LOC110485091 (LOC106605521)


Basic Information

Item Value
gene id LOC110485091
gene name LOC106605521
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26738924 ~ 26741780 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943668.1
AGAGTACCAGGGTCCTCGCAGCACACCACAGCCTATCTCTTTCATGCAAAGTAACGCCCAGTAGCAGTTTGGCAAGACGCCAGTTACTTTGGGAACCAAATCTAGGGCGGGGAGCGCGCACGGCGCGTGTGACGGGCAGCTGACGTTTCCAACTGTCCTCTCCCGCAACGGTAGATGCACACTGTGGATGTTTGTATAAGCGCTGGAGACGGCCGTTTTCGGCATTTTATTAACGACGGCCACGCATCGTCAGTTGCCTTGCATCCCCACGGAACATCATGCGAGTAGGAGCGACGCACCCAATGCCATGCTGAGCAACTCCCCGACTTTTCTGCTGGCTCTGACCACGGTAGCCGGACTACTCCAGCGGTGCCACGGCTGGAGCGACGAGGACCTCCTGTTACCCCCCATCAACTCCACCAACAGATTCTTGGCCAACTTGGAGGTGGACGTGCACTACTCGAAGAGATCCATGGAGGAGAGCGAAGCCTCCTCGTCAGACACTTCGTTACAGCCGTTGCCACATTGCAACGTCAGCGTGCAGAGACTTTTCCCCACCTCGCTGATGGCTCGTTGGGACAGCAACTTCGGTTTCCAGTGCGATGTGTTTATATATACCGCCAATAACAATGGAAGGGCTTTTTTCTCTGCTGCTATCAACAGAGCCATCTCACCTGTTCTCATCGAACACCTCGGAGTCACCGGCGGCCAGCAGGAGTTTAGACTGTGTGTTGGATGTGGCATGTCACGATACCGGCGATTCGGCAAGTCAAAGGCTCAGCAGACGGGGGATCCCATCAATTTCTGCTGTGTTGACTTCAGCCTTGACGAACTAAATGGGGACAAAAGTTGGAGATTGAACCGTAAACCCATCGAGTCAACTCTTGTGGCTTGTTTCATGACTCTAGTGATAATAGTGTGGAGTGTTGCTGCCCTCATATGGCCGGTGCCTATTATTGCAGGATTTCTGCCCAACGGAATGGAACAGAGACGGCCGAGATAAAGAATGATCAAATTCTGGAGATAAGCCCCCAAGCCAATAGGCTAAAAATACTGTAGAATACATATTTCAACGGTTTTTTTCACATTCTACCCGTATAAAAGAATGTCCGTTTCCAATTTTACCGTTTAGAATGAAAGAGTGTATTTTTGGTTTTGGTCTATTTCCTATTGATAGGCCTTCACTATAAGAAGACCAAAAGTTTTAAAGATAGGTTGTGGTATTGTAAATCTAGCCTCTGTATTACATTGTCTATAATAGGTGCATATGTAGAGTGTGTTAACATTTCACTGTAAACGGTGTTTGTATGGTTTTAAATCTTTGTAGGATTATTGCCTATGGCCCtggcagtggtgtagtggtgcccgAATAAGTGGGTATACTCTAATTTTGCCAAAAATGTCCCAAACGGTCCAGCCCGGCAAAGGAAAGATGCCCTGTGTGAAATATTATATGAGAAACAGTGACATACATTCTGTATTACCTAAAATTATATATTccatattggtctttcacagtcagaccaacccaagctgtactgtgcaagTAGGCTAATTGTAGACACACTATTGAAACAGATAAATTAGGCTGTCAACTGAGTCAGAAATTCAAAGGTTTCATATCTATTTATTTATATTCAGATGTTCACTCTCAAAGTCACAATTTGTTTTATAGAAAAACAACTAAattggatgttctatgtccatAACAATGCTTTCAAAGTCCATAACAATGTCCATAACAataccacatcaggagaccacttttgagctCTGGAAAATATCGAAGATAAACTATTTTTGTGTAGTTGCACTTTAATAATTCCAGTGTGAtggcacctagcactgttgtttgttAGTGGTATTTCTGTAGCACGTGAGATGgaatttgcaaaacaaatggccactggattaaTGCAAATAATCATCATATCATTCTGCCATtttttgggaaagcctttccatctaccagaagacggCTTATTGTTAGCATCACTATATTTTTCCTgttacttaattgtttgaaacctagATGTTTTACTCCGTATTATGAGGCATGCCTTAGCATTTCTTCAATGGAGCCAATAGTCAAAATCCCACCATAGAAAGGAGGAGGCAATTATTTGATAAAGACTTCCTCGTATGCATTATCCTGTTCTTTCAACTTTATTTCATTGTCTAGCAGCCAAATGCATTATCCTATTCATATTAGCAACTGATGAAGGTTGTTGTATCTTTAGATCTCCCATAGTATCTACATTTCGTATGGATATTTCAATCTCCATCCATGAAACCTCTCACAAATGcggtgcacattttagaatggtaTTTTCCTGCTAATTTCATTTTGGAACATTCCCGTGTAGGCCTACCGCCATGTGCCCATTGCTGCatctaaaatgtgaagaaataatagtttatcaacatttaatTTAAGCATGAAGAAATACACGCAATGCCCACTGAAAACCTGTGCATACCCTCTGCTACACACACCACTGAAGCCTGCTATTTGTTGTGTTTATGTAGAGAGAAATTATAGTTTTCTCATGAACTTGAATGAAAAAGTGTGCTGTAATACGTGGTGGGTAGATCTTGTCAAGAATAAATGCATAAATGTCATAGGCCTACCTGAATTTATTTTGGATGTTGTATCAAATATTTTGACGTATAGGCAACCCCTCTCTGATATTGTTTAATATTATTTATGTTAGCTTTATCTATATAACACAATTAAATCTAAGCTGATaacatatttgtatttgtttgtatGAGATAACATgagtgaataaataaataaaatgtatttgttttaccAAA

