LOC110485145 (LOC106579269)


Basic Information

Item Value
gene id LOC110485145
gene name LOC106579269
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26897929 ~ 26903411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556215.2
CTTTCTTTTAGACAGAGTTTCCAATTCGCTCCTTACCCCTTCCTCTTGACACTAACTCTTGGAGATTTGAAGACTGTACAGGGTATGGATAGGTATATGCAATGTAGTGGAGGAGCTTCCACCTTACAGATCTGCACACCTTGAAGGGTAAGGGCCAAAGTGAAGTGGTAGGGAGTCAATTGGGACTGGCTGTGTTTCACACAATAGAGTGCAGATTACAATAAAACAAAAGTATCAAGaaaagagacagatagagatagacagtGTCCGTCAGCCAGACCTTTATCTGTTCGTAAATTAGCATCTCTGAGACAGTGAATTAACACGGTCATTTTCTGAACCAGGTCCAGCCCAGAGAAGCATACTGTAGCAAGTCAAGATGTGTCACAGAGGCTATCTAACGCCATTATGAAATCCTCCATGCCAGGCAGCCTTGAAGGACCTTAAGAAAGGGTTTTATGGTGAAAGGGGCTTATCTAAGGCAACGCTGGAGTATAAGATGGCTGAGATGGGGTGGACATGCTGTTAAAGCTCTGAGCCTGCAGACAATCCGCTCTCATCTTCACCACATCATCCTCTCTTCTTCACCTCCTTTTCCATCCCCTGAACCACCTTTCTACCCCGGCTACTATTCAGCATGGGAGCCAATTACAGCGTTGAAGAGGTTGACCACTTCTACACCAAGGACAACAACATGAGACACCACAATAATCCCCACTATCTGGTAGTGGAGAAAGACAAGCTGGCTGTGATTGACAAGTTATTCCTCGACCCAGCTGCCCCTGCCTCCAAAAACTGGGAGATCATCACAGGGAAGGATGCAGTGAAGCGTCGACGGAGTGTGTGCAGCTCAGAGGAGGGTAACTGCTCTGAGGACGAGGAGCCTGAGGACTTACTTCCTGTTCTCCGAAACCACAGCCAGCTCCTTAATGACCACCACATCGAGAGTCTAGCCAATCACATGCCAGCAAGGACACAGGGGTATCCATGGAACCTGGTCTACAGCACAGCCATTCATGGCACCAGCCTGAAGACTCTGTACAGGCAAATGGCCCACATCGACAGTCCTGTGCTTCTGGTCATCAAAGACATGGAAAAAAAGgtgtttggtgccttctcctcccatcccttcAGAGTGAGTGACTGTTGCTACGGAACAGGAGAGACTTTTGTCTACAGTTTCGACCCTGCATTCAAGGCCTACAGGTGGAGTGGTGAGAACTCGTACTTCATCAGGGGCCATATGGACTCTCTACAGATTGGTGGAGGAGGGGGGCTTTTTGGCCTGTGGCTGGATGCTGATCTGTACCACGGTGCCAGCTACTCCTGTCACACCTTCAACAACCAGCCCCTGTCCACCCAGCAAGACTTCACAGTGCAGGACCTGGAGGTCTGGACTGTCCAGTAAACAGAGCGAGACACTGAGAGACTCAGAagcggaaaagagagagagaaaaaagccaGAGCCATGTCTATCTATGGTTTACAACATGGCTTTACTTGTGTTCAGTGAGGTTTAGCCTGTGCTCAAGCTGTTAGAGTACAGTGAGCTGAATTCATATATGAACGGACAAAGCCATTGATCATGTGACACCAGTCATTCCTATGTGAAAACTCAATAGTGCATTTGAAGCCAAGGAAGTCTGTTAAGATGGTGTCTCATGTGGGAGATTTACGTAGGCATAACATGCTtagtttgagctactccaggatGTGACgctgcaggctagctcagtgctgccccctctcattgagttTTTCACATTGAAGGCAGATTGGGGTAAGGCACGCTGCCATTAGCTACAAAAGTATGATAATGACTTCTTCTGTGTGCGATTTTAAAATAATCGGTTCCAGCACATACATATGGTATAATAGAAGCAATTATCAGTAGCATTATTTTTTggtttgttattattttatttacacAAAGATTGCCATCTTCCCATTCACTATTAATGGGGATCCTGTGTTCTGCAAATAATGCCTGCAGTACTGTGGTTGGCCTTGAATGAGAGGGGGCAGTCATTCTCCCCTGGGTTTGTCCTGTGTAAAACCTGGTCTCGTGACTTTTAGGCTGGTTTTAGCTGTGTTTTACCAGCGCGTAACCTATTATACCAGCATTAACTCAGATTGTATCTGTGTTTCGCCTGGTTGTATCTGTGTTTTGCCTGGTTAACTGAGGACTGTAAAAACCTTTAGAAATACCTGGAAGTCCATTCACTTGTGGTCTCTAATGGTTTGTACTAAAGGTATGGGTTTAAATCCCATGTTAAATGTTTTCTTAACTTTGTAAAAGAGAATGAAAAAAAATGTCAAGAACAAAACAGGATATAAGATGTACGAATTGTTTTAATTTGGCATCTTCTTCACATTACTTTgatgttcttatttacaatgacggccaaggaacagtgggttaactgccttgttcaggggcagaacgacagatttgtaccttgtcagcacggtgattccaacgttctaaccactatttaaataaatgttatcTAGGgaagtattttgttttgtttgcttTGTTCTGTTCTATTTGTATGTGTTGAGTTTGTAAGTATGTTTTTCTGTATGTGTGCTGTACAGTGCTGGCACTGTTAATGGCTCATTAAAATTCTGCATTTCCAGGtgacaaaaatgtgctttaaa
>XM_021556222.2
GGGTTGCTATCAGCCAATGATATTTAGGGGGATGAAACTTGAATTATTTAAAAGAGAGCATTTGATGGTTGGGTACAGGTTATCAGTTCACACTCTTGCCTGTGCCTGTGGTACATACAGTATCATATACTAAGGCTAATGTTACATTATTAGTATAAATGAGTGTTAGACTAAGAGGAATATTAGTAGACATGAGACCAATGCAGGAGAACATCAAGGTGCTTTACTTTGCAAACAAATGTCTGGAGCCATATGTAGAGATCATCACAGGGAAGGATGCAGTGAAGCGTCGACGGAGTGTGTGCAGCTCAGAGGAGGGTAACTGCTCTGAGGACGAGGAGCCTGAGGACTTACTTCCTGTTCTCCGAAACCACAGCCAGCTCCTTAATGACCACCACATCGAGAGTCTAGCCAATCACATGCCAGCAAGGACACAGGGGTATCCATGGAACCTGGTCTACAGCACAGCCATTCATGGCACCAGCCTGAAGACTCTGTACAGGCAAATGGCCCACATCGACAGTCCTGTGCTTCTGGTCATCAAAGACATGGAAAAAAAGgtgtttggtgccttctcctcccatcccttcAGAGTGAGTGACTGTTGCTACGGAACAGGAGAGACTTTTGTCTACAGTTTCGACCCTGCATTCAAGGCCTACAGGTGGAGTGGTGAGAACTCGTACTTCATCAGGGGCCATATGGACTCTCTACAGATTGGTGGAGGAGGGGGGCTTTTTGGCCTGTGGCTGGATGCTGATCTGTACCACGGTGCCAGCTACTCCTGTCACACCTTCAACAACCAGCCCCTGTCCACCCAGCAAGACTTCACAGTGCAGGACCTGGAGGTCTGGACTGTCCAGTAAACAGAGCGAGACACTGAGAGACTCAGAagcggaaaagagagagagaaaaaagccaGAGCCATGTCTATCTATGGTTTACAACATGGCTTTACTTGTGTTCAGTGAGGTTTAGCCTGTGCTCAAGCTGTTAGAGTACAGTGAGCTGAATTCATATATGAACGGACAAAGCCATTGATCATGTGACACCAGTCATTCCTATGTGAAAACTCAATAGTGCATTTGAAGCCAAGGAAGTCTGTTAAGATGGTGTCTCATGTGGGAGATTTACGTAGGCATAACATGCTtagtttgagctactccaggatGTGACgctgcaggctagctcagtgctgccccctctcattgagttTTTCACATTGAAGGCAGATTGGGGTAAGGCACGCTGCCATTAGCTACAAAAGTATGATAATGACTTCTTCTGTGTGCGATTTTAAAATAATCGGTTCCAGCACATACATATGGTATAATAGAAGCAATTATCAGTAGCATTATTTTTTggtttgttattattttatttacacAAAGATTGCCATCTTCCCATTCACTATTAATGGGGATCCTGTGTTCTGCAAATAATGCCTGCAGTACTGTGGTTGGCCTTGAATGAGAGGGGGCAGTCATTCTCCCCTGGGTTTGTCCTGTGTAAAACCTGGTCTCGTGACTTTTAGGCTGGTTTTAGCTGTGTTTTACCAGCGCGTAACCTATTATACCAGCATTAACTCAGATTGTATCTGTGTTTCGCCTGGTTGTATCTGTGTTTTGCCTGGTTAACTGAGGACTGTAAAAACCTTTAGAAATACCTGGAAGTCCATTCACTTGTGGTCTCTAATGGTTTGTACTAAAGGTATGGGTTTAAATCCCATGTTAAATGTTTTCTTAACTTTGTAAAAGAGAATGAAAAAAAATGTCAAGAACAAAACAGGATATAAGATGTACGAATTGTTTTAATTTGGCATCTTCTTCACATTACTTTgatgttcttatttacaatgacggccaaggaacagtgggttaactgccttgttcaggggcagaacgacagatttgtaccttgtcagcacggtgattccaacgttctaaccactatttaaataaatgttatcTAGGgaagtattttgttttgtttgcttTGTTCTGTTCTATTTGTATGTGTTGAGTTTGTAAGTATGTTTTTCTGTATGTGTGCTGTACAGTGCTGGCACTGTTAATGGCTCATTAAAATTCTGCATTTCCAGGtgacaaaaatgtgctttaaa

