LOC110539269 (LOC106579366)


Basic Information

Item Value
gene id LOC110539269
gene name LOC106579366
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26629576 ~ 26640996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021626149.2
ATGTCTGACCCTGGACGCAAACTCAGGTCCAGCCATAATATACAATGTGCACATTCATTGACACGTCACTAGGTCAGACCTCTAAAGATGGCGACCGCCTACGAGAAATTCAACCTGCACACTACCCCAGAGAAGTTTTACATTGAGGCTTGTGATGACGGCTCCAATGATGTACTGTCCATTGACAGAGTGTCCACAGAAATGATCCTCACCGTGAGGAAGGACATTCCTCCCCATGCGGTCACCAGGCCAATATGTGGGATCATGGGAACTATCCGTCTGGTGGCAGGCACGTACCTCATCGTTGTCACAAAGAAGAAAAAGGTGGGTGACCTGTTGGGCCATGCTGTGTGGAAGGCTATGGACTTTGACGTTATCTCTTACAAGAAGACTGTGCTGCacctgacagacaaccagATGCAGGACAACAAAGCCTTCCTGTCCATGATCAACAGTGTTCTGCTCACAGACGGCTTCTACTTTGCTACAGACTACGACCTGACCCACACTCTGCAGAGACTTGCCAACACCAGCCCTGAGTTCCAGGAGATGAGCCTGCTGGAAAGGGCAGATCAGCGGTTTGTGTGGAATGGTCACCTGTTGAGAGAATTCATGCCACAGCCAGAGCTGCACAGGTTTGCTTTCCCAGTTGTCCACGGCTTCATCATTATGAAGTCCTGCTGCATCAATGGGAAGATCTTTGACTGGAACATCATCTCCAGGCGGAGCTGCTTCAGGGCTGGAGTACGTTACTACGTTAGAGGCATTGACTCAGAGGGTCATGCAGCTAACTTTGTGGAGACAGAGCAGATTGTCCAGTGCAGCGGGGGCAAGGCCTCATTCGTACAGACCCGAGGCTCCATCCCCTTCTACTGGTCCCAAAGACCCAACCTCAAGTACAAACCAAAACCTCAGATCAGCAAAACCATTGACCATCTGGATGGCTTCCAAAGGCATTTTGACTCGCAGATTATCATTTATGGAAAGCAAGTGATTTTAAATCTGATTGACCAGAAAGGCTCAGAAAAGCAATTGGAACAGGCCTTTGACAAAATGGTGTCCAGCTTGGGCAACGGCATGGTCAAATACATAGCGTTTGACTTCCACAAGGAATGCAGTCGGATGAGGTGGCATCGCCTGCAGATCTTAGTCGATATGGTGACAGAGATGCAGGATGAGTATGGGTACTTCCTGGTTGATGTGGATGGGAACGTTCTGGTGCAACAGGAAGGGATGTTCCGCAGTAACTGCATGGACTGTTTGGACCGTACCAACGTCATCCAGAGTCTGCTGGCACGACGCTCACTGCAGTCACAGCTGGAGCGGCTGGGAGTTCTCCACATGGGCCAGAGGATTGAAGATCAGTCCGACTTCGAGAAGATCTACAAAAATGCGTGGGCAGACAATGCCAATGCGTGTGCCAAGCAGTATGCTGGCACAGGGGCCTTGAAGACGGACTTCacaagAACAGGGAAGAGGACACAATGGGGGctggtgatggatggatggaactcCATGATCAGATACTACAAGAACAACTTCTCAGATGGTttcagacagGACTCTATTGATCTGTTCCTGGGTAACTATTCCATTGATGAGGCAGACATGACCACACCCCTTCATGAGACCAAAGACTGGAAGTTCCTCACGTTGCCCATTATCATGGTTGTGGCATTCTCCATGTGTATCATCTGCCTCCTCATGGCTGGTGACACGTGGACGGAGACCCTGGCGTATGTGCTGTTCTGGGGCACAGCTAGCTTCGTGACGGCCGGCGTCATCCTCTTCAACGGGCGGGAGTTTGTAGACGCGCCCAAGCTGGTCCAGAAGGAGAAGATGGACTGAATGTGTGCGTGTGGAAAGCAGCTACGCCCCACagacttctcctcttcctcttcatcccACTCTTCTTCATCATCGTACCCTCAGGATCAGCGGGCCTGGAGCCTGTACTGATTACTGAGCCAACGgcatgaggaagaggaggaggaggatggggtgaGAGAAAGGCCAGGTGTATGATGTAGGGCTGTGAAGCATACAGGGACTCGCTCTGCACTGGCCTGCTGCTGTCCACACCACTAAGCACATTATTTGGGCTGGGGAAGATCCCtaaccttgtccatagactgacTGTATAAGCTGAAAACGGTCTGATTTTATGATACAATACCCCACTACGGTAACACAGTTACCCTTCTGCACGGAATGCATATGAACGGGCACTGCTGTTGTTGCCATAGCAACCTTGCCAAGGGAACTACTTAAAAAAAATCTTGCTTTTTTGTTGATTTGTCACCTAGCTACATCATGTCATATTTGCTCTGTTGGTTGCCATATTGTTTCAGTGTCATTGCCCCTTAGTGGTCGATCTGAAGGTAGTGTCTTAGTGTGATAGCTGACCTATTGGGTGCCAGTGGCTGTCTGTCAGCCCAGCCCAAGCCATGATCCCAAAACTAGGTCACCAATAGTCATGGAGAGAATGTGCTAGCTGGTCAATGGTTGGTGAGGGAATGGTCTAGCTGGCCAATAGGCAGGAAGAGAACGTGCTAGCTGGTCAATGGTTGTTGAGAGAATGTTCTAGCTAGCCAATAGTTGGGGAGAAAATGGGCTGAACTGTTTCAATAGGGAACTTTAGTTATGGTGCCCCATCACCATTAATGCCATAACTGCCCATACTATTCTCGCTCACTGCACTTCTGAGTGCACAGAAACTAAGCGTTTCACATGAGGATTGCTCTGAGATGTGACGAGAGGGATGTTTGTCTGTGTGGTATGTCTGGCTGTCAAGTCTTCCCAGGTATGGAAAGCTTCATGAAACAGCTGGAAAGACAAATCCTCATTAGTTTCTAACAACCAAAAGGTGTGAGAGGGCATCAAACTATATACTATAGTGAGTAGGATCTGTCTTTGACCAGTAGACTGTGAGGCCCAGACCTAGGCTAATAATGAAGCATGGATTTaatggtccaatgcagccatttctATCTCAATATCaagtcatttctgggtaacaattaagtaacttactgttattgttttcaattaaaatggttgtCTAGGATTGTCTGGGAATGGTTTTgggggagggggaaactgaactagctgttattggcagagatgttTGGAAATCTTTGTTATTCATCTTTTAACTAATTTTTACtgtctggtgatgtcaccagcaggtcaaaactccatcccaccaaaacagcctgacatttcaggcggtcttttcaataattcaataataataattttcacagtattatttccAACCTggaaatgtacact

