LOC110534567 (cf113)


Basic Information

Item Value
gene id LOC110534567
gene name cf113
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26794149 ~ 26814659 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943696.1
AAATCCATCAGCTCAAACTGAAGGAGGAGAAGCCAACAGGGCCAGTAAAGTCAAGTTGTTAGCTAGCGTTGCTAAGATGGCATATGAATGAAAAGTGAAACAGAAACACATATATTTTGAAAGTAGTCACATAAGTTAAGCATTAGTACGGCACATCGTCCATATTCTTGAAATCGTGTTAGTGTGACAGCTGAGCACCAGAAACAACAAGCCATGCTGACGTGTGAGATTTGTGGCAAGGAATTGGTGTTGGACGAGGACATGAAGACCCATCTCCTCCTGAGCCACATGGAGAATGACATGGGCTGCCCCCTCTGTTCCTGGTCCGGAGTCACCTACAACGAACTCCGCTTCCACATCAATACCACACACAAAGAGAAGCAGGACCATGACGAAGCAGAGGGTAGAGGTGGTCACAGTCTTGTCAGGCCCAGCTCAAGTCCTACTCCCTCTACCACCATAGTGGACAGTCACTGCAAACAAGCCATTGGTTTGTCTAGGTCTGAGGGTTCTGAAAAAGGAGTAGCCAATGGGAACAGGTTTGACACCATTGGAGGAGGGGTCTCACTCAGGACATCCAATAGCACACTGGAGTCTAAGGAGCGAATGACTGTATCCCCCCAAGCTTTTAGTAGGGGGGAGTCCGGTGGAGGGCGAGCAGTGGCCATTGTTGAACCCACCTCTTCAATGTCTACGGGCTTTCTGAGATCAGCTCAGGACTCCAGTAGGCCTACTAGCAGACACTGTATTGCTGAGGACTCTGTGGGAGTGGGATCCGCAGAGCACACCACAGTCAAACAGAAGCGTTTCTCCTCCCCACTTAAAGAGAAGCAGTTTTCCTGTCCTATGTGTGCTCTGGTCTGCACAGATGCCTTCATCCTACAGGAACATGTTGAATTGCACTTGCTAGAAGAGAGCCCAGCTGAAGAGGCTGTCCTGGGGGCCACATCATCAACCGAGGCAGCATCATCCAGCAACAGCTCAGGTGGGAAGAGTTATGAGTGTCCCCTGTGTTCTGTGGTGTGTGGAGACTGCTACTCCCTACAGGAACATGTGGAGCTGCATCTTGACAATGGCACAGTCACTAGTGCAGtgagcCCTGGCTCAGACCTGAGGCTGGCCAGACGgctgcaggaggaggagaagcagaggaggaaggagCAGGAGGCcaagagggaggcagaggagttCAAGAAGCTGCAGaggcAGTTTGGTGTGGATGGGAGGGGGGGCTACcgcagacagatggagaggaccATGGAGAAAGCCGTGTCTCGAGGTGTCATGGTGCCTACTGACTTCCACAACAAGAGAGCAGAGATGATGGAGGCTCTGGCCTCAGGGGTCGACGATGGCAGGACCAGAacgcaggGTGTGCTGGGTGCTCTGTATGTTTACTACCAGAGGGAGGCCAGAGACTGTGTCCACGTGTGGCTGAGTGCTGACACAGACCACTTCTGCTCATCAGAGGGGGATAAGGGCTGGGGTTGTGGCTACAGAAACTTCCAGATGCTCCTGTCTTCTCTGCAAAGAATGGAGCCCTACACTACCTGTCTCTCAgAGGGGTCAGTACCCAGCATCCCACAGGTGCAGGTGTTGATAGAGGGGGCGTGGCGGGAGGGGTTAGACCCACAGGGTGCCACCCACTTTAACCAGCGACTACAGGGCACACGGGCCTGGATAGGAGCTACAGAGATCTACGCTCTCTGCACCTCCCTCAGAGTCAGTGCCCGTGTTCTAGACTTCCACCAGCCCACGGGTCCAGGAGACACCCACCCCCGCCTCTTTGACTGGGTGAAGCAGTACTTCTCTCAGACTGCCACCAGAGGCGCCAGACTACCGCCCCGGGTGGTGCAGACCACACAGCCGCCCCTCTACCTCCAGCACCAAGGCCATAGCCGCTCTATAGTAGGAGTGGAACAGAAGAAGAATGGCAGCCTGTGCCTGTTGCTCCTGGACCCTGGCTGTTCACCTGGAGATGTGAGGAAACTGCTGAGCCAAGATGGCTCCACTGTTAGCACAGCTGTCCGCCGCATGAGGAAGTTCTCTGGCAACCTGAAACATAGGCAGTACCAGGTTGTGGTTGTAGATGGCATGCTCTCCCCCGAGGAGAAACAGaCCCGCGTTCTCAACTCAAGAACACTCCAAGCCGAGAGGATCCCTTGATGCTGGAATGCAGTTGTCGCATTCATTTTACTGTGAATGTAAATTTGTAACTGCCAAAAACATTTCATGTTGAATTTTCTTTGACATTTTATTAAGGTAATAAATGATGTATTTTTAA
