LOC110485187 (LOC106605537)


Basic Information

Item Value
gene id LOC110485187
gene name LOC106605537
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 26917395 ~ 26934478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943780.1
acaaaacaaaaacatacacATCTTAATTTTGCTTTGACAAAATACATGCATTTAATGCACAATCATTGCTGTTAAAGTGGTATTTATTTTGAAACAGACAGGAACCACTATTCGCGGGGACGCAGTTTTAAGCCGGGTGTATTTTGCGTAAGAACTCGAACATGGCGATCCACTGTAGCAGAATATGCCTGCAATATTTGATACATCTGGCCCACGACAATGTTGACTTCAGGCTACCGGAGATTAGGTCGCTGCTGTCCCTCAGGGGCAAACCGTTTGATCCAGGTGAAAACTTTAAAGAAAAGTCTCCATTCTGGCTCCTGAATGGCTTGTCAGAGGAAGATGTCAACAGCATCATGGCCAGAACTGTTTGTGCAAAGTCTGCATTTGAGCTGTGGGGCCATGGCAGAACGCACAGTGAACTCAGGAACTCGCTCTTGAAATATCCAACAGAGAACATGTCACCCTTCCTACAGAAAGACTCAACATACAAAATCAATGTCTACACTTTCAACAAGACTCTAGAGTTCGAAGATAGAATTAAGAAGATAGATGCAATGGAATATCTCTCATTCGAGGGAAGGGTCAATCTACGGAACCCTAAACACATCTTCTGTCTGTTGGAGGACTATGGAACTGACCCTAACGACATCCCAGACGAGCCCCTCTACATCTACTTTGGGAGATGGATTGCAGATGGCCAGCGTGAGTTGATTCGCTCTCACAGTGTGAAGAACAGGCACTTCATAGGTAACACCAGTATGGACGCTGGGTTGTCTTTTATCATGGCCAACCACGCCAGTGTCAAGGCTCACGACCTGGTCTACGACCCCTTCGTTGGGACTGgTAGCCTCCTGGTTGCATGCTCTCATTTTGGTGCATATGTCTGTGGAACGGATATTGATTACAACACCATCCATGGGATAGGAAAAGCGAGTCGTAAGAACCAGAAGTGGAGGGGTCCAGATGAGAACATCAGAGCCAACCTGCGTCAGTACGGCTCAGAGAAGCTGTATGTGGACGTCCTTGTGTCTGACGCCTCCAAGCCTATCTGGAGGGACGGAGTGCTCTTTGACGCCATCATCACTGACCCCCCCTATGGGATTCGGGAGTCAACCAGGAGAACAGGCTCTCAGAAGGACAGTGTAAACAGTGTGAAGCCATCTGAAGACTACGTTGGAGACAGCCATGTCCCCGTTTCCATGGCCTACCACCTGAGTGACATATTCACTGACCTGTTAAACTTCTCAGCTCAACACCTGGTCATCGGAGGGCGGCTAGTCTACTGGCTACCAATCTACAGGCCAGAgtacTGTGAAGAGATGGTGCCCCTGAATGCCTGTCTCAGACTGGTCAGTAACTGTGAACAGACCCTTTCCAGCCACACCTCCAGACGTCTCATCACCATGGAGAAGATCAAGGAACCAGAGTCTCCTCCTGGCAGGCTGTATCCAGCAATGCTGCTCAACCCAGTCTTCAAAGGCTTCTGCTTTAGAGGCTGTAATGcaggcttgactactgtaatgctatTCTGTCGGGTCTActcaagaaagccattggtcaactgcaaaacatgcagaatgctgcagcacgggtactgCCCAAGACCAGATGAAGAGCGcacattacaccggttttaaaGTCTCTGcgctggctgcctTTATgtgtccctcaggtcctctggcgcTGGCCTTTTAACTGTCCCAAAGCTTAGGACGAagactatgcccccagcctctggaatagcctgccagaaaACCTGAGGGGGGCTGAAACTGGACATATTTAAAAGGGATCTTAAAACACACATTTTCAGCTCTGCTTTTCCTTAGTGTGCTTTTTAGTCTTTCAGTTTGTATTGTTATTCCTTTGTTTTCTATCCTCAAATTTTTGGTCAtttataaaaataataaaactgaaatattacattttagaaaagtattcagaccctttactcag
>XM_036943774.1
acaaaacaaaaacatacacATCTTAATTTTGCTTTGACAAAATACATGCATTTAATGCACAATCATTGCTGTTAAAGTGGTATTTATTTTGAAACAGACAGGAACCACTATTCGCGGGGACGCAGTTTTAAGCCGGGTGTATTTTGCGTAAGAACTCGAACATGGCGATCCACTGTAGCAGAATATGCCTGCAATATTTGATACATCTGGCCCACGACAATGTTGACTTCAGGCTACCGGAGATTAGGTCGCTGCTGTCCCTCAGGGGCAAACCGTTTGATCCAGGTGAAAACTTTAAAGAAAAGTCTCCATTCTGGCTCCTGAATGGCTTGTCAGAGGAAGATGTCAACAGCATCATGGCCAGAACTGTTTGTGCAAAGTCTGCATTTGAGCTGTGGGGCCATGGCAGAACGCACAGTGAACTCAGGAACTCGCTCTTGAAATATCCAACAGAGAACATGTCACCCTTCCTACAGAAAGACTCAACATACAAAATCAATGTCTACACTTTCAACAAGACTCTAGAGTTCGAAGATAGAATTAAGAAGATAGATGCAATGGAATATCTCTCATTCGAGGGAAGGGTCAATCTACGGAACCCTAAACACATCTTCTGTCTGTTGGAGGACTATGGAACTGACCCTAACGACATCCCAGACGAGCCCCTCTACATCTACTTTGGGAGATGGATTGCAGATGGCCAGCGTGAGTTGATTCGCTCTCACAGTGTGAAGAACAGGCACTTCATAGGTAACACCAGTATGGACGCTGGGTTGTCTTTTATCATGGCCAACCACGCCAGTGTCAAGGCTCACGACCTGGTCTACGACCCCTTCGTTGGGACTGgTAGCCTCCTGGTTGCATGCTCTCATTTTGGTGCATATGTCTGTGGAACGGATATTGATTACAACACCATCCATGGGATAGGAAAAGCGAGTCGTAAGAACCAGAAGTGGAGGGGTCCAGATGAGAACATCAGAGCCAACCTGCGTCAGTACGGCTCAGAGAAGCTGTATGTGGACGTCCTTGTGTCTGACGCCTCCAAGCCTATCTGGAGGGACGGAGTGCTCTTTGACGCCATCATCACTGACCCCCCCTATGGGATTCGGGAGTCAACCAGGAGAACAGGCTCTCAGAAGGACAGTGTAAACAGTGTGAAGCCATCTGAAGACTACGTTGGAGACAGCCATGTCCCCGTTTCCATGGCCTACCACCTGAGTGACATATTCACTGACCTGTTAAACTTCTCAGCTCAACACCTGGTCATCGGAGGGCGGCTAGTCTACTGGCTACCAATCTACAGGCCAGAgtacTGTGAAGAGATGGTGCCCCTGAATGCCTGTCTCAGACTGGTCAGTAACTGTGAACAGACCCTTTCCAGCCACACCTCCAGACGTCTCATCACCATGGAGAAGATCAAGGAACCAGAGTCTCCTCCTGGCAGGCTGTATCCAGCAATGCTGCTCAACCCAGTCTTCAAAGGCTTCTGCTTTAGAGGCTGTAATGcaggcttgactactgtaatgctatTCTGTCGGGTCTActcaagaaagccattggtcaactgcaaaacatgcagaatgctgcagcacgggtactgCCCAAGACCAGATGAAGAGCGcacattacaccggttttaaaGTCTCTGcgctggctgcctgagaCAGATGCGCTGGCCCACCTGTCAGACCCTCACTTTAGCCCGTACCAAGGCCACAACGCCTTCAGGGAAAAGTACTTCAGCGGCATCAGCAAGAGGACATTGACAGGAAAGGAGGAGACCAACAAGATGGCCGCCAACGGTGGGGAGTGATGTAAGAATCACAGGATGGCCCAATT
