LOC110539113 (LOC106605506)


Basic Information

Item Value
gene id LOC110539113
gene name LOC106605506
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26099143 ~ 26113953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021626094.2
CGCTTGTACTGCGCCCTGCACTAGGTGTCAGTATGTGCTTTTTCGTCCTTTTATGGAAAGTATCTTCAACCTAGAAGAGAACCAGGAAGTAACTCCGTCATTTGTTTAGATTATTAGAACGGGAGTTAGCAACTTCGAGAGTTACGTTTTTGCTTGCTTTAGAAAGTGAAAGGTGTAGCTAGATAGAGTCGTTCAAAATAGCATCATAACATGAGTAAAACAGAGAGGGGAATCATGAGCTCATTGCTTGTTGTTGTGGCTGTAACCTATGTCCTCGTTAGCCGAGCAGAATGTCACACTAGTACTACGCCAACGCCATTGAATTCTTGCAAAGCCTTCTCAACTTGTGACTCATGCACTCAAAACCCAAAGTGCCTGTGGTGCATGACCAACGACACGTGCACAGACTACCCAGTGAGCTACATTCTGCCTCCGCCTGCAGTGTGTAAACTGTCACAGGCACGATGGGGAGTGTGTTGGGTGAACTTCGAGGCTCTGATCATTGCCATGGCAGTGTTAGGCGGGACCATCATCATCAGCATTGCagtctgttgctgctgctgctgttgctgcaaGAAACGTCAATCAGGGCCagacagagatgaggagaggtttgccaggaggagagaggagatcagaCAGCGTGCTGATGAACGgaAGGTGGAGAGGAAGGTGAGGCATGATGACATCCGCAAGAAGTATGGTCTTGTCCCTGACTCTGACCACCCATACAGCAAGTTTGAAAATGAGTAAACCAGAAacctgtgtgagagagaagagtTGTTCAGATGGCTCTACTCTGTTCCATCCTCTTTGGGCTGACTACCATCCTGTCCTGCTGACTGTTTTAGCTTagagagcagacacacacacctatataTCAAGACCGGTCTATCATCATGATTCATCTAAATCAAAACCTTTGCCTATAATTATTAAATGCAGTTTTTATTCATTCATTTTAGGTTCTGATTGAAAATTATTTACAGTTTGAGAATGTTATGTTTTTCACACGATTAAGAAGTTTGAAGAAGTCTGTAATATTTAGTTTGCTGTTGGAGACGTGGCACTGAGTGGAGCTTAACTTTCTGCACATTGTCTGTGTATTTTTGTGAAATCTGATTTAAAGAGCCTTTGTTTTAAATTACTGTAATATCTGTGAGTACGTTTTCGCTTTGTAGATATTTCATAAACCAAGATCATAATTATGCTCAA

Function

NR:

description
pituitary tumor-transforming gene 1 protein-interacting protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021626094.2 True 1215 mRNA 0.43 7 26099143 26113953

Neighbor

gene id symbol gene type direction distance location
tsnare1 LOC106605505 coding upstream 124266 25831403 ~ 25974877 (+)
LOC110539045 mrap2 coding upstream 684768 25403433 ~ 25414375 (+)
LOC110534557 LOC106605501 coding upstream 702809 25377221 ~ 25396334 (+)
LOC110534548 LOC106579462 coding upstream 773487 25294643 ~ 25325656 (+)
ascc3 ascc3 coding upstream 807619 25151016 ~ 25291524 (+)
cdk14 LOC106605507 coding downstream 9760 26123713 ~ 26330981 (+)
fzd1 LOC106605515 coding downstream 209054 26323007 ~ 26326895 (+)
LOC110539173 LOC106605512 coding downstream 338728 26452681 ~ 26547503 (+)
LOC110539182 LOC106605509 coding downstream 465805 26579758 ~ 26581796 (+)
LOC110539212 LOC106605509 coding downstream 467815 26581768 ~ 26585441 (+)
G126418 NA non-coding upstream 5614 26088232 ~ 26093529 (+)
G126375 NA non-coding upstream 60913 26037629 ~ 26038230 (+)
G126341 NA non-coding upstream 83118 26015816 ~ 26016025 (+)
G126021 NA non-coding upstream 233022 25865690 ~ 25866121 (+)
G125997 NA non-coding upstream 265424 25826199 ~ 25833719 (+)
G126397 NA non-coding downstream 4034 26117987 ~ 26118323 (+)
G126396 NA non-coding downstream 5855 26119808 ~ 26120179 (+)
G126543 NA non-coding downstream 219065 26333018 ~ 26333224 (+)
G126545 NA non-coding downstream 221604 26335557 ~ 26335980 (+)
G126387 LOC105417071 other upstream 49039 26049850 ~ 26050104 (+)
G125934 NA other upstream 341290 25682880 ~ 25757853 (+)
G124451 LOC106578403 other upstream 1225309 24873051 ~ 24873834 (+)
LOC110538915 LOC106605649 other upstream 1554917 24540963 ~ 24544247 (+)
G126727 LOC106581475 other downstream 512896 26626849 ~ 26628649 (+)
G127190 cf113 other downstream 680257 26794210 ~ 26795762 (+)
G127198 LOC106605538 other downstream 743745 26857698 ~ 26861242 (+)
LOC110485212 LOC106605536 other downstream 1034223 27147880 ~ 27175747 (+)
G127644 LOC106605534 other downstream 1076038 27189991 ~ 27190593 (+)

Expression


Co-expression Network