LOC110485095 (LOC106579313)


Basic Information

Item Value
gene id LOC110485095
gene name LOC106579313
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26781796 ~ 26786984 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556158.2
TCCTCGAGCACGACACGAATAAAAAACCCAGCTGAAACGTGTGTTTGTCTTCCGCGTCTTCTATTTGGGACAGTAGGTGATATTCGGGTAGGCATTGGACACCGAGTGAATGTAACTTCGCTCTGCCCGCTATCCATCATAAAACCTTATTTTTAAGAATAGTTGTTAATTGACTGCAAAAAACTACCTGGGGCCAGGGATTTCATAGTAGCCAACACCGACTGTGGATTTTGTCACATTGGCATACAATGACAACTTCCATCCGTACAAAGACAGATCCTTTGGATTCCACTGATCCCCAGGTTCTGGACTATATGCTGGTTCCTCACCGGAACTTCAACCTGATCAATGGGGTCCACTCTCCCGACGAGGTCGACCAAATCCAGAACTGGGAGATCCGAGACTCCGACATATTCGCCGTCACTTATCCCAAGTCAGGGACGATCTGGATGCAGCAGATTCTGACTCTGATAGAAGCCAAAGGGGACGTCACTCCAAACACAGAGCATCTCAACGCGCAGCGCGTCCCATGGATCGAGCTGATTGGCAGTGAGAAGGAGTTTAACGCTACCCCTTCCCCCAGGCTACGGGTCACCCACCTGCAGTACAAGTTCATGCCTCTCGCCATCAGACAAAAGAGGGGAAAGGTGATCTATGTGGCCAGAAACCCTAAGGATGTTCTCGTGTCCTATTACCACTTCCACAAATATGCAGCCATGCTGGAGACACCGAAGGACTTCAATGATTTCTTTGAGAAATTCATGGAAGGGAAAGTTTTTGGGAACTGTTGGTTTGAGCACATCAAGACGTGGTACGCTAATAGAGACAACATGAACTTCCTGTACATCACATATGAAGAGATGATCAAGgaccTGCGCTCCATGGTGGAGAGGATGTGCAGGTTTCTAGGGAAGGATTTGACAGAGGAGCAGATGGCCAGTGTGGTGGAACACAGCACCTTTAGAACCATGAAACAGAACCCGCAGGCTAACTACAAGACGGTGCCCGACTCCCTGCTTGACCACAACAAGGGCACGTTTATGAGGAAAGGGACCATTGGGGACTGGAAGAACCATTTCACTGTTGCACAGAGCGAGAGATTTGACAGTGTCTTCCAGGAGAAGATGAAGGACCTGCCCCTCTCTTTTGCTTGGGACATCAATGACATCACTAGTGTCACGTGATGACATCCTAGTCACGTCTTGCAGGGATGTTTTTAATCCTTGGGCGGGCCCCCTAAGCATTTTTTCAGGTCACCTAAGTCCAAATAGTGTAAaaagaaaaaa
>XM_021556163.2
GTATTCCTCGAGCACGACACGAATAAAAAACCCAGCTGAAACGTGTGTTTGTCTTCCGCGTCTTCTATTTGGGACAGTAGGTGATATTCGGGTAGGCATTGGACACCGAGTGAATGTAACTTCGCTCTGCCCGCTATCCATCATAAAACCTTATTTTTAAGAATAGTTGTTAATTGACTGCAAAAAACTACCTGGGGCCAGGGATTTCATAGTAGCCAACACCGACTGTGGATTTTGTCACATTGGCATACAATGACAACTTCCATCCGTACAAAGACAGATCCTTTGGATTCCACTGATCCCCAGGTTCTGGACTATATGCTGGTTCCTCACCGGAACTTCAACCTGATCAATGGGGTCCACTCTCCCGACGAGGTCGACCAAATCCAGAACTGGGAGATCCGAGACTCCGACATATTCGCCGTCACTTATCCCAAGTCAGGGACGATCTGGATGCAGCAGATTCTGACTCTGATAGAAGCCAAAGGGGACGTCACTCCAAACACAGAGCATCTCAACGCGCAGCGCGTCCCATGGATCGAGCTGATTGGCAGTGAGAAGGAGTTTAACGCTACCCCTTCCCCCAGGCTACGGGTCACCCACCTGCAGTACAAGTTCATGCCTCTCGCCATCAGACAAAAGAGGGGAAAGGTGATCTATGTGGCCAGAAACCCTAAGGATGTTCTCGTGTCCTATTACCACTTCCACAAATATGCAGCCATGCTGGAGACACCGAAGGACTTCAATGATTTCTTTGAGAAATTCATGGAAGGGAAAGTTTTTGGGAACTGTTGGTTTGAGCACATCAAGACGTGGTACGCTAATAGAGACAACATGAACTTCCTGTACATCACATATGAAGAGATGATCAAGgaccTGCGCTCCATGGTGGAGAGGATGTGCAGGTTTCTAGGGAAGGATTTGACAGAGGAGCAGATGGCCAGTGTGGTGGAACACAGCACCTTTAGAACCATGAAACAGAACCCGCAGGCTAACTACAAGACGGTGCCCGACTCCCTGCTTGACCACAACAAGGGCACGTTTATGAGGAAAGGGCAATTctgccacttttcaacctcatattcatgaTCTCTGGAATCATACCtgtgtctacatatgtgaaaataGGACCATTGGGGACTGGAAGAACCATTTCACTGTTGCACAGAGCGAGAGATTTGACAGTGTCTTCCAGGAGAAGATGAAGGACCTGCCCCTCTCTTTTGCTTGGGACATCAATGACATCACTAGTGTCACGTGATGACATCCTAGTCACGTCTTGCAGGGATGTTTTTAATCCTTGGGCGGGCCCCCTAAGCATTTTTTCAGGTCACCTAAGTCCAAATAGTGTAAaaagaaaaaa
>XM_021556160.2
TGTATAGGCGGTCAGTATTCCTCGAGCACGACACGAATAAAAAACCCAGCTGAAACGTGTGTTTGTCTTCCGCGTCTTCTATTTGGGACAGTAGGTGATATTCGGATCCTTTGGATTCCACTGATCCCCAGGTTCTGGACTATATGCTGGTTCCTCACCGGAACTTCAACCTGATCAATGGGGTCCACTCTCCCGACGAGGTCGACCAAATCCAGAACTGGGAGATCCGAGACTCCGACATATTCGCCGTCACTTATCCCAAGTCAGGGACGATCTGGATGCAGCAGATTCTGACTCTGATAGAAGCCAAAGGGGACGTCACTCCAAACACAGAGCATCTCAACGCGCAGCGCGTCCCATGGATCGAGCTGATTGGCAGTGAGAAGGAGTTTAACGCTACCCCTTCCCCCAGGCTACGGGTCACCCACCTGCAGTACAAGTTCATGCCTCTCGCCATCAGACAAAAGAGGGGAAAGGTGATCTATGTGGCCAGAAACCCTAAGGATGTTCTCGTGTCCTATTACCACTTCCACAAATATGCAGCCATGCTGGAGACACCGAAGGACTTCAATGATTTCTTTGAGAAATTCATGGAAGGGAAAGTTTTTGGGAACTGTTGGTTTGAGCACATCAAGACGTGGTACGCTAATAGAGACAACATGAACTTCCTGTACATCACATATGAAGAGATGATCAAGgaccTGCGCTCCATGGTGGAGAGGATGTGCAGGTTTCTAGGGAAGGATTTGACAGAGGAGCAGATGGCCAGTGTGGTGGAACACAGCACCTTTAGAACCATGAAACAGAACCCGCAGGCTAACTACAAGACGGTGCCCGACTCCCTGCTTGACCACAACAAGGGCACGTTTATGAGGAAAGGGACCATTGGGGACTGGAAGAACCATTTCACTGTTGCACAGAGCGAGAGATTTGACAGTGTCTTCCAGGAGAAGATGAAGGACCTGCCCCTCTCTTTTGCTTGGGACATCAATGACATCACTAGTGTCACGTGATGACATCCTAGTCACGTCTTGCAGGGATGTTTTTAATCCTTGGGCGGGCCCCCTAAGCATTTTTTCAGGTCACCTAAGTCCAAATAGTGTAAaaagaaaaaa

