LOC110485096 (LOC106605526)


Basic Information

Item Value
gene id LOC110485096
gene name LOC106605526
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26813484 ~ 26823336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556171.2
CAAGGAGGGTTACTGGGAAATTTTTAAGCGATACAAGACGCCATATTGCTCTCAGCTGGACTCGGGAGTTTGCGTGAAGGAAATAATAATACCTAGCTACACCTAGGAGTTTCTGACATTATTCATCTGAAATGGACGAGATGGCAAGCCCAGGGAATGACCGAATGAAGAGTTACAAGAACAAAGCGCTGAACCCACAGGAGATGCgccggaggagagaggaggaggggatccAACTCCGCAAACAGAAGAGAGAAGAGCAGCTGTTCAAgaggaggaatgtgtgtgtgcccTCGGGCGACGAGTCCATGTTGGAATGCCCTGTCCAGGACCCTGACATCAGCTCCACTGCACCAGTCTCAGGTgaaggTGTCATAACTCCAGACATGATCCAGATGATCTTCTCTGAGGATCCAGACCAGCAGCTGATTGCCACACAGAAATTCAGGAAGTTACTCTCCAAAGAGCCCAACCCCCCCATCGATGAGGTCATCCTCACCCCAGGGGTCGTCAATAAGTTTGTGGAGTTCCTCAAGAGGAGTGAGAACTGCACTCTTCAGtTTGAGGCAGCCTGGGCCCTGACCAACATTGCCTCTGGGACCTTCCTGCACACCAAGGTGGTTATCGAGACGGGAGCCGTGCCCATCTTCATTGAGCTGCTCAACTCGGACTACGAGGACGTCCAGGAGCAGGCCGTGTGGGCCCTGGGGAACATCGCCGGGGACAACGCAGAGTGCAGAGACTACGTTCTCAACTGTGGCATCCTGCCCTCCTTACaacaGCTGCTGGCTAAATCCAACCGTCTCACCACAACTAGGAATGCTGTATGGGCTTTGTCTAACCTGTGTAGAGGGAAGAACCCCCCTCCAGACTTCACCAAGGTGTCTCCCTGTCTGAGTGTGCTGTCCAGGCTGCTGTTCAGTAGTGACCCAGACGTGTTGGCTGATGCCTGCTGGGCCCTCTCTTACCTGTCTGACGGACCCAATGACAAGATACAGACCGTCATCGACTCTGGGGTCTGCCGCAGACTGGTGGAGCTACTCATGCACAGTGATTATAAAGTGGTCTCTCCTGCGCTGCGTGCTGTGGGAAACATAGTGACAGGAGATGACATTCAGACTCAGGTGATTCTGAACTGCTCGGCGTTGCCATGCCTATTACACCTGCTCAGCAGTCCCAAGGAGTCCATCAAGAAGGAGGCCTGCTGGACTGTGTCTAATATTACAGCTGGGAACAGAGCACagatccagACGGTGATAGATGCCAACATCTTCCCAGTGCTGATAGAGATTCTTCAGAAGGCAGAGTTCCGCACCAGGAAGGAAGCAGCGTGGGCTATAACCAACGCTACCTCTGGGGGCACTCCTGAGCAGATCAGGTACCTGGTTAGTCTGAACACCATCAAGCCCATGTGTGACCTGCTGACAGTGATGGACAGTAAGATAGTGCAGGTGTCACTGAACGGCCTGGAGAACATCCTGAGACTGGGAGAGCAGGAGGCCAAGCAGAACGGCACCGGCATCAATCCTTACTGTGCCCTCATAGAGGAAGCCTATGGTCTGGACAAGATCGAGTTCTTGCAGAGCCATGAGAATCAGGAGATCTACCAGAAGGCTTTTGACCTGATCGAGCACTACTttggtgtggaggaggaggacgcTAGCATCGCCCCGCAGGTGGACCAGAACCAAGGCCAGTTTATCTTCCAGCAGCAGGATGGGCCCATGGAGGGCTTCCAGCTCTAACCAcaccctgacctttgaccttCACCCCTTTGAGTATCTACCACCCCCCCAGGGGAGTCCAGTCTCCATAGGGCTGTTTAGACCTGAACTGATGACACTACCCCATCTCGCCTCTCTCACTGGACCCAcctgctctacctctctctctccaaatcttCCTCTCCTGCAAGGCTAGCCTTGCCCTGCCACAGCACCCTATCTGgaaagggcgagagagggagcatgagagagagagaacctgactGACTGAAAGACTGACTGAGGACAGCTCATTCTTAGTGTTTGAGACTTCCTGGAGCTGTATGCAGCGTTTGGGTTGTTTCTTTCTATTGTAGACTATACCGTCTGTGCAGTGGCAAGCCTCCTAACATGGTAGTCATAGGAAAGAAAGAGTTGGCTGATATTTTGTccctaaaatgtttttttattttataatttcctgtgatattattattattattattacgacACTGGTGTCTCAATCACCCTCCATATCTCCTTTTTAAATGTGAAACTACCTCTTCAGTCttcaaaaagaaaaaaaaagatatgAAGCATTTTGACTGAGGATTCTCTGGATTTCACCAGATAGTCCAAGTCAAACTCCTATCCCAACTAGTGTCCTGAAGAGGTTTAGTGACTGTATCAGCTCATTTCCTAACTTCTTGTACCCTTTGACCAGATCTGAGAGAACAGTTGGCTACAGACAGCCTACTGTTTTCGTTGGAGGATgtaagatgatgatgatgatgatgatgtgtgtatTCCAGTGACATTATTATTTAAGTTGGAAAGCAGGTGGACATCTTTCTCTGGGGTCTCTCTTCAATGATAAAATTGACAATGGTTGACCTGGAGATTCCTAATCTTATTTATTCTGTTGAAATGTCTTTCAGTTCCTTGACCCTGGCAATATTAACTTTAGAATAACAGAACACCAGTTGCATCGAACTGACCGCAGTAATGTAGATGCATTGTGTAGGGAAACACTGCATGTCACTTGCTGCATTAGTCAGCATAGCGTTCAGCCAGGCTTATGCTTATCTGTAACAACGTTACGGTAGGATTGACACAACGTTAGGGTAACGTTGAGGAGTGTTCTGCTTGTGTGAGTGCTCCTTATTGAAGCGCCGCCAGCCAGCCACAGTACAGTGCCAGACGGGTTAGGTTCAGTGACTAGTATCTGTTGTGTGAtgcagtgtctgtctgtaacaatCTCCAGGTGAATAAAAACACAGGCTCTCAGAGTTCTTTTGTAGTTGTGTTTTTTCCCGTCATCTCACCATGAGTTATTATGATGTCATGACTTATTTGTTTTGCTGAAGTCTTTTTGTTTTATTGGTGGTGGTTAACCTTACATTGGACTTAACGCTATTGGACGTTGATATAAAATGCTCAGTTGAACTTGAGTGCtttgtatattatatatacatgtaAGAAATTATATGGGGGAGAAAATACCTACTAATTGGAAGGGGTGATTTATTAATTGCAGTATAATGTGTTTTCTGACTGAGATATGCAATGTTGTACTTATTGTTGAGTCTTTGCACACTTACCTGTTGCTGCTTTATTCTGATCTTTTGTTGGGTATGTGTTTGTTTCCTGGTTCCCCTCACCTTTACAACTGCTTCTAGAACATGTTTTGTTTTAAAACTGCTTCTAGAACATGTTTTGTTTTAAAACTGCTTCTAGAACATGTTTTGTTAAGGActccttacatttttttttaaacttttttttttataaaaaattatATGAACTCTTGATTGGTGAAGGAAACCCAACCTGGCTAAACTGAACTGCTGAGCCTTTATTAGTGTGTGACTACAAGTATTTCAGTATTCTACTTTTCTTTTAGTTTTAAACTCATCACTCCTGAATCCTGGCGCTTTACTTTTGGCGTGTTACATTTTTGGAAATTGAAGATGCTGTATACATTTTGAGTACCATATTAATTGATCTTAGGCCTTGGAAATGATATATTTACGTGAGATGGAAACAGTTTATAGTGCTACATTTTGTCATGCACATAAAAAATGGTGTATAGTTTTCTAATATTTCTTATGTTTGTACGATTGGATGATATATTATTTTTATGTTTTAGGTTGATTTATTTCTCCCCATTTGGGAATTGTTTTGGCTCTGATACAGAGGCTATAAGGACTGCTGTGGTATTCTGTCCAGAATTCTCTAGGTGGTTACCATATCATGCCGCCATTGTGGTTGTTTCCTTTAATCCAATGGACCACAGAGGGCTGTGTGTGAAGCTGGACTAAACAGCTCCTCTCTGTGTTACTCATGGAGCTGTTGTCTGGCTCTCCTTTGAGGGGTTAAGGTGGAGTTGACTGTAAAATAATGAAGAATAAAGAAATACAATGATCTGTTA

