rwdd1 (rwdd1)


Basic Information

Item Value
gene id rwdd1
gene name rwdd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26770464 ~ 26779479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160642.2
GAGCACGCACACGTCTGTGCCCGGTTGGTTAACTTTGCTAGCTCATTGATGGACCATAGTAGAAGAAAATGACAGATTACGCTGAGGAGCAGCGAAACGAGCTGGAAGCTATAGAGTCAATTTACCCGGACTCGTTTACAGTGCTATCAGAGGTGCCCACCAGCTTCACCATCACTGTGACATCGGACGCAGGGGAAAACGATGAAACGATTGAAGTGACTCTACAGTTCACCTATGTGGAGAAGTATCCCGATGAGGTGCCGCTGTGGGAGATATACTCCCAGGAGAACCTGGAGGATTCAGACGCAGAGGGCATCCTCACCTTACTGCAGCAGCAGGCTGAGGAAAACCTTGGAATGGTGATGATATTCACCCTAGTTACAGCAGTTCAGGACAAACTGAACGAATTAGTCGACGAGATAAAAaacagaagagaggaagagaagaggcgAAAAGAGGAGGCAGCGGAGGAGGCTGAGAAGGTGCTCTTCCAAGGAACAGTGGTCACCATCGAGAACTTCCTGTCATGGAAAGCCAAGTTTGAGCTGGAGATGGCTGAGTTGAGGAGGAAACGGCAGAAAGAGGAGGAACAACAGCAGGCTGGAAAGATTAAACTCACAGGAAAAAAGCTATTTGAGACCGATCACAATCTTGACACATCAGATATACAGTTCCTGGAAGATTCTGGAAACAGTGTTGAAGTGGACGAGTCCCTCTTCCAGGACCTTGAGGAACTTGACCTGGATGAAGACGACCCTGACTTTGACCCTCTGGCACTGGGCAGTGATGAGGACTGAACTAGGAAGAAGAGAAAGATGCCATGGGCATGTTCCAGGCAGACCtgttttcaaatactatttatGATCTTTAAAATACTTTGAGCATTTGCTCTAGCCTGCCTGGGGTGCCAGATGAGTGGGGATTGCAGTGTCTTGACTATTTTATTGGTTCCATTGCGCctggcaagctcaatcaagcccagaagaaagcatttgaaattatttgaaatagtatttgaaaccaGGTCCGGTCCCAGATCATCTTTATTGCAGTCACGTTGCGCTGCACAGATTTCAGATCCCCCAATGCCTGGAGAAGTGTTTTGCATCTCAGGAACGACATCAATGAGATATAGAATTCGTCTGAGATGCGCAGCACGACTAATATTTACGACTTTGAACGCAACCGATACTAACAGGAGGGGATATGAGGGGATCATCACAGGAAGGGGAGTCACAGTATCTGACCAAGCACAGAGAAGACAACCACATTTGTTCTaaacatgaactgtaactccagTTGACTGTAAACACAGAATCACCTCAAGGCATTTATAAACCCTTGTCAATGAGTTGATTCATACCCGGATGccattaaagatgcactatgcag

Function

symbol description
rwdd1 Predicted to be involved in cytoplasmic translation. Predicted to be part of polysome. Orthologous to human RWDD1 (RWD domain containing 1).

NR:

description
RWD domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160642.2 True 1392 mRNA 0.47 6 26770464 26779479

Neighbor

gene id symbol gene type direction distance location
LOC110485092 LOC106605522 coding upstream 4647 26746971 ~ 26765817 (+)
LOC110485091 LOC106605521 coding upstream 28684 26738924 ~ 26741780 (+)
trnar-acg-2 NA coding upstream 129225 26641167 ~ 26641239 (+)
LOC110539196 LOC106605517 coding upstream 157027 26596265 ~ 26613437 (+)
LOC110539212 LOC106605509 coding upstream 185023 26581768 ~ 26585441 (+)
LOC110485096 LOC106605526 coding downstream 34005 26813484 ~ 26823336 (+)
LOC110485145 LOC106579269 coding downstream 118450 26897929 ~ 26903411 (+)
LOC110533712 NA coding downstream 125422 26904901 ~ 26909167 (+)
LOC110485187 LOC106605537 coding downstream 137916 26917395 ~ 26934478 (+)
LOC110485212 LOC106605536 coding downstream 368401 27147880 ~ 27175747 (+)
G127165 LOC106605523 non-coding upstream 8936 26760442 ~ 26761528 (+)
G126748 NA non-coding upstream 109097 26660012 ~ 26661367 (+)
G126695 NA non-coding upstream 207122 26563047 ~ 26563342 (+)
G126694 NA non-coding upstream 208456 26561498 ~ 26562008 (+)
G126664 LOC106579390 non-coding upstream 211828 26558016 ~ 26558636 (+)
G127188 NA non-coding downstream 12549 26792028 ~ 26792291 (+)
G127202 NA non-coding downstream 45833 26825312 ~ 26825904 (+)
G127209 NA non-coding downstream 48769 26828248 ~ 26828451 (+)
G127211 NA non-coding downstream 50716 26830195 ~ 26830696 (+)
G127216 NA non-coding downstream 54628 26834107 ~ 26855129 (+)
G126727 LOC106581475 other upstream 141815 26626849 ~ 26628649 (+)
G126387 LOC105417071 other upstream 720360 26049850 ~ 26050104 (+)
G125934 NA other upstream 1012611 25682880 ~ 25757853 (+)
LOC110534557 LOC106605501 other upstream 1388152 25377221 ~ 25396334 (+)
G124451 LOC106578403 other upstream 1896630 24873051 ~ 24873834 (+)
G127190 cf113 other downstream 14731 26794210 ~ 26795762 (+)
G127198 LOC106605538 other downstream 78219 26857698 ~ 26861242 (+)
G127644 LOC106605534 other downstream 410512 27189991 ~ 27190593 (+)
LOC110485466 LOC106605529 other downstream 522599 27288172 ~ 27303644 (+)

Expression


Co-expression Network