LOC110539285 (LOC106579350)


Basic Information

Item Value
gene id LOC110539285
gene name LOC106579350
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26641958 ~ 26675649 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943662.1
GCGCTCCCTAATCCCACGGTCGACTCCACACTATCCACATTCGGAGCAAGACGTTTGCTTTAGTTCAGTATATTTTGCCGTACGCACTTGTAATAACTGTTCAATTATAGGCGAGCTAAATTAGCGTTGTGATAGGACCCCACTGGAATTTGTTTAGCAACTCGCGGGAAAAGTTTGGAACGCATGCACTCGCTACAAAGTTGCAAACAACGTTTTTTTAATGGATGCTTCGGCTGTGAAGTTCGGAAAGGGGGCGCAGGCTGGGGTCGTAGGCTATCTGATCTGACTTTATAAACAGACAGTATCCTGTTGCGAGCAGAGTCAGCTGGCTCACGGAGGAGAGAACGGAGCTTCTTCTCGCTATTATTCGGATCTTTGTCCATTCCGGAGTAGGCCTAGGCATAATTGCTTCCGCAGGATAGCTAACACATTACGGGAGAAACTAATTCAACTTCAGGTCGGGATCTTCACGTCAGAATACCGCTTGACAGTGCTCTCTCTCCGCTGCCTGGACTGGACAGAAGCTTGGTAATCTTTTACTTCGAGAGTGACGAGGGTTTGGATTTAATCCTTTCGTTTCAATTGTTTACTGTGATTAACATTGTTTTTATTGGCTAgcctactttttattttattttggacaGAACTTTTTTTGTGACAGTTGTGGCTCGAATCTTAAATCAGATCATAGTTTATACACATTTTGTAATTCACTTCAAGATGGATAAATACGACGATTTGGATCTTGAGGCAAGTAAATTTTTAGAAGACCTCAATATGTATGAGGCATCTAGGGACGGGTTGTTCCGAATGAAGAGGGATGCAGGGAACAACTCCGACTTTGAAGAAACCAGGAGGGTTTTTGCCTCCAAAATGACAAAAATCCACATACAGAAACAGCAAGAGGAAATAGCCAAAAACAATTTGGCAGTGAGAATGAACGGGGGTCAAAACAGAGCGGCAGACAGCACGTTTTACACCAAAGACAGGCCGCCTATCAATAGCTACAGACAGGCAGGAGAAGCTGCGGCCAAGCCTCCCATACTCTCTGGCCCTTTGCCAGGCACCGCCAGTGGCGCGAGTCAGTACGCTCCCTATGACGCTCTGAAACACCATTCACCCAGTCAACAGCCATACAGCTACGGAAACAATTACGATAACAAGGACCGTTTTGAGCCGCATTCTTACCACCACGCCTTGAGTCCCACCAGCCCAGGGAATGCACCCACACATGCTTCTGGTCACCCTGCCAGTCCCTCTGTCACTTGGGCCTCTTACTCTTCCAGCCCTGGTGGATCATCAGGGCTTATGTGCAGCCCACCTCAGCAGCCCCCACACcactcaccatctccctccttctccgaCAGCCTACCATCTCCGAGCCCCACTAGACTGCACCAGAGCAAGGCTGCCACTCTACTAGTGCGGCAGAGACCCCCCATGGTGGCTGGGGCTGCAGCAGACTGGATGCGGAGCTTGGGGAACCCAGAGCTGATTGCACCGCTCCCTCTGAGTGCCTTCACTGGCGGAGCTGACCTGTACCAGCATCTGTCTCCACAACCTGCCCCTGTTACACCGCCAACAGGCCCTTACTCAGCAGCACCCTGCATGGCCCCAAGACCAACCGCCAACCAGGGAAATCTACGCCAGAACGGGCTCTCTCAGAGTCCTGTGGTTCTCACCCCCAGCCCCACCCCTGCTCAAGGGGCTGTCCCAACCCCACCTGTACACCCATCTGAGACAGCCCAGCCCAAAGTCACTACTGGAGCTTACttccctgcctctgcctctccctctggaACCAGTGTCTCTAGAAGCTTTGGCCAGGGTCAAGGTATAGGCCAGGCCCAGGGCAGGCAAGTGGCCATGGGGGTGGATGTGCCCTCTGGCCTAGACAGCCAGCTGTCCTCTGGTGGTGAGGCTTGCCAGCTCCAACACCAGCCCCAGTCTCTCAAACTGCCCTGCCAGACTCTCCATGTCCAGCCAGAGCAGGGGCCGTCTGCCGCCGAGATCAAATTAGAAGCCCTGACCAAGCGTCTGGAGAAGGAGATGGACGCCCAGCCAAAGGCAGACTACTTCGggagCTGTGTGAAGTGTAACAAGGCGGTGTACGGAGCCACTGCTGCCTGCCAGGCTATGGGAAGCCTCTATCATGATGTCTGCTTCACCTGCAGCGCCTGCAGCAGAAGGCTACGGGGGAAAGCATTTTACTACGTCGGTGGGAAGGTGTTCTGTGAAGAGGACTTTCTGTATTCTGGATTCCAGCAGTCTGCAGACAAATGTAACGCATGCGGACATCTGATCATGGATAtgATCCTGCAGGCCCTTGGGAAGTCTTACCACCCTGGCTGTTTCCGTTGTGTCATCTGTAACGACAGTCTGGACGGAGTGCCCTTCACTGTGGACACAGAGAACAAGATTTACTGTGTCAAAGACTATCACAGGGTCTTGGCCCCCAAATGTGCAGCATGTAACCAGCCCATTCTGCCTTCAGAGGGCTCTGATGAAACCATCCGAGTGGTATCCATGGATAAAGACTACCACGTGGAGTGCTATCACTGTGAAGACTGTCAGATGGAGCTGAACGACGAGGAGGGGCACCGCTGTTACCCGCTGGACGGGCACCTCCTCTGCCACACCTGCCACCTGAAGCACATCGAGCCGGGCTGCGCCTCACCCACCGCTGCCTCCTACCAGCACCAGTTCTAGTTTTAGGATCTAGTGCATGGTGCCACCAGGTGGCCCTCTGAACTAACTGCCAATAACCAACCACAACCAATCTGCCCAAAAAAATGTCTATAATGGTTTGAATGATAATGTATGCCTTTACTGTACATCTCTGATGTAAGTGTGGTCCCTTTAGGGTTAATTGTgcgattggttgattgattgattgattgattgcgtGTGTGCAAGTGTGGGAGTGTGCTTGTAAATGAGATAGAcctgttattatttttttaatgaaaaaatCTATTTCTCTATCGAAGACATGGTTTATTAGTTGTAAAGTGTTGAACTTTCATCTGACACGAATGTTAATACTCtggaaatatttttttaatatatgtatatttaaaTACCAATGCCAAAGCACAGTTGTATTTTAATGACTGATACCAAAACAATTAAGCATGGAATTATAACAATACAATTTATAGTCTCAATTAGGTGCATTGTGTGTAAATAAATATGCATTTCATGTGCTTGTGTAAATATCCTGATCTTCATTTTCCCCTTTGTGTGCCACCAATTTCAGTTGCTCAGTTTGAATCAATGTGTTTGTAGATACTGATACAGTAGAAATAGTTTGCATAGCTGAATAGAGCAATTGCCCAGTTTTgtagtatgtctctgtgtgtgggttaTGAAGGTGCGTTTCCATGAATTTTTTTACTAGAAATACCTTCATTACTCATTTTAGCTAATATGCAGGTATTGTCTAGAAAGTCAAAGTTAGCAATTCAATACACAAACTGTACATGGTCCTTTTATTGTTCCATGTCAGTGGGAATCATGTTGAATTAGTATTACATTTCTATTGTTAAATGAACCCTGGATGTTCTGTTCCCAACACTGATACTGGGCtaatattcccactgtcctctgTCACACACCACTCATAGAATATACTTTCTATTGCATTATTAACCCAAATATAGCAGTTATGTTATGTCTGGGTCAACAATGTTTCCAAAATCCCTGCACACAATTACCACCCAAGAAAATAAATAACTAGGTTTATTCTATTCCAATAAACCCCCAAATTCAATATCTATGAACAACCCCTGATAACCCATTTTGGTTTGTAGTGACAAAAAAAGTGACTAAAAGATTAAGTTTCAGTAGGCTTAGTCTATCATATTTCATGATTTATTATATTTATCCTTGTTTGGAAAAAATCCCATGGTCATTAATCATATGTTCAAAGTATGTGACGTATGTGAAGTATTCCAGTCGTTTACTGTATTTGAAAATGATTTGAGAGATGTCCATATCTAATATTTAACTAAAATAAATGCATTGTAATAGATTG
