LOC110485162 (LOC106605541)


Basic Information

Item Value
gene id LOC110485162
gene name LOC106605541
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26911398 ~ 26917150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556237.2
cactgttccaatgtaaagttcCATAGCATGGATACAATGTTGCTAACAGACACACGTTCCACAGGCTACATCAGTGTTCGTGACAAGAAGTGTTAAGGTACCAAAAATCAAATATCAGGACCAATGTCAGCTATTCATAACGGGTCGACACGGACAGAAGAAGAAAATCTCAGAATAAGCAATACATCGACTTTGACATTGTAGCAGTGACACTTGTCACCTTACCGTATAAAATGAACTATGCCTAAAAGTGGACGGACCACTTAATATGTACAAGACATCTGAGACACCACCATGGAGAACAACGATGACAGGACCGTGTGTGTGACGTCAGTGAAAGGGTTAAAGGACAACTGGCAGAGATGGTCCAACGAGCACCAGGAGTACCAGAAAGACAACCCCTTCAGTAACGACCGGGGGGCTATGGTGAGTGCGACTGCCCAGCAGCAGAGGCTCCAGCGGGACCAGGATGGCTACGGGAGGCCCCAGGAGGGCTCCTTGACAGAGCAGAGGGGCCAGGACGCCCACATCCACATCAGCCGGGAGGTGGAGGAGCTCTGCCAGGTGATCAGGGACATCGGGGAAAGCTGTGGGGacggaggcagcgaggagagacCTGTGGTGACAGTGGAGTTTGGGAAGCTGTTTGAGCACTATGTGAACATCTCCAACAAGGTGGTGGGGATCCTGCTGAGGGCCAGAAAACAAGGCCTGGTCAGCTTTGAAGGGGAGATGCTGTGGCAGGGGCAGGATGACAGGGTCCTCATCACACTGCTACAGTCACCAGGATGAGATGACAGGGTCGTCTCTATGCTGCTTCAGTGACCAGGTTAATGCAGCTGACGGACAAGTCAGTAACCaaggccctgtccagaaacatCCCCTAGCCCTTGGCTTAGGCACTCATGTACAGTAGTTGTGAAAGGATTGGCTAGGTCTAAGCAATATGATAAATTACATTAGGTAGCAAGGTGCAGCTACAACACCTATCAATTCTTTCAGATTTACACCTGCACCTAGTAGGGGtagttgtttctggacaggcccCAAGAGAACCAACCTGTGGCAGCAGTGACATGCAATATGTAGGATGAACCTGAGCCTATTGGCCTGAATGGACCTTGCGTTGCATTCCCAGTTACACCACTACACTGTAATCTACATAGCGTTTACAATGTTCCTTAGCAACCTTTGTAATTAGACACAGAGGAAAGGTGTACTTTTTAGGGCACAAataaaacacactgacactgtaGGCTTATGTTAGAAATGCTGGAAGGAGGCTATGAAACTGCATACATGGTTGACAATGTAGCAAAATGTACCACCATTTTATTTACATTCAGTAGAAATAGCACATCACTTTTTGGGCCACTGGAATTTGTGGAATTCACACTGTACTAAATTCACATTGTTCAATTTAACAAGAGTTGTTTGAGGAATGCTTTTGCAGCTACTTGCACTCATAACACAATATGATGAAATATACTCCTCATTTGAAAAATAATTATTTTGTCACCAACTAATATACTTTattccgcacacacacacacacacgtgttcatGTTTACAAAGGAAAGCACTGATGTTTTTCAATAAAGTCTTCCAACAGATCACCAAAAATGACTGTTAATTCATGATAAATTGCATTAGAATGATAGGTAACACTTTATACTTTTTATAAGGCATTGGAAAAGGGTCATAAACATTTATATCAAGTCATAAAGCCTTATAACTGCATACTTTACATTAAGTGTTACTGAATGATGTTTCCCATTAATGAGAGACCAGGAAGGAAATGTAATACCCTAGTGGAGGCAGCAATGCATCATTTATTTAACCTAACCATGAACAACCATTTACATAAATACATGTAGAGATTTTTTTACAGCAACACGTCAACCAATAAATACAAACACATGACGCTCTCAATttcatgcagcagcatacaactAAACATACATTacataaccgaaaggttgctagatcgaatccccg
>XM_021556245.2
CTATCAGTGTTTTTcactgttccaatgtaaagttcCATAGCATGGATACAATGTTGCTAACAGACACACGTTCCACAGGCTACATCAGTGTTCGTGACAAGAAGTGTTAAGAAAATGAACTATGCCTAAAAGTGGACGGACCACTTAATATGTACAAGACATCTGAGACACCACCATGGAGAACAACGATGACAGGACCGTGTGTGTGACGTCAGTGAAAGGGTTAAAGGACAACTGGCAGAGATGGTCCAACGAGCACCAGGAGTACCAGAAAGACAACCCCTTCAGTAACGACCGGGGGGCTATGGTGAGTGCGACTGCCCAGCAGCAGAGGCTCCAGCGGGACCAGGATGGCTACGGGAGGCCCCAGGAGGGCTCCTTGACAGAGCAGAGGGGCCAGGACGCCCACATCCACATCAGCCGGGAGGTGGAGGAGCTCTGCCAGGTGATCAGGGACATCGGGGAAAGCTGTGGGGacggaggcagcgaggagagacCTGTGGTGACAGTGGAGTTTGGGAAGCTGTTTGAGCACTATGTGAACATCTCCAACAAGGTGGTGGGGATCCTGCTGAGGGCCAGAAAACAAGGCCTGGTCAGCTTTGAAGGGGAGATGCTGTGGCAGGGGCAGGATGACAGGGTCCTCATCACACTGCTACAGTCACCAGGATGAGATGACAGGGTCGTCTCTATGCTGCTTCAGTGACCAGGTTAATGCAGCTGACGGACAAGTCAGTAACCaaggccctgtccagaaacatCCCCTAGCCCTTGGCTTAGGCACTCATGTACAGTAGTTGTGAAAGGATTGGCTAGGTCTAAGCAATATGATAAATTACATTAGGTAGCAAGGTGCAGCTACAACACCTATCAATTCTTTCAGATTTACACCTGCACCTAGTAGGGGtagttgtttctggacaggcccCAAGAGAACCAACCTGTGGCAGCAGTGACATGCAATATGTAGGATGAACCTGAGCCTATTGGCCTGAATGGACCTTGCGTTGCATTCCCAGTTACACCACTACACTGTAATCTACATAGCGTTTACAATGTTCCTTAGCAACCTTTGTAATTAGACACAGAGGAAAGGTGTACTTTTTAGGGCACAAataaaacacactgacactgtaGGCTTATGTTAGAAATGCTGGAAGGAGGCTATGAAACTGCATACATGGTTGACAATGTAGCAAAATGTACCACCATTTTATTTACATTCAGTAGAAATAGCACATCACTTTTTGGGCCACTGGAATTTGTGGAATTCACACTGTACTAAATTCACATTGTTCAATTTAACAAGAGTTGTTTGAGGAATGCTTTTGCAGCTACTTGCACTCATAACACAATATGATGAAATATACTCCTCATTTGAAAAATAATTATTTTGTCACCAACTAATATACTTTattccgcacacacacacacacacgtgttcatGTTTACAAAGGAAAGCACTGATGTTTTTCAATAAAGTCTTCCAACAGATCACCAAAAATGACTGTTAATTCATGATAAATTGCATTAGAATGATAGGTAACACTTTATACTTTTTATAAGGCATTGGAAAAGGGTCATAAACATTTATATCAAGTCATAAAGCCTTATAACTGCATACTTTACATTAAGTGTTACTGAATGATGTTTCCCATTAATGAGAGACCAGGAAGGAAATGTAATACCCTAGTGGAGGCAGCAATGCATCATTTATTTAACCTAACCATGAACAACCATTTACATAAATACATGTAGAGATTTTTTTACAGCAACACGTCAACCAATAAATACAAACACATGACGCTCTCAATttcatgcagcagcatacaactAAACATACATTacataaccgaaaggttgctagatcgaatccccg
>XM_021556230.2
cactgttccaatgtaaagttcCATAGCATGGATACAATGTTGCTAACAGACACACGTTCCACAGGCTACATCAGTGTTCGTGACAAGAAGTGTTAAGGTACCAAAAATCAAATATCAGGACCAATGTCAGCTATTCATAACGGGTCGACACGGACAGAAGAAGAAAATCTCAGAATAAGCAATACATCGACTTTGACATTGTAGCAGTGACACTTGTCACCTTACCAAAATGAACTATGCCTAAAAGTGGACGGACCACTTAATATGTACAAGACATCTGAGACACCACCATGGAGAACAACGATGACAGGACCGTGTGTGTGACGTCAGTGAAAGGGTTAAAGGACAACTGGCAGAGATGGTCCAACGAGCACCAGGAGTACCAGAAAGACAACCCCTTCAGTAACGACCGGGGGGCTATGGTGAGTGCGACTGCCCAGCAGCAGAGGCTCCAGCGGGACCAGGATGGCTACGGGAGGCCCCAGGAGGGCTCCTTGACAGAGCAGAGGGGCCAGGACGCCCACATCCACATCAGCCGGGAGGTGGAGGAGCTCTGCCAGGTGATCAGGGACATCGGGGAAAGCTGTGGGGacggaggcagcgaggagagacCTGTGGTGACAGTGGAGTTTGGGAAGCTGTTTGAGCACTATGTGAACATCTCCAACAAGGTGGTGGGGATCCTGCTGAGGGCCAGAAAACAAGGCCTGGTCAGCTTTGAAGGGGAGATGCTGTGGCAGGGGCAGGATGACAGGGTCCTCATCACACTGCTACAGTCACCAGGATGAGATGACAGGGTCGTCTCTATGCTGCTTCAGTGACCAGGTTAATGCAGCTGACGGACAAGTCAGTAACCaaggccctgtccagaaacatCCCCTAGCCCTTGGCTTAGGCACTCATGTACAGTAGTTGTGAAAGGATTGGCTAGGTCTAAGCAATATGATAAATTACATTAGGTAGCAAGGTGCAGCTACAACACCTATCAATTCTTTCAGATTTACACCTGCACCTAGTAGGGGtagttgtttctggacaggcccCAAGAGAACCAACCTGTGGCAGCAGTGACATGCAATATGTAGGATGAACCTGAGCCTATTGGCCTGAATGGACCTTGCGTTGCATTCCCAGTTACACCACTACACTGTAATCTACATAGCGTTTACAATGTTCCTTAGCAACCTTTGTAATTAGACACAGAGGAAAGGTGTACTTTTTAGGGCACAAataaaacacactgacactgtaGGCTTATGTTAGAAATGCTGGAAGGAGGCTATGAAACTGCATACATGGTTGACAATGTAGCAAAATGTACCACCATTTTATTTACATTCAGTAGAAATAGCACATCACTTTTTGGGCCACTGGAATTTGTGGAATTCACACTGTACTAAATTCACATTGTTCAATTTAACAAGAGTTGTTTGAGGAATGCTTTTGCAGCTACTTGCACTCATAACACAATATGATGAAATATACTCCTCATTTGAAAAATAATTATTTTGTCACCAACTAATATACTTTattccgcacacacacacacacacgtgttcatGTTTACAAAGGAAAGCACTGATGTTTTTCAATAAAGTCTTCCAACAGATCACCAAAAATGACTGTTAATTCATGATAAATTGCATTAGAATGATAGGTAACACTTTATACTTTTTATAAGGCATTGGAAAAGGGTCATAAACATTTATATCAAGTCATAAAGCCTTATAACTGCATACTTTACATTAAGTGTTACTGAATGATGTTTCCCATTAATGAGAGACCAGGAAGGAAATGTAATACCCTAGTGGAGGCAGCAATGCATCATTTATTTAACCTAACCATGAACAACCATTTACATAAATACATGTAGAGATTTTTTTACAGCAACACGTCAACCAATAAATACAAACACATGACGCTCTCAATttcatgcagcagcatacaactAAACATACATTacataaccgaaaggttgctagatcgaatccc