>XM_036943786.1
caaaacaaaaacatacacATCTTAATTTTGCTTTGACAAAATACATGCATTTAATGCACAATCATTGCTGTTAAAGTGGTATTTATTTTGAAACAGACAGGAACCACTATTCGCGGGGACGCAGTTTTAAGCCGGGTGTATTTTGCGTAAGAACTCGAACATGGCGATCCACTGTAGCAGAATATGCCTGCAATATTTGATACATCTGGCCCACGACAATGTTGACTTCAGGCTACCGGAGATTAGGTCGCTGCTGTCCCTCAGGGGCAAACCGTTTGATCCAGGTGAAAACTTTAAAGAAAAGTCTCCATTCTGGCTCCTGAATGGCTTGTCAGAGGAAGATGTCAACAGCATCATGGCCAGAACTGTTTGTGCAAAGTCTGCATTTGAGCTGTGGGGCCATGGCAGAACGCACAGTGAACTCAGGAACTCGCTCTTGAAATATCCAACAGAGAACATGTCACCCTTCCTACAGAAAGACTCAACATACAAAATCAATGTCTACACTTTCAACAAGACTCTAGAGTTCGAAGATAGAATTAAGAAGATAGATGCAATGGAATATCTCTCATTCGAGGGAAGGGTCAATCTACGGAACCCTAAACACATCTTCTGTCTGTTGGAGGACTATGGAACTGACCCTAACGACATCCCAGACGAGCCCCTCTACATCTACTTTGGGAGATGGATTGCAGATGGCCAGCGTGAGTTGATTCGCTCTCACAGTGTGAAGAACAGGCACTTCATAGGTAACACCAGTATGGACGCTGGGTTGTCTTTTATCATGGCCAACCACGCCAGTGTCAAGGCTCACGACCTGGTCTACGACCCCTTCGTTGGGACTGgTAGCCTCCTGGTTGCATGCTCTCATTTTGGTGCATATGTCTGTGGAACGGATATTGATTACAACACCATCCATGGGATAGGAAAAGCGAGTCGTAAGAACCAGAAGTGGAGGGGTCCAGATGAGAACATCAGAGCCAACCTGCGTCAGTACGGCTCAGAGAAGCTGTATGTGGACGTCCTTGTGTCTGACGCCTCCAAGCCTATCTGGAGGGACGGAGTGCTCTTTGACGCCATCATCACTGACCCCCCCTATGGGATTCGGGAGTCAACCAGGAGAACAGGCTCTCAGAAGGACAGTGTAAACAGTGTGAAGCCATCTGAAGACTACGTTGGAGACAGCCATGTCCCCGTTTCCATGGCCTACCACCTGAGTGACATATTCACTGACCTGTTAAACTTCTCAGCTCAACACCTGGTCATCGGAGGGCGGCTAGTCTACTGGCTACCAATCTACAGGCCAGAgtacTGTGAAGAGATGGTGCCCCTGAATGCCTGTCTCAGACTGGTCAGTAACTGTGAACAGACCCTTTCCAGCCACACCTCCAGACGTCTCATCACCATGGAGAAGATCAAGGAACCAGAGTCTCCTCCTGGCAGGCTGTATCCAGCAATGCTGCTCAACCCAGTCTTCAAAGGCTTCTGCTTTAGAGGCTGTAATGgcttgactactgtaatgctatTCTGTCGGGTCTActcaagaaagccattggtcaactgcaaaacatgcagaatgctgcagcacgggtactgCCCAAGACCAGATGAAGAGCGcacattacaccggttttaaaGTCTCTGcgctggctgcctgagaCAGATGCGCTGGCCCACCTGTCAGACCCTCACTTTAGCCCGTACCAAGGCCACAACGCCTTCAGGGAAAAGTACTTCAGCGGCATCAGCAAGAGGACATTGACAGGAAAGGAGGAGACCAACAAGATGGCCGCCAACGGTGGGGAGTGATGTAAGAATCACAGGATGGCCCAATT