>TU146641
gggtaaaggaggagagaatggGCAAAGGAGGAGAGAATGGGCAAAGGAGGAGAGAATGGGCAAAGGAGGAGAGAATGGGCAATGGGGGAACTGGTGAAAGAGAGGAAGTGTTAGAAGTATTAACCTTAAAAAAGAGTAACAGATACTTGTGCTGTATCTATATCAAGCCTGGTGGTCTTTCTGTAGGGAACCAGTATAAACCAGACATATATTTTCAGTCTGAAACTGTTATTATTTCTACCAATTGATGTATCTTCTTTGTTCTCTCGTTTTCTCAGGGTCTTGGCCCCCAAATGTGCAGCATGTAACCAGCCCATTCTGCCTTCAGAGGGCTCTGATGAAACCATCCGAGTGGTATCCATGGATAAAGACTACCACGTGGAGTGCTATCACTGTGAAGACTGTCAGATGGAGCTGAACGACGAGGAGGGGCACCGCTGTTACCCGCTGGACGGGCACCTCCTCTGCCACACCTGCCACCTGAAGCACATCGAGCCGGGCTGCGCCTCACCCACCGCTGCCTCCTACCAGCACCAGTTCTAGTTTTAGGATCTAGTGCATGGTGCCACCAGGTGGCCCTCTGAACTAACTGCCAATAACCAACCACAACCAATCTGCCCAAAAAAATGTCTATAATGGTTTGAATGATAATGTATGCCTTTACTGTACATCTCTGATGTAAGTGTGGTCCCTTTAGGGTTAATTGTgcgattggttgattgattgattgattgattgcgtGTGTGCAAGTGTGGGAGTGTGCTTGTAAATGAGATAGAcctgttattatttttttaatgaaaaaatCTATTTCTCTATCGAAGACATGGTTTATTAGTTGTAAAGTGTTGAACTTTCATCTGACACGAATGTTAATACTCtggaaatatttttttaatatatgtatatttaaaTACCAATGCCAAAGCACAGTTGTATTTTAATGACTGATACCAAAACAATTAAGCATGGAATTATAACAATACAATTTATAGTCTCAATTAGGTGCATTGTGTGTAAATAAATATGCATTTCATGTGCTTGTGTAAATATCCTGATCTTCATTTTCCCCTTTGTGTGCCACCAATTTCAGTTGCTCAGTTTGAATCAATGTGTTTGTAGATACTGATACAGTAGAAATAGTTTGCATAGCTGAATAGAGCAATTGCCCAGTTTTgtagtatgtctctgtgtgtgggttaTGAAGGTGCGTTTCCATGAATTTTTTTACTAGAAATACCTTCATTACTCATTTTAGCTAATATGCAGGTATTGTCTAGAAAGTCAAAGTTAGCAATTCAATACACAAACTGTACATGGTCCTTTTATTGTTCCATGTCAGTGGGAATCATGTTGAATTAGTATTACATTTCTATTGTTAAATGAACCCTGGATGTTCTGTTCCCAACACTGATACTGGGCtaatattcccactgtcctctgTCACACACCACTCATAGAATATACTTTCTATTGCATTATTAACCCAAATATAGCAGTTATGTTATGTCTGGGTCAACAATGTTTCCAAAATCCCTGCACACAATTACCACCCAAGAAAATAAATAACTAGGTTTATTCTATTCCAATAAACCCCCAAATTCAATATCTATGAACAACCCCTGATAACCCATTTTGGT
>TU146643
aaggagactgcgtggcaggctgaccacctgttacgcgagtgcagcaaggagccaagggagCTGTGTGAAGTGTAACAAGGCGGTGTACGGAGCCACTGCTGCCTGCCAGGCTATGGGAAGCCTCTATCATGATGTCTGCTTCACCTGCAGCGCCTGCAGCAGAAGGCTACGGGGGAAAGCATTTTACTACGTCGGTGGGAAGGTGTTCTGTGAAGAGGACTTTCTGTATTCTGGATTCCAGCAGTCTGCAGACAAATGTAACGCATGCGGACATCTGATCATGGATAtgATCCTGCAGGCCCTTGGGAAGTCTTACCACCCTGGCTGTTTCCGTTGTGTCATCTGTAACGACAGTCTGGACGGAGTGCCCTTCACTGTGGACA