>XM_036943698.1
ATTCAAATAACTCTCGATGTGAATTTGGATTGGTTGGCCAAAAGGGGATTTGAAGACAGACCCTGCCATGCACATCTTCACACGAAAACAGCAGTTGGGTGTTAGTGTGACAGCTGAGCACCAGAAACAACAAGCCATGCTGACGTGTGAGATTTGTGGCAAGGAATTGGTGTTGGACGAGGACATGAAGACCCATCTCCTCCTGAGCCACATGGAGAATGACATGGGCTGCCCCCTCTGTTCCTGGTCCGGAGTCACCTACAACGAACTCCGCTTCCACATCAATACCACACACAAAGAGAAGCAGGACCATGACGAAGCAGAGGGTAGAGAGAAGCAGTTTTCCTGTCCTATGTGTGCTCTGGTCTGCACAGATGCCTTCATCCTACAGGAACATGTTGAATTGCACTTGCTAGAAGAGAGCCCAGCTGAAGAGGCTGTCCTGGGGGCCACATCATCAACCGAGGCAGCATCATCCAGCAACAGCTCAGGTGGGAAGAGTTATGAGTGTCCCCTGTGTTCTGTGGTGTGTGGAGACTGCTACTCCCTACAGGAACATGTGGAGCTGCATCTTGACAATGGCACAGTCACTAGTGCAGtgagcCCTGGCTCAGACCTGAGGCTGGCCAGACGgctgcaggaggaggagaagcagaggaggaaggagCAGGAGGCcaagagggaggcagaggagttCAAGAAGCTGCAGaggcAGTTTGGTGTGGATGGGAGGGGGGGCTACcgcagacagatggagaggaccATGGAGAAAGCCGTGTCTCGAGGTGTCATGGTGCCTACTGACTTCCACAACAAGAGAGCAGAGATGATGGAGGCTCTGGCCTCAGGGGTCGACGATGGCAGGACCAGAacgcaggGTGTGCTGGGTGCTCTGTATGTTTACTACCAGAGGGAGGCCAGAGACTGTGTCCACGTGTGGCTGAGTGCTGACACAGACCACTTCTGCTCATCAGAGGGGGATAAGGGCTGGGGTTGTGGCTACAGAAACTTCCAGATGCTCCTGTCTTCTCTGCAAAGAATGGAGCCCTACACTACCTGTCTCTCAgAGGGGTCAGTACCCAGCATCCCACAGGTGCAGGTGTTGATAGAGGGGGCGTGGCGGGAGGGGTTAGACCCACAGGGTGCCACCCACTTTAACCAGCGACTACAGGGCACACGGGCCTGGATAGGAGCTACAGAGATCTACGCTCTCTGCACCTCCCTCAGAGTCAGTGCCCGTGTTCTAGACTTCCACCAGCCCACGGGTCCAGGAGACACCCACCCCCGCCTCTTTGACTGGGTGAAGCAGTACTTCTCTCAGACTGCCACCAGAGGCGCCAGACTACCGCCCCGGGTGGTGCAGACCACACAGCCGCCCCTCTACCTCCAGCACCAAGGCCATAGCCGCTCTATAGTAGGAGTGGAACAGAAGAAGAATGGCAGCCTGTGCCTGTTGCTCCTGGACCCTGGCTGTTCACCTGGAGATGTGAGGAAACTGCTGAGCCAAGATGGCTCCACTGTTAGCACAGCTGTCCGCCGCATGAGGAAGTTCTCTGGCAACCTGAAACATAGGCAGTACCAGGTTGTGGTTGTAGATGGCATGCTCTCCCCCGAGGAGAAACAGaCCCGCGTTCTCAACTCAAGAACACTCCAAGCCGAGAGGATCCCTTGATGCTGGAATGCAGTTGTCGCATTCATTTTACTGTGAATGTAAATTTGTAACTGCCAAAAACATTTCATGTTGAATTTTCTTTGACATTTTATTAAGGTAATAAATGATGTATTTTTAA
>XM_036943690.1