Function

NR:

description
nuclear receptor coactivator 7-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556215.2 False 2664 mRNA 0.45 7 26897929 26903411
XM_021556222.2 True 2122 mRNA 0.43 6 26899889 26903411

Neighbor

gene id symbol gene type direction distance location
LOC110485096 LOC106605526 coding upstream 74593 26813484 ~ 26823336 (+)
rwdd1 rwdd1 coding upstream 118450 26770464 ~ 26779479 (+)
LOC110485092 LOC106605522 coding upstream 132112 26746971 ~ 26765817 (+)
LOC110485091 LOC106605521 coding upstream 156149 26738924 ~ 26741780 (+)
trnar-acg-2 NA coding upstream 256690 26641167 ~ 26641239 (+)
LOC110533712 NA coding downstream 1490 26904901 ~ 26909167 (+)
LOC110485187 LOC106605537 coding downstream 13984 26917395 ~ 26934478 (+)
LOC110485212 LOC106605536 coding downstream 244469 27147880 ~ 27175747 (+)
LOC110485224 rn146 coding downstream 275576 27178987 ~ 27182559 (+)
LOC110485466 LOC106605529 coding downstream 384761 27288172 ~ 27303644 (+)
G127200 NA non-coding upstream 34492 26861292 ~ 26863437 (+)
G127198 LOC106605538 non-coding upstream 38544 26857698 ~ 26861242 (+)
G127216 NA non-coding upstream 42800 26834107 ~ 26855129 (+)
G127211 NA non-coding upstream 67233 26830195 ~ 26830696 (+)
G127209 NA non-coding upstream 69478 26828248 ~ 26828451 (+)
G127256 NA non-coding downstream 33007 26936418 ~ 26936967 (+)
G127376 NA non-coding downstream 36261 26939672 ~ 26939929 (+)
G127381 NA non-coding downstream 38745 26942156 ~ 26942373 (+)
G127390 NA non-coding downstream 44817 26948228 ~ 26948446 (+)
G127396 NA non-coding downstream 48527 26951938 ~ 26952282 (+)
G127190 cf113 other upstream 102167 26794210 ~ 26795762 (+)
G126727 LOC106581475 other upstream 269280 26626849 ~ 26628649 (+)
G126387 LOC105417071 other upstream 847825 26049850 ~ 26050104 (+)
G125934 NA other upstream 1140076 25682880 ~ 25757853 (+)
G127644 LOC106605534 other downstream 286580 27189991 ~ 27190593 (+)
G128185 NA other downstream 813071 27716482 ~ 27717163 (+)
G128436 NA other downstream 1185236 28088647 ~ 28089445 (+)

Expression


Co-expression Network