Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110539285 |
| gene name | LOC106579350 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 26641958 ~ 26675649 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| LIM domain-containing protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036943662.1 | False | 4036 | mRNA | 0.46 | 8 | 26641958 | 26675649 |
| TU146641 | False | 1640 | lncRNA | 0.40 | 3 | 26642188 | 26648907 |
| TU146643 | True | 383 | TUCP | 0.54 | 5 | 26651376 | 26663014 |
26,616,000
26,620,000
26,624,000
26,628,000
26,632,000
26,636,000
26,640,000
26,644,000
26,648,000
26,652,000
26,656,000
26,660,000
26,664,000
26,668,000
26,672,000
26,676,000
26,680,000
26,684,000
NC_048566.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110539269 | LOC106579366 | coding | downstream | 962 | 26629576 ~ 26640996 (-) |
| ggctb | ggct | coding | downstream | 53313 | 26585791 ~ 26588645 (-) |
| LOC118938772 | cg024 | coding | downstream | 62621 | 26576953 ~ 26579337 (-) |
| LOC110539162 | LOC106605511 | coding | downstream | 82824 | 26550832 ~ 26559134 (-) |
| LOC110539098 | LOC106605503 | coding | downstream | 851699 | 25669026 ~ 25790259 (-) |
| lars2 | lars2 | coding | upstream | 7709 | 26683358 ~ 26726160 (-) |
| LOC110485094 | LOC106605523 | coding | upstream | 84736 | 26760385 ~ 26762634 (-) |
| LOC110485095 | LOC106579313 | coding | upstream | 106147 | 26781796 ~ 26786984 (-) |
| LOC110534567 | cf113 | coding | upstream | 118500 | 26794149 ~ 26814659 (-) |
| LOC110485107 | LOC106605539 | coding | upstream | 159015 | 26834664 ~ 26839122 (-) |
| G127074 | NA | non-coding | downstream | 13355 | 26626693 ~ 26628603 (-) |
| G127080 | NA | non-coding | downstream | 15339 | 26626166 ~ 26626619 (-) |
| G127085 | NA | non-coding | downstream | 77626 | 26564092 ~ 26564332 (-) |
| G127084 | NA | non-coding | downstream | 79230 | 26562396 ~ 26562728 (-) |
| G127051 | NA | non-coding | downstream | 94456 | 26543904 ~ 26547502 (-) |
| G127131 | NA | non-coding | upstream | 8519 | 26684168 ~ 26684638 (-) |
| G127268 | NA | non-coding | upstream | 61192 | 26736841 ~ 26737779 (-) |
| G127307 | NA | non-coding | upstream | 145117 | 26820766 ~ 26822599 (-) |
| G127313 | NA | non-coding | upstream | 157523 | 26833172 ~ 26854454 (-) |
| G127342 | NA | non-coding | upstream | 202801 | 26878450 ~ 26914822 (-) |
| G127083 | NA | other | downstream | 79831 | 26561614 ~ 26562127 (-) |
| G125305 | NA | other | downstream | 1865331 | 24775220 ~ 24776627 (-) |
| LOC110538887 | LOC106605647 | other | downstream | 2107429 | 24531424 ~ 24540898 (-) |
| G125043 | NA | other | downstream | 2317122 | 24324580 ~ 24324836 (-) |
| G125003 | NA | other | downstream | 2371822 | 24269226 ~ 24270136 (-) |
| LOC110485245 | ubr5 | other | upstream | 595611 | 27231538 ~ 27278158 (-) |
| G129250 | NA | other | upstream | 1090508 | 27766157 ~ 27766532 (-) |
| LOC110485663 | LOC106579570 | other | upstream | 1421033 | 27933389 ~ 28149986 (-) |
| G129582 | NA | other | upstream | 1634670 | 28310319 ~ 28310732 (-) |
| LOC110534614 | LOC106605399 | other | upstream | 1801537 | 28475823 ~ 28533709 (-) |
| LOC110539285 | LOC106579350 | other | upstream | 2469 | 26641958 ~ 26675649 (-) |