Function

NR:

description
importin subunit alpha-6

GO: NA

KEGG:

id description
K15042 KPNA5_6; importin subunit alpha-6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556171.2 True 4134 mRNA 0.45 14 26813484 26823336

Neighbor

gene id symbol gene type direction distance location
rwdd1 rwdd1 coding upstream 34005 26770464 ~ 26779479 (+)
LOC110485092 LOC106605522 coding upstream 47667 26746971 ~ 26765817 (+)
LOC110485091 LOC106605521 coding upstream 71704 26738924 ~ 26741780 (+)
trnar-acg-2 NA coding upstream 172245 26641167 ~ 26641239 (+)
LOC110539196 LOC106605517 coding upstream 200047 26596265 ~ 26613437 (+)
LOC110485145 LOC106579269 coding downstream 74593 26897929 ~ 26903411 (+)
LOC110533712 NA coding downstream 81565 26904901 ~ 26909167 (+)
LOC110485187 LOC106605537 coding downstream 94059 26917395 ~ 26934478 (+)
LOC110485212 LOC106605536 coding downstream 324544 27147880 ~ 27175747 (+)
LOC110485224 rn146 coding downstream 355651 27178987 ~ 27182559 (+)
G127188 NA non-coding upstream 21193 26792028 ~ 26792291 (+)
G127165 LOC106605523 non-coding upstream 51956 26760442 ~ 26761528 (+)
G126748 NA non-coding upstream 152117 26660012 ~ 26661367 (+)
G126695 NA non-coding upstream 250142 26563047 ~ 26563342 (+)
G126694 NA non-coding upstream 251476 26561498 ~ 26562008 (+)
G127202 NA non-coding downstream 1976 26825312 ~ 26825904 (+)
G127209 NA non-coding downstream 4912 26828248 ~ 26828451 (+)
G127211 NA non-coding downstream 6859 26830195 ~ 26830696 (+)
G127216 NA non-coding downstream 10771 26834107 ~ 26855129 (+)
G127198 LOC106605538 non-coding downstream 34362 26857698 ~ 26861242 (+)
G127190 cf113 other upstream 17722 26794210 ~ 26795762 (+)
G126727 LOC106581475 other upstream 184835 26626849 ~ 26628649 (+)
G126387 LOC105417071 other upstream 763380 26049850 ~ 26050104 (+)
G125934 NA other upstream 1055631 25682880 ~ 25757853 (+)
LOC110534557 LOC106605501 other upstream 1431172 25377221 ~ 25396334 (+)
G127644 LOC106605534 other downstream 366655 27189991 ~ 27190593 (+)
LOC110485466 LOC106605529 other downstream 478742 27288172 ~ 27303644 (+)
G128185 NA other downstream 893146 27716482 ~ 27717163 (+)

Expression


Co-expression Network