tsnare1 (LOC106605505)


Basic Information

Item Value
gene id tsnare1
gene name LOC106605505
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25831403 ~ 25974877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943565.1
AGTGCTGCAGGAGCAGGCGGAATGTCATGTGATGTTTAAGCCGTAGCTGTCTGGAAGCTGCTGCTAAATTGGAGCTGAATCTCAGAGCACACCactaactctccctctctttccagaGGAAGACAGACCCAAAACAGCCAGGACAGGATGTCTTACGGATCCATCGATGGAGGCTCCTTTGGAGGCAGCCGAAACCCCTTCGGAGGCCCCAAGAGGCAGGGCTACCAACCAGTAGCAACACAGGTCAGCTCCTCAGAGCTGCAAGACGTGTTTCAAGAGACCTCCTCCAACATTTTCCAGATCAACGCAAATGTTGTAACATTAGAGAAGAGTCTTCAATCTTTGGGAACGTCCAGAGACACTGCTGAACTGCGACAGAGCCTACATTCTACACAGCAGCAAACGAACAAAGTCATCACCAGCACCAGTCAACTCATCAAACAActctctgacatcatcactggcTCTAcacggCAAGATCGTCTTCGCCTGACTAGACTTAAGACAGAACTCTCAGAGTCGGTTCAACGCTATGGAGATCTGCAAAAGAAAATTGCAGACCGTTCGAGGGCCTTGCTACCCCCGGCACAGACAGAAATGAAGCAGagTCCCCAGACTCCATTTGCAGAGCTGTGTGAGGAGGGGGGTCCCCTGTTTGGCAGTGCAGCAGAGAGCTCCGGGGGGGATGGACAGGAGCAAGCGTTCCTCTCAGAGATCAGTGAGGAAGACGTGGAGGCCCTTCGCCAGAGAGAAGAGGCCCTGCTGCAGATTGAGAGGGACATGTTGGATGTCAGCCAAATCATGCAAGATCTGGCCAGTATGGTGCACGAGCAGGGAGATGCCATAGATAGCATTGAGGACTACATTCAGACCACCACATCCAACGTGGAGTCAGCCAATCAGGAGCTAGCAAAGGCCAGCCATCACCAGAGGCAGATTAGGAAGAGGAAGTGTTACATGCTGGTGGCGGGAGGCTTCATCCTcaccctcctcatcatcatcatcgctgtGTCAGCAAGAAAATGAAACCAACTCCAGAGgTAGCCGCTGTCATAATGCTGTGACCTCGCTGCTTCTGCCCCACCTGACCACCTGATCCCTGACCTGTACCAGCTGTCTCAGAGCAGGAGGGGCCTGCCCCACACCAACACCTCTACTTCGTCATGGCTGTCCCTCCTTGGTTATATAGTTAGATATTTGGTGTGCGcaggtatatgtgtgtgtgtgtgtgtgtggggtgtgtgtgtgtgtgggggggaataGCTGGTACTTCTATTACCATCTTCAAGTGAATGGCATACTAGTCTACTGTGGCTCATTTATACTGTACCTAACTGTGGCAGCCAACCAGCCAATCATGGAAGAGAAGCTTCAGGTGTGGTGTCACCCAGAGCTGTTGATGTATCCACTTACTTTACCCTGTTTTCCTCTGTGTTTGTtaacttgtttttgttttttaaacactGGATCATATTTATCTGATGCTACTGTATCTATGAAGTATGATATTAAAATGTTGTGTAGTACTTATAAATGATCATTAGACAAAAATGTATCAAATGGTATGAAAAAAACCAACAGTACTTTAAAATATGATTCACAGCTTTTTTCATAGTCCTATTTTACTATCATTTTACTCTTGCTATGCAAACACAGGCACACTTGCACACAAACATCTCTATCTGCCATGATCTGAGTGTAAAGAGTGGAACATGTGACATAAATTACATGTTTGTTGATCGCCTGAAGCACTCACCCTCTGGCCAATCAATTGGCAGTAGAGTCAACCACTTTCCCTCCATTCCCTCCAAATGTCTCATCCTGTTACATATTTTCCAGGAAGGCTTATTTAGAGATAGTAATAAATAGACTTAATTAATCTCTCAGAGGGGTGATTATCATCTCTCTGATTTCTCCTCTGGGCTGTATGTGTGTGCTATTACTGAGTTCTCTGAAAAGATGGGTAAGACTCTTCAGTGTGCAGCTTCACTGTCAGCTCCTAGCCTTTTCTGCTTCCAACGTCATACATCCTTCTTTATCACTCTTCCCTCACAATCCCCCGGCATCAGTGGGCTTTAGCTCTTAACTCATCGCATGCATACACAAATCTGAAGtgttttattattgttattttctgtTAGTCTTGCTGAATCATTGTACCAagcttttttattttgttttttaatttgTACCTTGCTGAGAAAAGGAACAAAATGAACCAAAATCACCAAATTGTTTTTCTGAACCAATCACAGGATGTTGGTGGCACTTTAACTAAGGACTCGTGGCAATGGCTGGAGCGGGAATGTTGGAATGGTATTAAAAACATCAAAaacagcctcccgggtggcgcagtggttaagggcgctgtactgcagcgccagctgtgccatcagagtccctgggttcgcgcccaggctctgtcgtaaccgaccgggaggtccgtggggcgacgcacaa

