si:ch211-198c19.1 (LOC106605502)


Basic Information

Item Value
gene id si:ch211-198c19.1
gene name LOC106605502
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25459554 ~ 25460882 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021626064.2
acatgAGCCCTCCCTCAAACACTCATGACAGAACCCGGTCTTCCTCTGCTACAGCAAGGGTCAGGGGCAACACTGCGACCAACACAACCATATACCACAGTCTTTGAGCAGAGACCTGCAAGCTAAACCTACAGACTCATCCTATAGCGACATTGCGGGATAACCCTTAATTGGTGTTCAGCATGGCCAATCACACCAGCGTCCTGAGATGCATCCTGCTACTGCTATTGGCCGTCACTCTGGCCTCGGCTTTGAGAACATTGGACACGAATGAAGAGCTGGAGAAGACTGGCTTCGGGACCCCGCCCCCTCGCCACGGCCTCAAACTACTCCTCTGGTATGTCCAGACCTGCATCGACAACAACATGGTGTCTCTCTGTGACCCCAGGGAGGGAGCATACGGGTTCCATATGTTCAAGAACTATAAACTGTTACTCCCCAAACTGAAAGACCAGAACCTGTACACCTACTACACCATTGGTAACCTCCATTCCCACGGTGCAGAGAACCTGCCCTATGAAGTGAGGCGGTACTACGACAAGGACAACCTCCTCAGCAACCAGGACAGGGTGTTGGTGAAGTACAACCAGAACAACAATCACATCGACAAGATCTACATCTCAGAGCACTACAAGCAACGCAAGACCTACATGATCGGGCCcaatcttctctcctctctcagacagCCCAGCTGTCTTGCAATGATATGATGTATGAATATAAAATCTGTACATTATGCTTTTCACTGTTGTTTTTCTTGCCACAAACCTGATGGCATTACTAAACCTGTAATATGTCAACCTGACTTCATTGGTGATGTGTTCACTGTAACTTTCTGTTTCCTTTACAGACacgctatagaaatgcatttttaCAGACAGAACATTGCGATCCTGAGTGCACTGAAATCAAGTTAATTTATGTCTGCTATAATGCAGGTCAGTTTAGCACATTGACAAATGTCCTTGTTCAATCATTCCTATTGATGTTGATTCAACTGATGACTACAACATGACTATAAAATGTGAACGTAATGCAAAA

Function

NR:

description
uncharacterized protein LOC110539089

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021626064.2 True 1041 mRNA 0.46 2 25459554 25460882

Neighbor

gene id symbol gene type direction distance location
LOC110539072 cep162 coding downstream 16038 25428983 ~ 25443516 (-)
LOC110533704 cep162 coding downstream 31855 25417440 ~ 25427699 (-)
LOC110538828 grik2 coding downstream 348971 24862906 ~ 25110583 (-)
LOC110538978 LOC106605653 coding downstream 858169 24584393 ~ 24601385 (-)
LOC110538887 LOC106605647 coding downstream 918656 24531424 ~ 24540898 (-)
LOC110539098 LOC106605503 coding upstream 208144 25669026 ~ 25790259 (-)
LOC110539162 LOC106605511 coding upstream 1089950 26550832 ~ 26559134 (-)
LOC118938772 cg024 coding upstream 1116071 26576953 ~ 26579337 (-)
ggctb ggct coding upstream 1124909 26585791 ~ 26588645 (-)
LOC110539269 LOC106579366 coding upstream 1168694 26629576 ~ 26640996 (-)
G125717 NA non-coding downstream 5215 25454064 ~ 25454339 (-)
G125693 NA non-coding downstream 17805 25441632 ~ 25441749 (-)
G125672 NA non-coding downstream 40104 25419147 ~ 25419450 (-)
G125644 NA non-coding downstream 102973 25356366 ~ 25356581 (-)
G125771 NA non-coding upstream 39093 25499975 ~ 25500274 (-)
G125772 NA non-coding upstream 39895 25500777 ~ 25500996 (-)
G125775 NA non-coding upstream 41896 25502778 ~ 25503003 (-)
G125777 NA non-coding upstream 44204 25505086 ~ 25505443 (-)
G125781 NA non-coding upstream 49949 25510831 ~ 25511037 (-)
G125305 NA other downstream 682927 24775220 ~ 24776627 (-)
G125043 NA other downstream 1134718 24324580 ~ 24324836 (-)
G125003 NA other downstream 1189418 24269226 ~ 24270136 (-)
LOC110538705 LOC106577653 other downstream 1298111 24144519 ~ 24172836 (-)
G127083 NA other upstream 1100732 26561614 ~ 26562127 (-)
LOC110539285 LOC106579350 other upstream 1190494 26641958 ~ 26675649 (-)
LOC110485245 ubr5 other upstream 1810378 27231538 ~ 27278158 (-)
G129250 NA other upstream 2305275 27766157 ~ 27766532 (-)
LOC110485663 LOC106579570 other upstream 2635800 27933389 ~ 28149986 (-)

Expression


Co-expression Network