LOC110539212 (LOC106605509)


Basic Information

Item Value
gene id LOC110539212
gene name LOC106605509
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26581768 ~ 26585441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021626146.2
TTTCAAAAGTATACAATAAATTAGATTAAAAGCTGTACTGTATGCAAACCATCCAAGTCTGGCCTGCCTGCTTTTTTAAAAGTATGAATGGGGTTTAAGAGCAGTAGTGGTCTAAAGAATAAAAAGAAGTATGACAGATTACTTCAAAAGTGCATTTACAAGGTAACTGATTATAATCCAACTGTAGGTATCTGACGCTAATGGGAGTGGAACTCTACCGGCAGCCAGGGCTGGCCACTATGTTCCACAACCTCACCAAGCTGGAGACCCTGAACCTGGTCACCTGCAGGATCCTCAgtctggaggaggagatgagCAGAGACCTGCATTCCCTCAGACAGATGTCAGTCCACATCCCAGAGGAGTTCAGTGTGATGGAGAGCTTCACAGAGCCGCTGACCAACCTGAGGTACCTGTTACTCTACAATTTTCGCTTGGACTGCAGCTGTGACAACACCTGGCTGCTCGCCTGGGCTGAAAGACAGTCACATGTCCAGGTCGTATTTTATCACCCTGGGGAAGCAGACGTGACATGTAAAAACGAGAATGGAATCCAGAACTTTGCCAGGTACTCAGCAGCCAACTGTTCCCTGGACGTGGGCTTTGTCCTGTTCCTCTGCACCTCGCTGGGCCTGCTCCTCTTCATGCTGGTGGTGCTGCTCCATCAGCTGGCTCGGGAATACCTACTGGCCTTCTGCCACATCATCCGCTGCTGGCTGGAAGAGGCTGTACGGAGGCCCAACCTCAGGGGGCGCTACTGCTATGATGCCTTTGTGTCGTACAGTGGGAGAGACGAGCGCTGGGTGGTGGAGCAGCTGCTTCCGGGCCTGGAGCAGAGGGGGCCTCCCTTCCTGCGTCTATGTCTGCACAGCAGGGACTTCCAGTTGGGGAAGGACATTGTGGACAACATCACAGACAGCCTCTACGGCAGCCGCTACACCGTGTGTGTGGTGAGTCGTAACTACCTGCGCAGTAACTGGTGCTCCCTGGAGCTGCGGCTGGCCACCCTCCGTCTGCTGGTGGAGCAAAGGGACATCCTTATCTTGGTCTTCCTGGAGGACATCCCTCCTCGCCAGCTGTCTGCCCACCACCGCCTGGCCAAGCTGGTCAAGACCAGGACCTACTTGGACTGGCCCCAGGACCAGGCCATGCAGCCTGCCTTCTGGGACCGTCTGTGGACCAAACTGGTCCCTCCTGAACCACACCCTGGCCAGTGACCAGATACAGTACTACACTCTTTTAAAAGGGGTTCTTAAAGGGGTCTTTGTTGGgtgaaaaggttctacctggaaccataaagggttctccTTCAGAGATGAGCAAATAACTCTTTAGGGTTTTAGAGAGCACCTTTTTTGTGTACATGGTATTCTGCTTCCAATTAACTTTGTATGAACTGTGTGGACACAATGACCAACCGTTAtcaacagcagagggagacaaagaCCTTCAATCATATACAGTACACAGACTTCCGATGTTCAAAATATGTTTGCAGCAAAAAAAGGAAACACCTTCTGATCTAACAATGACGTTTATGGCTTTGCATACATTTTTATTATTGGATTCAATAACatgttccgtctctctctcctgtcttcttctaGCGTTGCATTACTGTATGACACAGATGTATGATACAGCTGATTTTCTCTGGTCACCATCTCAGCAAAGCCACATACTGGAAACTCACTTCAGGGGGCTCTTCATCAGTAGACTCTTAAGGATTAACAGAAGAAGTGATCTTGAATGTGGCCTGGCCCCATATCTTTCTGTGCTGTCTTAACAACGTGGTCATGTCACTGACCCATAGgatttggaaagacaccacaaacagatctgagaccaggctatctTGAATGAGGCTGATTT

Function

NR:

description
PREDICTED: toll-like receptor 13

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021626146.2 True 1872 mRNA 0.50 5 26581768 26585441

Neighbor

gene id symbol gene type direction distance location
LOC110539173 LOC106605512 coding upstream 34265 26452681 ~ 26547503 (+)
cdk14 LOC106605507 coding upstream 250787 26123713 ~ 26330981 (+)
fzd1 LOC106605515 coding upstream 254873 26323007 ~ 26326895 (+)
LOC110539113 LOC106605506 coding upstream 467815 26099143 ~ 26113953 (+)
tsnare1 LOC106605505 coding upstream 606891 25831403 ~ 25974877 (+)
LOC110539196 LOC106605517 coding downstream 10824 26596265 ~ 26613437 (+)
trnar-acg-2 NA coding downstream 55726 26641167 ~ 26641239 (+)
LOC110485091 LOC106605521 coding downstream 153483 26738924 ~ 26741780 (+)
LOC110485092 LOC106605522 coding downstream 161530 26746971 ~ 26765817 (+)
rwdd1 rwdd1 coding downstream 185023 26770464 ~ 26779479 (+)
G126695 NA non-coding upstream 18426 26563047 ~ 26563342 (+)
G126694 NA non-coding upstream 19760 26561498 ~ 26562008 (+)
G126664 LOC106579390 non-coding upstream 23132 26558016 ~ 26558636 (+)
G126679 NA non-coding upstream 54732 26525778 ~ 26527036 (+)
G126748 NA non-coding downstream 74571 26660012 ~ 26661367 (+)
G127165 LOC106605523 non-coding downstream 175001 26760442 ~ 26761528 (+)
G127188 NA non-coding downstream 206587 26792028 ~ 26792291 (+)
G127202 NA non-coding downstream 239871 26825312 ~ 26825904 (+)
G127209 NA non-coding downstream 242807 26828248 ~ 26828451 (+)
G126387 LOC105417071 other upstream 531664 26049850 ~ 26050104 (+)
G125934 NA other upstream 823915 25682880 ~ 25757853 (+)
LOC110534557 LOC106605501 other upstream 1199456 25377221 ~ 25396334 (+)
G124451 LOC106578403 other upstream 1707934 24873051 ~ 24873834 (+)
LOC110538915 LOC106605649 other upstream 2037542 24540963 ~ 24544247 (+)
G126727 LOC106581475 other downstream 41408 26626849 ~ 26628649 (+)
G127190 cf113 other downstream 208769 26794210 ~ 26795762 (+)
G127198 LOC106605538 other downstream 272257 26857698 ~ 26861242 (+)
LOC110485212 LOC106605536 other downstream 562735 27147880 ~ 27175747 (+)
G127644 LOC106605534 other downstream 604550 27189991 ~ 27190593 (+)

Expression


Co-expression Network