Function

NR:

description
t-SNARE domain-containing protein 1-like

GO: NA

KEGG:

id description
K13814 TSNARE1; t-SNARE domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943565.1 True 2460 mRNA 0.47 12 25831403 25974877

Neighbor

gene id symbol gene type direction distance location
LOC110539045 mrap2 coding upstream 417028 25403433 ~ 25414375 (+)
LOC110534557 LOC106605501 coding upstream 435069 25377221 ~ 25396334 (+)
LOC110534548 LOC106579462 coding upstream 505747 25294643 ~ 25325656 (+)
ascc3 ascc3 coding upstream 539879 25151016 ~ 25291524 (+)
LOC110538989 NA coding upstream 1108030 24685282 ~ 24723373 (+)
LOC110539113 LOC106605506 coding downstream 124266 26099143 ~ 26113953 (+)
cdk14 LOC106605507 coding downstream 148836 26123713 ~ 26330981 (+)
fzd1 LOC106605515 coding downstream 348130 26323007 ~ 26326895 (+)
LOC110539173 LOC106605512 coding downstream 477804 26452681 ~ 26547503 (+)
LOC110539182 LOC106605509 coding downstream 604881 26579758 ~ 26581796 (+)
G125957 NA non-coding upstream 46500 25727307 ~ 25784903 (+)
G125930 LOC106605503 non-coding upstream 99364 25674931 ~ 25732039 (+)
G125926 NA non-coding upstream 114447 25671258 ~ 25716956 (+)
G125925 NA non-coding upstream 160509 25669061 ~ 25670894 (+)
G125902 NA non-coding upstream 205007 25626191 ~ 25626396 (+)
G126341 NA non-coding downstream 40939 26015816 ~ 26016025 (+)
G126375 NA non-coding downstream 62752 26037629 ~ 26038230 (+)
G126418 NA non-coding downstream 113355 26088232 ~ 26093529 (+)
G126397 NA non-coding downstream 143110 26117987 ~ 26118323 (+)
G126396 NA non-coding downstream 144931 26119808 ~ 26120179 (+)
G125934 NA other upstream 73550 25682880 ~ 25757853 (+)
G124451 LOC106578403 other upstream 957569 24873051 ~ 24873834 (+)
LOC110538915 LOC106605649 other upstream 1287177 24540963 ~ 24544247 (+)
G124121 LOC106605585 other upstream 1682810 24146861 ~ 24148593 (+)
G126387 LOC105417071 other downstream 74973 26049850 ~ 26050104 (+)
G126727 LOC106581475 other downstream 651972 26626849 ~ 26628649 (+)
G127190 cf113 other downstream 819333 26794210 ~ 26795762 (+)
G127198 LOC106605538 other downstream 882821 26857698 ~ 26861242 (+)
LOC110485212 LOC106605536 other downstream 1173299 27147880 ~ 27175747 (+)

Expression


Co-expression Network