ATGGAAATTCAAATAACTCTCGATGTGAATTTGGATTGGTTGGCCAAAAGGGGATTTGAAGACAGACCCTGCCATGCACATCTTCACACGAAAACAGCAGTTGGGTGTTAGTGTGACAGCTGAGCACCAGAAACAACAAGCCATGCTGACGTGTGAGATTTGTGGCAAGGAATTGGTGTTGGACGAGGACATGAAGACCCATCTCCTCCTGAGCCACATGGAGAATGACATGGGCTGCCCCCTCTGTTCCTGGTCCGGAGTCACCTACAACGAACTCCGCTTCCACATCAATACCACACACAAAGAGAAGCAGGACCATGACGAAGCAGAGGGTAGAGGTGGTCACAGTCTTGTCAGGCCCAGCTCAAGTCCTACTCCCTCTACCACCATAGTGGACAGTCACTGCAAACAAGCCATTGGTTTGTCTAGGTCTGAGGGTTCTGAAAAAGGAGTAGCCAATGGGAACAGGTTTGACACCATTGGAGGAGGGGTCTCACTCAGGACATCCAATAGCACACTGGAGTCTAAGGAGCGAATGACTGTATCCCCCCAAGCTTTTAGTAGGGGGGAGTCCGGTGGAGGGCGAGCAGTGGCCATTGTTGAACCCACCTCTTCAATGTCTACGGGCTTTCTGAGATCAGCTCAGGACTCCAGTAGGCCTACTAGCAGACACTGTATTGCTGAGGACTCTGTGGGAGTGGGATCCGCAGAGCACACCACAGTCAAACAGAAGCGTTTCTCCTCCCCACTTAAAGAGAAGCAGTTTTCCTGTCCTATGTGTGCTCTGGTCTGCACAGATGCCTTCATCCTACAGGAACATGTTGAATTGCACTTGCTAGAAGAGAGCCCAGCTGAAGAGGCTGTCCTGGGGGCCACATCATCAACCGAGGCAGCATCATCCAGCAACAGCTCAGGTGGGAAGAGTTATGAGTGTCCCCTGTGTTCTGTGGTGTGTGGAGACTGCTACTCCCTACAGGAACATGTGGAGCTGCATCTTGACAATGGCACAGTCACTAGTGCAGtgagcCCTGGCTCAGACCTGAGGCTGGCCAGACGgctgcaggaggaggagaagcagaggaggaaggagCAGGAGGCcaagagggaggcagaggagttCAAGAAGCTGCAGaggcAGTTTGGTGTGGATGGGAGGGGGGGCTACcgcagacagatggagaggaccATGGAGAAAGCCGTGTCTCGAGGTGTCATGGTGCCTACTGACTTCCACAACAAGAGAGCAGAGATGATGGAGGCTCTGGCCTCAGGGGTCGACGATGGCAGGACCAGAacgcaggGTGTGCTGGGTGCTCTGTATGTTTACTACCAGAGGGAGGCCAGAGACTGTGTCCACGTGTGGCTGAGTGCTGACACAGACCACTTCTGCTCATCAGAGGGGGATAAGGGCTGGGGTTGTGGCTACAGAAACTTCCAGATGCTCCTGTCTTCTCTGCAAAGAATGGAGCCCTACACTACCTGTCTCTCAgAGGGGTCAGTACCCAGCATCCCACAGGTGCAGGTGTTGATAGAGGGGGCGTGGCGGGAGGGGTTAGACCCACAGGGTGCCACCCACTTTAACCAGCGACTACAGGGCACACGGGCCTGGATAGGAGCTACAGAGATCTACGCTCTCTGCACCTCCCTCAGAGTCAGTGCCCGTGTTCTAGACTTCCACCAGCCCACGGGTCCAGGAGACACCCACCCCCGCCTCTTTGACTGGGTGAAGCAGTACTTCTCTCAGACTGCCACCAGAGGCGCCAGACTACCGCCCCGGGTGGTGCAGACCACACAGCCGCCCCTCTACCTCCAGCACCAAGGCCATAGCCGCTCTATAGTAGGAGTGGAACAGAAGAAGAATGGCAGCCTGTGCCTGTTGCTCCTGGACCCTGGCTGTTCACCTGGAGATGTGAGGAAACTGCTGAGCCAAGATGGCTCCACTGTTAGCACAGCTGTCCGCCGCATGAGGAAGTTCTCTGGCAACCTGAAACATAGGCAGTACCAGGTTGTGGTTGTAGATGGCATGCTCTCCCCCGAGGAGAAACAGaCCCGCGTTCTCAACTCAAGAACACTCCAAGCCGAGAGGATCCCTTGATGCTGGAATGCAGTTGTCGCATTCATTTTACTGTGAATGTAAATTTGTAACTGCCAAAAACATTTCATGTTGAATTTTCTTTGACATTTTATTAAGGTAATAAATGATGTATTTTTAA