Function

NR:

description
LIM domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943662.1 False 4036 mRNA 0.46 8 26641958 26675649
TU146641 False 1640 lncRNA 0.40 3 26642188 26648907
TU146643 True 383 TUCP 0.54 5 26651376 26663014

Neighbor

gene id symbol gene type direction distance location
LOC110539269 LOC106579366 coding downstream 962 26629576 ~ 26640996 (-)
ggctb ggct coding downstream 53313 26585791 ~ 26588645 (-)
LOC118938772 cg024 coding downstream 62621 26576953 ~ 26579337 (-)
LOC110539162 LOC106605511 coding downstream 82824 26550832 ~ 26559134 (-)
LOC110539098 LOC106605503 coding downstream 851699 25669026 ~ 25790259 (-)
lars2 lars2 coding upstream 7709 26683358 ~ 26726160 (-)
LOC110485094 LOC106605523 coding upstream 84736 26760385 ~ 26762634 (-)
LOC110485095 LOC106579313 coding upstream 106147 26781796 ~ 26786984 (-)
LOC110534567 cf113 coding upstream 118500 26794149 ~ 26814659 (-)
LOC110485107 LOC106605539 coding upstream 159015 26834664 ~ 26839122 (-)
G127074 NA non-coding downstream 13355 26626693 ~ 26628603 (-)
G127080 NA non-coding downstream 15339 26626166 ~ 26626619 (-)
G127085 NA non-coding downstream 77626 26564092 ~ 26564332 (-)
G127084 NA non-coding downstream 79230 26562396 ~ 26562728 (-)
G127051 NA non-coding downstream 94456 26543904 ~ 26547502 (-)
G127131 NA non-coding upstream 8519 26684168 ~ 26684638 (-)
G127268 NA non-coding upstream 61192 26736841 ~ 26737779 (-)
G127307 NA non-coding upstream 145117 26820766 ~ 26822599 (-)
G127313 NA non-coding upstream 157523 26833172 ~ 26854454 (-)
G127342 NA non-coding upstream 202801 26878450 ~ 26914822 (-)
G127083 NA other downstream 79831 26561614 ~ 26562127 (-)
G125305 NA other downstream 1865331 24775220 ~ 24776627 (-)
LOC110538887 LOC106605647 other downstream 2107429 24531424 ~ 24540898 (-)
G125043 NA other downstream 2317122 24324580 ~ 24324836 (-)
G125003 NA other downstream 2371822 24269226 ~ 24270136 (-)
LOC110485245 ubr5 other upstream 595611 27231538 ~ 27278158 (-)
G129250 NA other upstream 1090508 27766157 ~ 27766532 (-)
LOC110485663 LOC106579570 other upstream 1421033 27933389 ~ 28149986 (-)
G129582 NA other upstream 1634670 28310319 ~ 28310732 (-)
LOC110534614 LOC106605399 other upstream 1801537 28475823 ~ 28533709 (-)
LOC110539285 LOC106579350 other upstream 2469 26641958 ~ 26675649 (-)

Expression


Co-expression Network