LOC110539196 (LOC106605517)


Basic Information

Item Value
gene id LOC110539196
gene name LOC106605517
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26596265 ~ 26613437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943660.1
tctttaatgattttccgggccttcctttcacactgcctgatatagaggtcctggatgtcagggagTTCGGCCCCagagatgtactgggctgtccgcaccacgaTCGAGGACGGTGCAGTtgtcataccaagcagtgatgcagccagtcaagatgctatcaatggtgcagctgtagaactttttgaggaatTGAGAGCCCATGACAAAAAGGTGCTAAAAcgccttcttcatgactgtgaCTGTATGTGTGATTTGGAGCGCAAAGAACTTGACACTCTCGTCCCGCATCattgcagccccgtcgatgtggatgggagaGTGCTTGCCTCAATCCCAAAatgtttttcctgtagtccacgatcagctccttggtcttactgacgttgagggaaaggttgttgtcccggcgccacactgccaggtcactgacctcctccatgtaggccgtctcatcgccGTCGGTGATCAAGCATACCACCATCGTGTCATCAGTAAACTTGCACACTTGATAttggtgatggtgttggagtagaGCAACACCATTGCGATTGAGGAGTCAATCGCAATGTAACTCTCGAGGCTAATGTCAGAGTGTACTATACTTGTCCCTCTTGTGAAAGGACTGTATGTTATTAAGCCGTTAGCCATAAGCCATTAGGCCATAGCTCTTCAGAGGGGGTTTCAGGGAAATCTGTAGATAGACACAACGTCAGCGAGGACATACCCCTGGAgggcttcctctctcactctctttgatTGTCTCCTTTTCGTTTCTTTTGGTTCGATATTTCATCCTTTTATTTGTACTGTATCGTCACTGTGTGTGATGCTGTATATTCACTCATTTTTACGTGTACAATTTTTTCCTCTGCGTTGCTTTTTAATTTAAATGCAATAAAAGTGTAATGGATATGTTCCTTTTTAGATTGAAGAATGTGCCTTACTGATTGAATTCTTATAGAAACAGCTATTTGAATCATTGACACCTCAACACAGTGGTTGTGCTGTTTTTGCACATCGGACTCCAGTACTATATTTGAAGTTGTATGAACagtaaaaaggaaaataaatacattatttccaGCATTGAATCTTGCACTGTGAAGTCCATTGTACAAAAGCAAACACATGCTATCTGAAGCTTACCCTAAGGAATATAAAAGGTGTTGGTGATGGTCCACTGTCTCTATGACAGGCTTATAAGCTCAAGTTTTTAAGAAGAGCTGTGAAAATCAAACATTCACCTGGGTTACATAAACTCCATTAAACTCTAGCCCATGCCTACAGTACTTAACACGTTAGGCCCTCCCTCTCGAATTGGGGGACCTCAGTAGAATGGGCAAGCGTTCTATAAACTCCATGCTATTTCTTCAACCATTGCAAATGTGTCTGACTCATACAGCCTCCTGTTGAAACACTTTCCCTGTTTCCCAGACGCTGTCATTGGATTTGTTCTACTCCAGACAGGAGTGCCATTCCTACTCCCGGTATTTCAGACAGGCTTACTGACTGTCAAGGTTGTTCACCGGCACCGCACTGCCACCGACTCGACCAGACCTGAAAATTGGCTTGATTGTGTGCTCAGGACGCAACGATGGGGAAGGACGCCGCAAGAGCAGAGTGGGACAATCCCATGCAATTTGTCCTGGCGTGTGTATCATACGCGGTTGGACTGGGAAATGTGTGGCGTTTTCCATACTTGTGTCAAATGCATGGCGGGGGTGGGTTCCTGATCCCATACATGCTCATGCTGGTCCTGTTGGGGGTACCCCTGTTCTACATGGAGTTAGCCATTGGCCAGAAGATGCGTCTGGGCAGCATTGGAGCATGGAGAGCTATTAGCCCCTATCTGGGGGGAGTGGGTATGGCCAGTGTTGTGACCTCCATGTACCTATGCCTCTATTACAACGTCATCAATGCATGGAGTTTCTGGTACCTCTTTCATTCATTCCAGTCGATCCTGCCATGGGCAGAGTGCCCGGCTAACAGCAACCTGACCGGCCCTGTGGAGGAGTGTGAGCGGGCCACGCCCACCCAGTACTTCTTCTACAGAGAGACCCTGGACATCTCCGGGTCCATCGAGGAGAACGGAGGGATTCACATGGGACAGGCGCTCTGCCTCCTGCTGGCCTGGATTATTGTCTACCTGTTCATCGTCAAGGGGGTCAAGTCCACCGGGAAGGTGGTGTACTTCACAGCCACATTCCCCTACCTGGTCCTCATCATCTACCTCATCCGTGGGGTCACCCTTCACGGAGCCATCAACGGTGTGAAGTACATGTTCACGCCCAAGATGGAACAGCTGGCTAAACCCACCACGTGGATCAACGCGGCCACTCAGATCTTCTTCTCTCTGGGCCTGGGCTTTGGATCCCTCATCGCCTTTGCCAGCTACAACCAGTACAACAACAACTTTGAGAAGCAGGCCATCGTCGTGTCCATGGTCAACAGCGGCACCTCCATCTTTGCCAGTATCGTCACCTTCTCCATCTATGGCTTTAAGGCCACCTTCAACTACGAGAGCTGCCTGGAGAGGGTGCGACTGCTGCTCCTGAACACCTTTGATCTAGCAGAGGACACCATCAGTCTGGAGAATGTCAACCACTGGATCGCTGAGCTGAACAGGACACACCCAGAACAGTTTGCCAGTCTGGGAGGTAGGCTGGAGACCTGTGACCTAGAGGCTGAACTAGACACGgctGTTGAGGGTACAGGCCTGGCCTTCATAGTGTACAGTGAGGCCATTAAGAACATGCCCGTGTCTCAGCTGTGGTCTGTGCTCTACTTCatcatgctgctgctgctgggcaTGGGCAGTATGCTGGGCAACGTCATCGCCGTCATCACCCCCCTCAGTGACTTGAAGTTCATCAGCCACTACATGAGCACCAAAACACTCaatgGTCTGGTGTGTCTATTCTGCCTGCTGCTTGGCCTGGGCTTCACCACCCGCTCTGGGAACTACTGGTTCACCATGTTCAACGACTATGGAGCCACCTTCTCTCTGCTCTTCATCGTCCTCATTGAAGTTATCACCGTCTGCTACATATATGGCatcaaaagGTTTGAGAAGGATGTAGAAGACATGTTAGGTCATCGTCTTAACTGGTACTGGAAGATCATGTTGGCAGGAGTCAGTCCCATCCTCCTCATTGCCCTATTCATCTTCTACATCGTCAACTACATCCAGGGAGGAACGCCCACATACCAAGCCTGGAACAAAGAACTGGGGAAGTCTGTGGTGACGGAGTATCCTCCCTACGCCCAAGCCTTCATCGGCCTCCTCCTAGCCTCCTCTGTCTGCTGTATCCCTTTGACGGCCCTCTACACCTACTGTAAGAAGAGGAACCTGGCCAGTGGGAAGAGAGAGCGCACTGTCAGCACTGTGTCATTGTAAAGACCGACGTATTGgttgacagacagagtgacacaAGGCAGAGCTGCTACATTACGGCCCTGAGACTGACTGGACCCGCTAGTTATAGGATCGACAGCCTACCTTACGTATCATGGCTGTCTTAACAGAACAGTACCTCACTCCCCTGGTGCAGTGGTTCATGCCACACCACAAACCAAAggccctctttctccccccaggGCAGGCTGGCTCTGCcactgtgctgctggtggacagACCGCCAGATCTGTACCTAGCATTAGCCCTAGTCGTCCTTTGACAACTAACACTTACTGGGTGATAATAACTTTTGTATTTTGTAGCTGTGTTTCTGAGCAGGGCTTAGAACTACGTCCAAAATATTTCAGAAGTGAAGAACGAACAAATACTCTTGTCAATGGTTTATTGCattgtttaaaggcccagtgcagtaaaaAGCGTGATTTCCTGAGTTTTATACATATTTCTaggctatgaggttggaataatactgtgaaattggggAAATTATTATAATCCccctttagtgtaagagctgtttggtgGGATGGAGCGTGGTAAatcagttaatagaccaataagaaagagagatcCAAACCTCTGCATATAACAGCTTAGTTTTCtgttttctcctccccactcagatCACTCcaagacagtcctagcaaaattcttgcctgagaaattgctctttgctaagtagctattttagtttatttttgaccattttaaatgaatacaatcacagtaaggtacttaattgtaacccatcaattatttgatattgagataaaaacggctgcattggacctttaatgtTTAGCTTTCAGTAGCAGATTCTTTGAGACAGTGTGTCAACCCTCTTTATTTAAAGCTCCACAAAATGTTTAAGATATTTTTTCCCTTAAATGTCATTATGGTGAAGTATTTTGTATCCCATTGGTTTACTGTAGATATTTTGTAGATATTCTGTAGATTACTCAATGAGTTGTGAGATATGTTGAGTGCCTGGATGTACAAGGCAGACCTTCGTCTGACTCGGTTATGACTGAATACAGTCTGACTGGTGTCAAATGACCAAGAACAACTTGTAGAAATGGCTGTATGTTTGCAAACATACTGATAATTTCACATGTAACGAACAAATCTCTATGACCAGGACCAAGACCATATCTATACCTATGGGCTTTGTTGTCAATCCACCATCAGTGACTTCTAACCAGGATCATACTTGGTAGGGTGCAATGTAACAGAATGTTCAGATACATATATATTTGGTATAACATACACTATTTTCTGTCTAATGGAATTGGAAATCATGTCAGCTCTATAGGAAGCATTTCTTTCTGCAACATTCCCAGAACGTTTCAGCTCCTGAACGCGTGAAAGTATCTGTGCTCTTCTAAATAGAAAGTACTGTAGTGTTGCACTGCTGTTATAGAATCCATATCAACTGGACTTAGGATACAGCCCAATGGCTATGCACCAATGTGCTGTGCATATTCACAAACAAAAACACCATGTAGGCCTACACTTTTTACAGTCAAATGTATGGGTTTGCACAGAAACAATTGCCAAACATGTTGTAATACTGTGAGCATTTTTAATGTGAACAATTTGAAACAAtaacaggggcgcaactttcactggggacagggTGACATGCcctcccacattctgaaattgcatttttgtcccctgCCGGTTTtgtcattggaatgtgatacaaaatgtGGCAactgtgtgctttaggaccatgcagaggcctccgagcggtcgggtaggctgtttgaaGTGTTTATTATGTTGAGTACAGGTTGGTGTTAGTGTGAACCAAGTATTGGTGTGAACAATTCTTATTTTAACTGTTCATATGTGTTATGTGTTCATATTTTATAAGTAGTATTTTCTATGGTGAAATTATTAAAGACATGAAGACATTT

