LOC110485107 (LOC106605539)


Basic Information

Item Value
gene id LOC110485107
gene name LOC106605539
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26834664 ~ 26839122 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556185.2
ATGGCTGTCATTGGGGCCTCTTCCTCTGAGATTTCCATCTCCGTTGCCCGGCAACTCAATCTAGAGCTCATCCCTCAAATCAGTTACGCCTCCACCGCCATCATCCTGAGTGACAAGAAACGTTTCCCTACTTTCCTGAGGACCGTACCTAGTGACCTGTACCAGACACGGGCCATGGTCCAGTTGCTTAGCGACAGCAAATGGACCTGGGTGGGCGTGGTCACAACAGATGGAGACTACGGCCGTTCTGCCCTGGACAGCTTCTTCTCCCAGGCAACCGCCTCAGGCATCTGTGTGGCCTTCAAGGAGATCCTCCCTAATTCACTAACCAGGCCTGACGGTGAATCAGCAGTCAGACAAGTCGCCACCACCCTCCGCCGGAACCCCAATGTCAAGGTGGTGGTGTCATTCGCCAAGCCTACTCAGATGATGTACCTATACCAGGAGCTGAGGGgtctggggttggggctgggagAGAGGGTATGGGTGGCCAGTGACAGCTGGTCCTCGTCCAAGGAGGTCCTGGGAAAGATGGACCTCCCAGATATTGGTCATGTGGTGGGCTTCACCTTCAAAACAGGGAACCTGGCTCATTTCCATCATTACCTGATGAATCTGAGTGACAACAATGATGTCATAGGAAACAACTCCTTCCTAAAGGAGTTCTACTCCCTGCCAAACGGGTCGGGAGACCCCAAGGTTGTGTCCTCCTCCACAGCCGCAGCAGAGATCCTGTTAAACAACAGCTATGCGAATGTAGTCTTCAATGTGGAGATGGCTGTCAGTGCCATCGCCCATGCAGTGGCTGATATCTGCAGCAGAAAGGACTGCAAGACACCTGGCAATGTCCAACCCTGGCAGGTGCTTGAAGCCCTGAGAGGCAGTCGGTTTGAGCTGGAGGGGAAAAGCTACACGTTTGACCAGAAAGGAGACATCAACATGGGCTATGATGTAACCCTGTGGAGGTCTGTGAGAGGGGTCATCAACATCCATGACGTTGTAGCTGAGTACCATCCAATCAACAACAGCTTCATCTACACCAGCGGAAACACCAAAAATATCACTAACCTGatgGATGTGGTGTCTGTGTGCTCAGCTAGCTGTGAACCTGGGAAGTTCAAGAAGACTGCGGAGGGTCGGCACACCTGCTGCTATGAATGCATCAACTGCACTGAGAACCACTACTCCAACAACACTGaCATGGACCAGTGTCTCTCTTGTGATACAAAGAGAGAGTGGTCCCTGGAAGGGAGCTCTGGGTGCACCCATAAGACCCTGGAGTTCTTCTCCTGGCAGGATGGTTTCGCGGTGGTGCTGCTGGCGCTGTCGGCCCTGGGCATCGTCCTGGTTCTCCTGGTGGGGGCGCTCTTCCTACACCACCACCAGACCCCCGTTGTGAAGGCTGCCGGGGGTCCTCTCTCCCAGATCATCCTGCTCTCCCTAGTGGGAAGTTTTGTTAGTGCTGTGTTCTTTGTAGGACATCCCAGCAGCCTACAGTGTAAGGTGCGTCAGGTGCTGTTTGGACTCAGCTTCACCCTGTGTGTTTCCTGCATCCTGGTCAAGTCCCTGAAGATCCTGCTGGCCTTCCAGCTCAACCCTGACGTGAAGGACGTTCTCCGCCGCCTCTACCAACCCTATGCCATCATCTGTCTCTGCGTGGCCCTACAGGTCCTCACCTGCACCCTGTGGCTGGTCCTGCAGAGCCCCCGGGAGAAGGCCACCGTCTTTGCCACCACTGTGCTGGCCGAGTGTGACGAGGGCTCCCACGTGGCGTTTGGCGTGATGCTGGGCTACATCGCTGTCCTGGCGCTTGTCTGTTTCGCCTGTGCGTTTAAAGGCCGCAAGCTGCCACAGAAGTACAATGAGGCCAGGTTCATCACTTTCAGCATGCTCCTCTACCTCATGTCCTGGGTAATGTTCGTGCCCGTCTATGTGACCACCTCGGGGAAGTACCTGCCAGCAGTGGAGATGGTGGTCATCCTCATCTCCAACTATGGCGTCCTCAGCTGTCATTTCTTCCCCAAGTGCTACGTCATCCTCTTCAAGAAAGAGCACAACACCAAGAGTGCCTTCATGAAGAACGTGTTTGAGTATTCCAGAAAGGGCATTACTGACTCTAGCTCTGTCTCTGAGACGTCAGTCTCTCAGACAGAAGGGAAGTGCATCAGTAACTCTTATTCCATCAGTTCACCTTCCTTCTTCATGTCTACTACACCAATAGAACCCACAGCACCTCATAACTGTTGGTCCATTGGCCAGGACATTCAGAGCATTGACCCTGCAACCCATTGCACCGTAGTAGACCATGGAGTGTTTGTCACAGGTCAGCTGACTCGACCACACCATCTGAGGAGAAGCATGAGCCTATGAGTGGAGTGGACCACTGTCTGGAATTTTTACGTCTTACGGTACATCacacagtgtgtctctgtgatcctCTCTTTGGTTTGACTGTTCCCATTTTGCTTAGTCTACTGGCATGTgttttgcccagtgggttgtgGATTTTACATTCAAGGCAATTAGGTAATACTTTATTTGACACTGATATGGATATGATAAACAGGCATAAATCCAGGGGCGCAACTTGGTTTTATAAATGGGGGGgacataatatacagtgccttgcgaaagtattcggcccccttgaactttgcgacctt

