LOC110485134 (LOC106605538)


Basic Information

Item Value
gene id LOC110485134
gene name LOC106605538
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26858411 ~ 26863425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556206.2
ACCTCGCGACCCTTCCCATCAGGAGGTGAGCCAGTTACCAGAGGTATAAAAACCCTGTGTGTCCCCGGAGACTCCAGTGGGTTCTGAAGACAAGGGCAACATTAAACAAGTACCAAACTTACCAGGCTACGATGACGATCTGGCAACTGCCTTCCATGCTCCTTGTTGTTATATCAAGTgtctctcctcatcctcatcaCTTATTTGAGTATGATGAGCTGAGCCAATATGTTGACAGCCATCAGGAGGAATATGTACAGactctGAGGGACTGGGTTGCTGTAGAGAGCGACTCCAGTGATGTCTTGAGGAGGCCAGACTGCCATCGCATGATGGATATGACGGCTGAGAAACTACAAGCCATGGGAGGGAAGGTGGAACTGGTGGACATCGGCATACAAGAGCTGCCTGATGGCAAGACAGTGGCCTTACCCAAGGTGGTGACAGCCCAGTTTGGCAGTGACCCCAGTAAGCAGACAGTCTGTGTGTACGGACATGTGGATGTCCAGCCCGCTAAGCTAGAGGACGGCTGGGCCACTGAACCCTACAACCTGACCGACATCAACGGACACCTCTACGGCAGAGGGGCGTCTGACAACAAGGCCCCTGTCTTAGCCTGGATACATACAGTGGAGGCCTATCAGGCCCTCAGCATTGACCTGCCAGTCAATGTGAAGTTCATCATCGAGGGAATGGAGGAGACCGGGTCCAATGGCCTGGACGCCATGATCGTGGCGCAGAAAGACACGTTCTTCTCCGATGTCGATTACATCATCATCTCAGACTGTGGTTGGCTGAGCCGACGCCCCGCCCTCACCTACGGGACCAGGGGGAACTGCTACTTCTTTGCTGAGGTAGAGGGCCCAAAACAGGACCTACACTCAGGGGTGTATGGAGGTACAGTTATAGAGCCTATGACAGATCTGATCGGCATATTGGACACACTGATCAGCCCCAGTGGAAAGATCCTCATTCCAGGCATCAGAGAGGCCGTCGCCCCACTCTCAGACGAAGAGTGGAAGATGTACCAGGACATTGAGTTTGACATTGAGAGCTTTAAGTCCAAGATTGGCGTCAGCCAACTCATGTACAGCAACAAGGTAGATCTGCTGGCCCATCGTTGGCGTTACCCTACCGTTACCATCCATGGAATCGAGGGAGCCTTCTCTGGCCCTGGCTCTAAGACGGTCATCCCTGCTAAGGTCATTGCCAAGTTCTCCATCCGACAGGTCCCCAACATGGACCCAGCAGTGGTCAAGAAACAGGTCACAGACTACCTGTACTCTGTGTTTGCCAAGAGAAAGAGCCCCAACAAGCTGAAGGTGACCATGATCATCGGGGCTAAGCCCTGGTTAGCAGACACCAAGCACCCCCTGTACGAGGCAGGGAAAGCAGCCGTGAAGAGAGTGTTTGACGTGGAGCCAGACCTGATCCGTGAAGGGGGAACCATCCCCATCGCCAAGACCTTTGAGGACGTGACCGGGAAGAGCATCATCATGATGCCTATCGGAGGCTTCGACGACGGCCTCCACTCCCAGAACGAGAAGATGAGCAGGTACAACTACATAGAGGGGACCAAGTTGTTCATTGCGTACCTTCATGAAGTGGCCCATCTCAAGAAGGACTGAGAGCACCTCTTTTCATCACCACTGTTAAAAGACAGTTCTATAATGTGTATCTTGTATGTGATCCCATCAGTGGAGTCTGGCTTTGTTTAGCTTTTTTCCTGACGTTAACTTGTAACTTTTCTGGATTCTTTCCCTCTAAGCAAAACATTCCAGAAACCCTGTGAGTTCTTGGCATCTGATATAGCCTCaacactctgcctctctctctctctctctttctgtatctttcttcctccctcactttcctccattctctctcaatgtctctctctctcattttctctctcgtTCACACACAAATATCTACATGAAACAGCAAATAAATCTGGTTTGACGCAC

Function

NR:

description
cytosolic non-specific dipeptidase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556206.2 True 1967 mRNA 0.51 12 26858411 26863425

Neighbor

gene id symbol gene type direction distance location
LOC110485118 cndp1 coding downstream 42 26849743 ~ 26858369 (-)
LOC110485107 LOC106605539 coding downstream 19289 26834664 ~ 26839122 (-)
LOC110534567 cf113 coding downstream 43752 26794149 ~ 26814659 (-)
LOC110485095 LOC106579313 coding downstream 71427 26781796 ~ 26786984 (-)
LOC110485094 LOC106605523 coding downstream 95777 26760385 ~ 26762634 (-)
LOC110485162 LOC106605541 coding upstream 47973 26911398 ~ 26917150 (-)
LOC110485234 LOC106605534 coding upstream 321085 27184510 ~ 27202253 (-)
LOC110485460 LOC106605533 coding upstream 339765 27203190 ~ 27215402 (-)
LOC110485403 NA coding upstream 352547 27215972 ~ 27231128 (-)
LOC110485245 ubr5 coding upstream 368113 27231538 ~ 27278158 (-)
G127313 NA non-coding downstream 3957 26833172 ~ 26854454 (-)
G127307 NA non-coding downstream 35812 26820766 ~ 26822599 (-)
G127268 NA non-coding downstream 120632 26736841 ~ 26737779 (-)
G127131 NA non-coding downstream 173773 26684168 ~ 26684638 (-)
LOC110539285 LOC106579350 non-coding downstream 209504 26641958 ~ 26675649 (-)
G127342 NA non-coding upstream 15025 26878450 ~ 26914822 (-)
G127323 NA non-coding upstream 38598 26902023 ~ 26903399 (-)
G127372 NA non-coding upstream 72047 26935472 ~ 26935844 (-)
G127382 NA non-coding upstream 79338 26942763 ~ 26943032 (-)
G127391 NA non-coding upstream 85123 26948548 ~ 26948780 (-)
G127083 NA other downstream 296284 26561614 ~ 26562127 (-)
G125305 NA other downstream 2081784 24775220 ~ 24776627 (-)
LOC110538887 LOC106605647 other downstream 2323882 24531424 ~ 24540898 (-)
G125043 NA other downstream 2533575 24324580 ~ 24324836 (-)
G129250 NA other upstream 902732 27766157 ~ 27766532 (-)
LOC110485663 LOC106579570 other upstream 1233257 27933389 ~ 28149986 (-)
G129582 NA other upstream 1446894 28310319 ~ 28310732 (-)
LOC110534614 LOC106605399 other upstream 1613761 28475823 ~ 28533709 (-)

Expression


Co-expression Network