LOC110485092 (LOC106605522)


Basic Information

Item Value
gene id LOC110485092
gene name LOC106605522
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26746971 ~ 26765817 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556142.2
CAGGAAAGCAAATGTAGGTGTAACCCATTTTCCTCAAAGCGAAAGAACTACACGGAGGTCCAAAGCCGTAGTCGCGATTTGTGCCAATTTTTGTTCAGTTATATAGCTTATCGTTTGAGATACCGACGCTGAAAATAAAGGCATGACTTTATCAACGGTCGGCTGGGCTCTGCAGCTTTTGGGGATCGCGTACGCCGTGTTCGTTCTATCAGAGGGTGTGACACTGACCCTCACCCCTGACCAGGGCACTACTCTCAACATCAGCCAGAGTTCAGAGCGCAGCAGGGGGTCAAAGTGTACGGTATGCACCGGTACAGGCTTGAAGAAGTCCTGCTCCAGGGCTGGAAGTGATTATGTGGTGCTGCTGACAGACCCCAAAGTTGCTGTGAACATGGTGTTCACCTGCACCAAACCAGAGGAAGTCTTTACTGTGGAGGTGATCAGGGAAATAGATTGTACCACAAAGTCCTGTAATGGAGACATCACCCCCAGTGAGTCCAGAACCGGAACGCTTCCACTCCAGAACTTCAACCGTACCTTTATCTGGAACCTGAAGGCCCCGGTTCCACGGGCGTTCCATTTGGACTTCACCCAGATGGGGATGAGACAGATCCTGCCCTCTGAGAGATGTCCAGACCAGCACACGTATACCCTGCTAGCCCTCCAGAGGACAGGGGAGGCTGCCATCGGGACGTACTGCAGGAACGGCAGCGTCTCTGGGGCTCAGGTCTTGAACCAGGGCAGGTTCTCTCTGGAGGTCACTGGAGGACGGGAACTGAACCCCACCATGTTCAACGTGTCTGTTGGAGAGGAAATCAAATCACTTGCTGTCCTCAAAGTGACTTTACCGGAAGGGAAGTCGTCTTTGGAGTTGCTCTCTCCAAACTACCCGAATAGTTTCCCTGACGATGACCTGATGGAGTGGAAGTTTGTGGTCCCTCCCAAACACAACGCTACGGTTGTCTTCCTGGGTCAGACCCAGCCGCAGTGCCTGAAGAAGGAGCCGGCTGTGGAGTATCACCACGGTAACGGACGGTTCGCGGTGGTGAAGAAGCTGTCGGACCCCCAGCCGGCCCAACGTCGGGACTCCTTCTCCCTGATCCTAAGGAACTGTGAGATGAACAGGATCGGGGACGGCTCCACTGGTCTCTCCCTCCACTTCAAGGTTTCAGCCAAGAGGAGGAGTCTTCCAGTGTTGTGCAACGTGGACCTGAGGAAAGAGCGGGGGCTTTCCCTCCATATTGAGAAGACTAACCTCATGTCTgactgtgagctgaagctgaactCTGTCATCCAGAAGAAAATCACTGTTCCCTCAGGGAAGATCTCTCAGCTATCCTTCCAGGACTGCCCATGTCAGGAGCTGCTACTGACCGCCATCAGAATCATAGaGTGCCGTCAGTGGAGGGGCTGCCAAGCAGCAGCAGCCTCTGTCCCTCTGACGGTGCCCGTCCTGGAGAGGTGTCTTCCCGCCCCCCTGGGCAGTGTCACCTGGATCCTCCGTCCCCCTCAGCATGGCACGGTAGAGCTCCTGCCCACTACTGGTAACCTGAGGCAGTCCCTGCCAGAACAACCCTGCAACGGCTCTGTCACTCTCACCGTGGCCGAGGACGATGACGGCACCACCGTGGGTCAGTTCTGCCCTCAGGGAGCCATACACAAAGTCCAGGTCCACACCAACGTGTCCATCACAGCTTCAGCCTCGACcatgggagggaaagagaggtggcCATTCTCACATCCTTTACTCAACATCTCCTTCACCAGGGAGATTGCAGagagatacatctTCACGGTATACCCAATGACAGGAGTACCAACTCTCCTGGCCACCCCTAGTTGGCCTGTGGGAATGAAGTCCTACTCCACTGTGTCCTGGATCGTCAATGTCCCCTCCAAGCTGGAAGCCCACCTCATGTTCGACAACATCAGCCAGCCCAAGTGCAGCAACCGCCACACGGGCATCAGggtGCAGATCCTGGGCTCCCTGGAGGAGATGTACAGCCGGCGGGAGGACGAGGAGGCAGGAAGGAAGATCACTGTCTCAGAGAGCTTCTACCTCAACATGTCCAACTGTATGCCTGAGAGAGGAGACTTCAGCATGCTCACACAGATCACACTGCACAAGGATAAGAACCTGCTTCTGACCAGCATTCTGAGTGCGGTGGCAGCTCTGCTGGTTCTCATGGTGGTTGTGTTGGCTGTGGTTTGTGTGGTGATCAAAAAGAAGAAAAGGCAGCTGTCTCACCAAGTGTCCACCTACAACCCCAACGGTACCAGCTTCCTGCCAGGGCACAACGGGAGTTTCCCCAAATCACGAAAAGACAACGAGTCCCACATCTACGCCTCGATCGAGGACACACTTGTATACAGCCATCTCCTGCGAGATGGGGCAGAGATGGGTGTCTATGGTGACCCGGCTGTGGATGTGTACCAGAGCTTTACTGGGCCCACAGAGACTAAGCCGCACTCTCTGGGGACAGTCTCTGAACATCCAGAGGTGGGCATCTACCAGCCTTTTGTGCCCCCATCCCATTTTGCCCCACCCGTCCCCAATAGACCCTTAAGTCAAGCCCAGCAGCCTATGGTGGACAATGAGCTGTACGGCTCCAGAAGCAATGGTGACACCTCTGCACAGTCTCAACCGAACAATATGAACACAGAGCAGGCTCCAACGGTGGAGCCATGACTGAAAGGGAGTGAACTGTAGGTTGGGGGTATATGCCAAGAACAGTACCATAGCCCTTCTATTCATAGcatgcacagtaccagtcaaaagtttggacacacctactcaatcaaaggtttttctttatttttactattttctacattgtataataatagtgaagaca