Function

NR:

description
zinc finger with UFM1-specific peptidase domain protein-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24134 ZUP1, ZUFSP; zinc finger-containing ubiquitin peptidase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943696.1 False 2284 mRNA 0.53 12 26794149 26813463
XM_036943698.1 False 1790 mRNA 0.54 12 26794149 26814653
XM_036943690.1 True 2213 mRNA 0.54 12 26794149 26814659

Neighbor

gene id symbol gene type direction distance location
LOC110485095 LOC106579313 coding downstream 7165 26781796 ~ 26786984 (-)
LOC110485094 LOC106605523 coding downstream 31515 26760385 ~ 26762634 (-)
lars2 lars2 coding downstream 67989 26683358 ~ 26726160 (-)
LOC110539285 LOC106579350 coding downstream 118500 26641958 ~ 26675649 (-)
LOC110539269 LOC106579366 coding downstream 153153 26629576 ~ 26640996 (-)
LOC110485107 LOC106605539 coding upstream 20005 26834664 ~ 26839122 (-)
LOC110485118 cndp1 coding upstream 35084 26849743 ~ 26858369 (-)
LOC110485134 LOC106605538 coding upstream 43752 26858411 ~ 26863425 (-)
LOC110485162 LOC106605541 coding upstream 96739 26911398 ~ 26917150 (-)
LOC110485234 LOC106605534 coding upstream 369851 27184510 ~ 27202253 (-)
G127268 NA non-coding downstream 56370 26736841 ~ 26737779 (-)
G127131 NA non-coding downstream 109511 26684168 ~ 26684638 (-)
G127074 NA non-coding downstream 165546 26626693 ~ 26628603 (-)
G127080 NA non-coding downstream 167530 26626166 ~ 26626619 (-)
G127307 NA non-coding upstream 6107 26820766 ~ 26822599 (-)
G127313 NA non-coding upstream 18513 26833172 ~ 26854454 (-)
G127342 NA non-coding upstream 63791 26878450 ~ 26914822 (-)
G127323 NA non-coding upstream 87364 26902023 ~ 26903399 (-)
G127372 NA non-coding upstream 120813 26935472 ~ 26935844 (-)
G127083 NA other downstream 232022 26561614 ~ 26562127 (-)
G125305 NA other downstream 2017522 24775220 ~ 24776627 (-)
LOC110538887 LOC106605647 other downstream 2259620 24531424 ~ 24540898 (-)
G125043 NA other downstream 2469313 24324580 ~ 24324836 (-)
LOC110485245 ubr5 other upstream 456601 27231538 ~ 27278158 (-)
G129250 NA other upstream 951498 27766157 ~ 27766532 (-)
LOC110485663 LOC106579570 other upstream 1282023 27933389 ~ 28149986 (-)
G129582 NA other upstream 1495660 28310319 ~ 28310732 (-)
LOC110534614 LOC106605399 other upstream 1662527 28475823 ~ 28533709 (-)

Expression


Co-expression Network