Function

NR:

description
G-protein coupled receptor family C group 6 member A-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556185.2 True 2663 mRNA 0.53 6 26834664 26839122

Neighbor

gene id symbol gene type direction distance location
LOC110534567 cf113 coding downstream 20005 26794149 ~ 26814659 (-)
LOC110485095 LOC106579313 coding downstream 47680 26781796 ~ 26786984 (-)
LOC110485094 LOC106605523 coding downstream 72030 26760385 ~ 26762634 (-)
lars2 lars2 coding downstream 108504 26683358 ~ 26726160 (-)
LOC110539285 LOC106579350 coding downstream 159015 26641958 ~ 26675649 (-)
LOC110485118 cndp1 coding upstream 10621 26849743 ~ 26858369 (-)
LOC110485134 LOC106605538 coding upstream 19289 26858411 ~ 26863425 (-)
LOC110485162 LOC106605541 coding upstream 72276 26911398 ~ 26917150 (-)
LOC110485234 LOC106605534 coding upstream 345388 27184510 ~ 27202253 (-)
LOC110485460 LOC106605533 coding upstream 364068 27203190 ~ 27215402 (-)
G127307 NA non-coding downstream 12065 26820766 ~ 26822599 (-)
G127268 NA non-coding downstream 96885 26736841 ~ 26737779 (-)
G127131 NA non-coding downstream 150026 26684168 ~ 26684638 (-)
G127074 NA non-coding downstream 206061 26626693 ~ 26628603 (-)
G127342 NA non-coding upstream 39328 26878450 ~ 26914822 (-)
G127323 NA non-coding upstream 62901 26902023 ~ 26903399 (-)
G127372 NA non-coding upstream 96350 26935472 ~ 26935844 (-)
G127382 NA non-coding upstream 103641 26942763 ~ 26943032 (-)
G127391 NA non-coding upstream 109426 26948548 ~ 26948780 (-)
G127083 NA other downstream 272537 26561614 ~ 26562127 (-)
G125305 NA other downstream 2058037 24775220 ~ 24776627 (-)
LOC110538887 LOC106605647 other downstream 2300135 24531424 ~ 24540898 (-)
G125043 NA other downstream 2509828 24324580 ~ 24324836 (-)
LOC110485245 ubr5 other upstream 432138 27231538 ~ 27278158 (-)
G129250 NA other upstream 927035 27766157 ~ 27766532 (-)
LOC110485663 LOC106579570 other upstream 1257560 27933389 ~ 28149986 (-)
G129582 NA other upstream 1471197 28310319 ~ 28310732 (-)
LOC110534614 LOC106605399 other upstream 1638064 28475823 ~ 28533709 (-)

Expression


Co-expression Network