Function

NR:

description
amine sulfotransferase-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556158.2 False 1286 mRNA 0.48 7 26781796 26786966
XM_021556163.2 False 1363 mRNA 0.48 8 26781796 26786970
XM_021556160.2 True 1115 mRNA 0.49 7 26781796 26786984

Neighbor

gene id symbol gene type direction distance location
LOC110485094 LOC106605523 coding downstream 19162 26760385 ~ 26762634 (-)
lars2 lars2 coding downstream 55636 26683358 ~ 26726160 (-)
LOC110539285 LOC106579350 coding downstream 106147 26641958 ~ 26675649 (-)
LOC110539269 LOC106579366 coding downstream 140800 26629576 ~ 26640996 (-)
ggctb ggct coding downstream 193151 26585791 ~ 26588645 (-)
LOC110534567 cf113 coding upstream 7165 26794149 ~ 26814659 (-)
LOC110485107 LOC106605539 coding upstream 47680 26834664 ~ 26839122 (-)
LOC110485118 cndp1 coding upstream 62759 26849743 ~ 26858369 (-)
LOC110485134 LOC106605538 coding upstream 71427 26858411 ~ 26863425 (-)
LOC110485162 LOC106605541 coding upstream 124414 26911398 ~ 26917150 (-)
G127268 NA non-coding downstream 44017 26736841 ~ 26737779 (-)
G127131 NA non-coding downstream 97158 26684168 ~ 26684638 (-)
G127074 NA non-coding downstream 153193 26626693 ~ 26628603 (-)
G127080 NA non-coding downstream 155177 26626166 ~ 26626619 (-)
G127307 NA non-coding upstream 33782 26820766 ~ 26822599 (-)
G127313 NA non-coding upstream 46188 26833172 ~ 26854454 (-)
G127342 NA non-coding upstream 91466 26878450 ~ 26914822 (-)
G127323 NA non-coding upstream 115039 26902023 ~ 26903399 (-)
G127372 NA non-coding upstream 148488 26935472 ~ 26935844 (-)
G127083 NA other downstream 219669 26561614 ~ 26562127 (-)
G125305 NA other downstream 2005169 24775220 ~ 24776627 (-)
LOC110538887 LOC106605647 other downstream 2247267 24531424 ~ 24540898 (-)
G125043 NA other downstream 2456960 24324580 ~ 24324836 (-)
LOC110485245 ubr5 other upstream 484276 27231538 ~ 27278158 (-)
G129250 NA other upstream 979173 27766157 ~ 27766532 (-)
LOC110485663 LOC106579570 other upstream 1309698 27933389 ~ 28149986 (-)
G129582 NA other upstream 1523335 28310319 ~ 28310732 (-)
LOC110534614 LOC106605399 other upstream 1690202 28475823 ~ 28533709 (-)

Expression


Co-expression Network