Function

NR:

description
sodium- and chloride-dependent transporter XTRP3-like

GO: NA

KEGG:

id description
K05048 SLC6A15S; solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943660.1 True 5340 mRNA 0.46 11 26596265 26613437

Neighbor

gene id symbol gene type direction distance location
LOC110539212 LOC106605509 coding upstream 10824 26581768 ~ 26585441 (+)
LOC110539182 LOC106605509 coding upstream 14469 26579758 ~ 26581796 (+)
LOC110539173 LOC106605512 coding upstream 48762 26452681 ~ 26547503 (+)
cdk14 LOC106605507 coding upstream 265284 26123713 ~ 26330981 (+)
fzd1 LOC106605515 coding upstream 269370 26323007 ~ 26326895 (+)
trnar-acg-2 NA coding downstream 27730 26641167 ~ 26641239 (+)
LOC110485091 LOC106605521 coding downstream 125487 26738924 ~ 26741780 (+)
LOC110485092 LOC106605522 coding downstream 133534 26746971 ~ 26765817 (+)
rwdd1 rwdd1 coding downstream 157027 26770464 ~ 26779479 (+)
LOC110485096 LOC106605526 coding downstream 200047 26813484 ~ 26823336 (+)
G126695 NA non-coding upstream 32923 26563047 ~ 26563342 (+)
G126694 NA non-coding upstream 34257 26561498 ~ 26562008 (+)
G126664 LOC106579390 non-coding upstream 37629 26558016 ~ 26558636 (+)
G126679 NA non-coding upstream 69229 26525778 ~ 26527036 (+)
G126748 NA non-coding downstream 46575 26660012 ~ 26661367 (+)
G127165 LOC106605523 non-coding downstream 147005 26760442 ~ 26761528 (+)
G127188 NA non-coding downstream 178591 26792028 ~ 26792291 (+)
G127202 NA non-coding downstream 211875 26825312 ~ 26825904 (+)
G127209 NA non-coding downstream 214811 26828248 ~ 26828451 (+)
G126387 LOC105417071 other upstream 546161 26049850 ~ 26050104 (+)
G125934 NA other upstream 838412 25682880 ~ 25757853 (+)
LOC110534557 LOC106605501 other upstream 1213953 25377221 ~ 25396334 (+)
G124451 LOC106578403 other upstream 1722431 24873051 ~ 24873834 (+)
LOC110538915 LOC106605649 other upstream 2052039 24540963 ~ 24544247 (+)
G126727 LOC106581475 other downstream 13412 26626849 ~ 26628649 (+)
G127190 cf113 other downstream 180773 26794210 ~ 26795762 (+)
G127198 LOC106605538 other downstream 244261 26857698 ~ 26861242 (+)
LOC110485212 LOC106605536 other downstream 534739 27147880 ~ 27175747 (+)
G127644 LOC106605534 other downstream 576554 27189991 ~ 27190593 (+)

Expression


Co-expression Network