LOC110485094 (LOC106605523)


Basic Information

Item Value
gene id LOC110485094
gene name LOC106605523
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26760385 ~ 26762634 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556152.2
AAAAAGAGCATGTGGAACAGGAAAAACACTTGCTAGCAGCTACTCAGCTAGTTAACTACAAAATGTTGCCTAACATAAAATCATTGAGGATGTTGCTTAACATGCGATTAAAAGAGGCTGTCGATGAGCTATTCCGGGCAGTTGAAACAACGATAGCAGAGTACCAGCAAGAATTTTGCCGTTCAAAAGAGGAGAAAGACCGAACGATAGCAGAGTACAAGGAAAAAGTGTCCCGTTCGGAAGAAGAGAATGCCCGGCTACAGAGGCTGCTGGATGTTGTTCTTAAACCAGAAATAAGGTTACAGAGACTTGAAGACCTCCAGcagctcactctctccatctctgaagAGGAGGTTCCCCTTGAGCAGCAGCACTGCAAGCAGGATTGTAGTCCCGGTCTGGGGCAGGAGGACCCTTCCCAGATTAAAGTGGAACAGGAGGACCTATGGGTCATCAGTCAGGGACGAGAGCAGCTTCAAGCAATGGATTATGATACTGATGATACGGATGATTCTGCTGATACAGAAGCCTTCATATCTACTGCCAGAGTAAAATGTGACTATAATCAGAACCCAAATCAGTCCTCACATTTTTACCAAATTTTAACCCAACGTGAAGAAAACACAGAGAGGGATGAGCTACCCAGCACCACAACGCAAATTGAAGAGATTAAAACGGAGTTCTTCAGTGACTCTCAGCCCGCCTCTGCAGTCAATTCAGACTGGTCTGAAACTCAGAGTGAGAGCGGTGAAAGTGTTGATCGGATGGAGAGTGAAGGACCTCCACTCAAGTCAAAGAGAACACAGACTAAAGCTGGACCAAGCTTCCATGTCTGTTGTCACATCTGAAATCCCCTATCTCCAGTAATGCTGTTCGTCATTGTAGAATATGTGCAAAACCTTATCACTAGTGATCTAGTGATTCATGCCCATAGACATGCACAGCTATCTCGGTGTGGTATCTGCGGAAGAACCTTTGAGTCTGTAGAAAGTTTTAAAGAACAACTACATTTTCATGTTGCAAGTACAGGATCACTTTCTTGTTACATCTGTGGTATTTCACAGAGGATGAGGAGGTTTTGCTGGAAGAGCAATCACAAACTGAAACTGGATCGCTGTCTTGTGTAAGAAACGTTTTGAAACTCGCCAGGGTCTGACATTGCATATCAGGACTCTTGAAGACTGCCCCGACCTGGGCCTATGACCCGCAGCCTGAGCCTGTCCTGCCTTTTCTAAGcagactttttttattttttaagttgTAAAAACAATGTGAACGTGAGGGAGGCGTAGCGCTATATTGTCGTAATCAAACTTGATTAGAACTCTACCGCAGTTTTTGCTGAAGAAATGACTGATAAAATGCTCCAGTTCCATATCCTAGTAAAGGAGGCCTGAGTGAGGCCCATGCGCGTCTGCTGAAGGTCTGTGTATActgaaatgcatttttttttttaaatatcaaatAAACTATTGAATGGA

Function

NR:

description
uncharacterized protein LOC110485094

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556152.2 True 1481 mRNA 0.44 2 26760385 26762634

Neighbor

gene id symbol gene type direction distance location
lars2 lars2 coding downstream 34225 26683358 ~ 26726160 (-)
LOC110539285 LOC106579350 coding downstream 84736 26641958 ~ 26675649 (-)
LOC110539269 LOC106579366 coding downstream 119389 26629576 ~ 26640996 (-)
ggctb ggct coding downstream 171740 26585791 ~ 26588645 (-)
LOC118938772 cg024 coding downstream 181048 26576953 ~ 26579337 (-)
LOC110485095 LOC106579313 coding upstream 19162 26781796 ~ 26786984 (-)
LOC110534567 cf113 coding upstream 31515 26794149 ~ 26814659 (-)
LOC110485107 LOC106605539 coding upstream 72030 26834664 ~ 26839122 (-)
LOC110485118 cndp1 coding upstream 87109 26849743 ~ 26858369 (-)
LOC110485134 LOC106605538 coding upstream 95777 26858411 ~ 26863425 (-)
G127268 NA non-coding downstream 22606 26736841 ~ 26737779 (-)
G127131 NA non-coding downstream 75747 26684168 ~ 26684638 (-)
G127074 NA non-coding downstream 131782 26626693 ~ 26628603 (-)
G127080 NA non-coding downstream 133766 26626166 ~ 26626619 (-)
G127307 NA non-coding upstream 58132 26820766 ~ 26822599 (-)
G127313 NA non-coding upstream 70538 26833172 ~ 26854454 (-)
G127342 NA non-coding upstream 115816 26878450 ~ 26914822 (-)
G127323 NA non-coding upstream 139389 26902023 ~ 26903399 (-)
G127372 NA non-coding upstream 172838 26935472 ~ 26935844 (-)
G127083 NA other downstream 198258 26561614 ~ 26562127 (-)
G125305 NA other downstream 1983758 24775220 ~ 24776627 (-)
LOC110538887 LOC106605647 other downstream 2225856 24531424 ~ 24540898 (-)
G125043 NA other downstream 2435549 24324580 ~ 24324836 (-)
LOC110485245 ubr5 other upstream 508626 27231538 ~ 27278158 (-)
G129250 NA other upstream 1003523 27766157 ~ 27766532 (-)
LOC110485663 LOC106579570 other upstream 1334048 27933389 ~ 28149986 (-)
G129582 NA other upstream 1547685 28310319 ~ 28310732 (-)
LOC110534614 LOC106605399 other upstream 1714552 28475823 ~ 28533709 (-)

Expression


Co-expression Network