Function

NR:

description
phosphatidylinositide phosphatase SAC1-A-like

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K21797 SAC1, SACM1L; phosphatidylinositol 4-phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021626149.2 True 3294 mRNA 0.48 18 26629576 26640996

Neighbor

gene id symbol gene type direction distance location
ggctb ggct coding downstream 40931 26585791 ~ 26588645 (-)
LOC118938772 cg024 coding downstream 50239 26576953 ~ 26579337 (-)
LOC110539162 LOC106605511 coding downstream 70442 26550832 ~ 26559134 (-)
LOC110539098 LOC106605503 coding downstream 839317 25669026 ~ 25790259 (-)
si:ch211-198c19.1 LOC106605502 coding downstream 1168694 25459554 ~ 25460882 (-)
LOC110539285 LOC106579350 coding upstream 962 26641958 ~ 26675649 (-)
lars2 lars2 coding upstream 42362 26683358 ~ 26726160 (-)
LOC110485094 LOC106605523 coding upstream 119389 26760385 ~ 26762634 (-)
LOC110485095 LOC106579313 coding upstream 140800 26781796 ~ 26786984 (-)
LOC110534567 cf113 coding upstream 153153 26794149 ~ 26814659 (-)
G127074 NA non-coding downstream 973 26626693 ~ 26628603 (-)
G127080 NA non-coding downstream 2957 26626166 ~ 26626619 (-)
G127085 NA non-coding downstream 65244 26564092 ~ 26564332 (-)
G127084 NA non-coding downstream 66848 26562396 ~ 26562728 (-)
G127051 NA non-coding downstream 82074 26543904 ~ 26547502 (-)
G127131 NA non-coding upstream 43172 26684168 ~ 26684638 (-)
G127268 NA non-coding upstream 95845 26736841 ~ 26737779 (-)
G127307 NA non-coding upstream 179770 26820766 ~ 26822599 (-)
G127313 NA non-coding upstream 192176 26833172 ~ 26854454 (-)
G127083 NA other downstream 67449 26561614 ~ 26562127 (-)
G125305 NA other downstream 1852949 24775220 ~ 24776627 (-)
LOC110538887 LOC106605647 other downstream 2095047 24531424 ~ 24540898 (-)
G125043 NA other downstream 2304740 24324580 ~ 24324836 (-)
G125003 NA other downstream 2359440 24269226 ~ 24270136 (-)
LOC110485245 ubr5 other upstream 630264 27231538 ~ 27278158 (-)
G129250 NA other upstream 1125161 27766157 ~ 27766532 (-)
LOC110485663 LOC106579570 other upstream 1455686 27933389 ~ 28149986 (-)
G129582 NA other upstream 1669323 28310319 ~ 28310732 (-)

Expression


Co-expression Network