Function

NR:

description
CUB domain-containing protein 1-like

GO: NA

KEGG:

id description
K06732 CDCP1, CD318; CUB domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556142.2 True 2855 mRNA 0.54 10 26746971 26765817

Neighbor

gene id symbol gene type direction distance location
LOC110485091 LOC106605521 coding upstream 5191 26738924 ~ 26741780 (+)
trnar-acg-2 NA coding upstream 105732 26641167 ~ 26641239 (+)
LOC110539196 LOC106605517 coding upstream 133534 26596265 ~ 26613437 (+)
LOC110539212 LOC106605509 coding upstream 161530 26581768 ~ 26585441 (+)
LOC110539182 LOC106605509 coding upstream 165175 26579758 ~ 26581796 (+)
rwdd1 rwdd1 coding downstream 4647 26770464 ~ 26779479 (+)
LOC110485096 LOC106605526 coding downstream 47667 26813484 ~ 26823336 (+)
LOC110485145 LOC106579269 coding downstream 132112 26897929 ~ 26903411 (+)
LOC110533712 NA coding downstream 139084 26904901 ~ 26909167 (+)
LOC110485187 LOC106605537 coding downstream 151578 26917395 ~ 26934478 (+)
G126748 NA non-coding upstream 85604 26660012 ~ 26661367 (+)
G126695 NA non-coding upstream 183629 26563047 ~ 26563342 (+)
G126694 NA non-coding upstream 184963 26561498 ~ 26562008 (+)
G126664 LOC106579390 non-coding upstream 188335 26558016 ~ 26558636 (+)
G126680 NA non-coding upstream 219969 26526699 ~ 26527002 (+)
G127188 NA non-coding downstream 26211 26792028 ~ 26792291 (+)
G127202 NA non-coding downstream 59495 26825312 ~ 26825904 (+)
G127209 NA non-coding downstream 62431 26828248 ~ 26828451 (+)
G127211 NA non-coding downstream 64378 26830195 ~ 26830696 (+)
G127216 NA non-coding downstream 68290 26834107 ~ 26855129 (+)
G126727 LOC106581475 other upstream 118322 26626849 ~ 26628649 (+)
G126387 LOC105417071 other upstream 696867 26049850 ~ 26050104 (+)
G125934 NA other upstream 989118 25682880 ~ 25757853 (+)
LOC110534557 LOC106605501 other upstream 1364659 25377221 ~ 25396334 (+)
G124451 LOC106578403 other upstream 1873137 24873051 ~ 24873834 (+)
G127190 cf113 other downstream 28393 26794210 ~ 26795762 (+)
G127198 LOC106605538 other downstream 91881 26857698 ~ 26861242 (+)
LOC110485212 LOC106605536 other downstream 382359 27147880 ~ 27175747 (+)
G127644 LOC106605534 other downstream 424174 27189991 ~ 27190593 (+)
LOC110485466 LOC106605529 other downstream 536261 27288172 ~ 27303644 (+)

Expression


Co-expression Network