (-)
G129250 NA other upstream 2322641 27766157 ~ 27766532 (-)
LOC110485663 LOC106579570 other upstream 2653166 27933389 ~ 28149986 (-)

Expression


Co-expression Network