Function

NR:

description
actin-binding Rho-activating protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556237.2 False 1998 mRNA 0.44 2 26911398 26917136
XM_021556245.2 False 1879 mRNA 0.44 2 26911398 26917150
XM_021556230.2 True 1992 mRNA 0.44 2 26911400 26917136

Neighbor

gene id symbol gene type direction distance location
LOC110485134 LOC106605538 coding downstream 47973 26858411 ~ 26863425 (-)
LOC110485118 cndp1 coding downstream 53029 26849743 ~ 26858369 (-)
LOC110485107 LOC106605539 coding downstream 72276 26834664 ~ 26839122 (-)
LOC110534567 cf113 coding downstream 96739 26794149 ~ 26814659 (-)
LOC110485095 LOC106579313 coding downstream 124414 26781796 ~ 26786984 (-)
LOC110485234 LOC106605534 coding upstream 267360 27184510 ~ 27202253 (-)
LOC110485460 LOC106605533 coding upstream 286040 27203190 ~ 27215402 (-)
LOC110485403 NA coding upstream 298822 27215972 ~ 27231128 (-)
LOC110485245 ubr5 coding upstream 314388 27231538 ~ 27278158 (-)
LOC110485483 LOC106605528 coding upstream 391364 27308514 ~ 27317719 (-)
G127323 NA non-coding downstream 7999 26902023 ~ 26903399 (-)
G127313 NA non-coding downstream 56944 26833172 ~ 26854454 (-)
G127307 NA non-coding downstream 88799 26820766 ~ 26822599 (-)
G127268 NA non-coding downstream 173619 26736841 ~ 26737779 (-)
G127131 NA non-coding downstream 226760 26684168 ~ 26684638 (-)
G127372 NA non-coding upstream 18322 26935472 ~ 26935844 (-)
G127382 NA non-coding upstream 25613 26942763 ~ 26943032 (-)
G127391 NA non-coding upstream 31398 26948548 ~ 26948780 (-)
G127434 NA non-coding upstream 68787 26985937 ~ 26986228 (-)
G127475 NA non-coding upstream 100656 27017806 ~ 27018062 (-)
LOC110539285 LOC106579350 other downstream 248384 26641958 ~ 26675649 (-)
G127083 NA other downstream 349271 26561614 ~ 26562127 (-)
G125305 NA other downstream 2134771 24775220 ~ 24776627 (-)
LOC110538887 LOC106605647 other downstream 2376869 24531424 ~ 24540898 (-)
G125043 NA other downstream 2586562 24324580 ~ 24324836 (-)
G129250 NA other upstream 849007 27766157 ~ 27766532 (-)
LOC110485663 LOC106579570 other upstream 1179532 27933389 ~ 28149986 (-)
G129582 NA other upstream 1393169 28310319 ~ 28310732 (-)
LOC110534614 LOC106605399 other upstream 1560036 28475823 ~ 28533709 (-)

Expression


Co-expression Network