Function

NR:

description
transmembrane protein 158-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943668.1 True 2820 mRNA 0.42 2 26738924 26741780

Neighbor

gene id symbol gene type direction distance location
trnar-acg-2 NA coding upstream 97685 26641167 ~ 26641239 (+)
LOC110539196 LOC106605517 coding upstream 125487 26596265 ~ 26613437 (+)
LOC110539212 LOC106605509 coding upstream 153483 26581768 ~ 26585441 (+)
LOC110539182 LOC106605509 coding upstream 157128 26579758 ~ 26581796 (+)
LOC110539173 LOC106605512 coding upstream 191421 26452681 ~ 26547503 (+)
LOC110485092 LOC106605522 coding downstream 5191 26746971 ~ 26765817 (+)
rwdd1 rwdd1 coding downstream 28684 26770464 ~ 26779479 (+)
LOC110485096 LOC106605526 coding downstream 71704 26813484 ~ 26823336 (+)
LOC110485145 LOC106579269 coding downstream 156149 26897929 ~ 26903411 (+)
LOC110533712 NA coding downstream 163121 26904901 ~ 26909167 (+)
G126748 NA non-coding upstream 77557 26660012 ~ 26661367 (+)
G126695 NA non-coding upstream 175582 26563047 ~ 26563342 (+)
G126694 NA non-coding upstream 176916 26561498 ~ 26562008 (+)
G126664 LOC106579390 non-coding upstream 180288 26558016 ~ 26558636 (+)
G126679 NA non-coding upstream 211888 26525778 ~ 26527036 (+)
G127165 LOC106605523 non-coding downstream 18662 26760442 ~ 26761528 (+)
G127188 NA non-coding downstream 50248 26792028 ~ 26792291 (+)
G127202 NA non-coding downstream 83532 26825312 ~ 26825904 (+)
G127209 NA non-coding downstream 86468 26828248 ~ 26828451 (+)
G127211 NA non-coding downstream 88415 26830195 ~ 26830696 (+)
G126727 LOC106581475 other upstream 110275 26626849 ~ 26628649 (+)
G126387 LOC105417071 other upstream 688820 26049850 ~ 26050104 (+)
G125934 NA other upstream 981071 25682880 ~ 25757853 (+)
LOC110534557 LOC106605501 other upstream 1356612 25377221 ~ 25396334 (+)
G124451 LOC106578403 other upstream 1865090 24873051 ~ 24873834 (+)
G127190 cf113 other downstream 52430 26794210 ~ 26795762 (+)
G127198 LOC106605538 other downstream 115918 26857698 ~ 26861242 (+)
LOC110485212 LOC106605536 other downstream 406396 27147880 ~ 27175747 (+)
G127644 LOC106605534 other downstream 448211 27189991 ~ 27190593 (+)
LOC110485466 LOC106605529 other downstream 560298 27288172 ~ 27303644 (+)

Expression

LOC110485091(LOC106605521) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
End of interactive chart.

LOC110485091(LOC106605521) Expression in each Bioproject

Bar chart with 19 bars.
LOC110485091(LOC106605521) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
End of interactive chart.

Co-expression Network