>XM_021556256.2
TATTTTGAAACAGACAGGAACCACTATTCGCGGGGACGCAGTTTTAAGCCGGGTGTATTTTGCGTAAGAACTCGAACATGGCGATCCACTGTAGCAGAATATGCCTGCAATATTTGATACATCTGGCCCACGACAATGTTGACTTCAGGCTACCGGAGATTAGGTCGCTGCTGTCCCTCAGGGGCAAACCGTTTGATCCAGGTGAAAACTTTAAAGAAAAGTCTCCATTCTGGCTCCTGAATGGCTTGTCAGAGGAAGATGTCAACAGCATCATGGCCAGAACTGTTTGTGCAAAGTCTGCATTTGAGCTGTGGGGCCATGGCAGAACGCACAGTGAACTCAGGAACTCGCTCTTGAAATATCCAACAGAGAACATGTCACCCTTCCTACAGAAAGACTCAACATACAAAATCAATGTCTACACTTTCAACAAGACTCTAGAGTTCGAAGATAGAATTAAGAAGATAGATGCAATGGAATATCTCTCATTCGAGGGAAGGGTCAATCTACGGAACCCTAAACACATCTTCTGTCTGTTGGAGGACTATGGAACTGACCCTAACGACATCCCAGACGAGCCCCTCTACATCTACTTTGGGAGATGGATTGCAGATGGCCAGCGTGAGTTGATTCGCTCTCACAGTGTGAAGAACAGGCACTTCATAGGTAACACCAGTATGGACGCTGGGTTGTCTTTTATCATGGCCAACCACGCCAGTGTCAAGGCTCACGACCTGGTCTACGACCCCTTCGTTGGGACTGgTAGCCTCCTGGTTGCATGCTCTCATTTTGGTGCATATGTCTGTGGAACGGATATTGATTACAACACCATCCATGGGATAGGAAAAGCGAGTCGTAAGAACCAGAAGTGGAGGGGTCCAGATGAGAACATCAGAGCCAACCTGCGTCAGTACGGCTCAGAGAAGCTGTATGTGGACGTCCTTGTGTCTGACGCCTCCAAGCCTATCTGGAGGGACGGAGTGCTCTTTGACGCCATCATCACTGACCCCCCCTATGGGATTCGGGAGTCAACCAGGAGAACAGGCTCTCAGAAGGACAGTGTAAACAGTGTGAAGCCATCTGAAGACTACGTTGGAGACAGCCATGTCCCCGTTTCCATGGCCTACCACCTGAGTGACATATTCACTGACCTGTTAAACTTCTCAGCTCAACACCTGGTCATCGGAGGGCGGCTAGTCTACTGGCTACCAATCTACAGGCCAGAgtacTGTGAAGAGATGGTGCCCCTGAATGCCTGTCTCAGACTGGTCAGTAACTGTGAACAGACCCTTTCCAGCCACACCTCCAGACGTCTCATCACCATGGAGAAGATCAAGGAACCAGAGgagaCAGATGCGCTGGCCCACCTGTCAGACCCTCACTTTAGCCCGTACCAAGGCCACAACGCCTTCAGGGAAAAGTACTTCAGCGGCATCAGCAAGAGGACATTGACAGGAAAGGAGGAGACCAACAAGATGGCCGCCAACGGTGGGGAGTGATGTAAGAATCACAGGATGGCCCAATTCCAAATGGACCCCTAAGCCAGTATGCAATTGTGCAGAGGATTTGAAAGGTGCAATCAATATGGTAATAACTCCACCTTGCTGTTTGATAGGCTAGATGGAAGTTTCACCATATTGCATATACAAATCGAATTCTCACAGATCTGCACAAGTGCATTAGCTGAAGGTTCTAGGGCTCCATTTAGGATTGGGCCGATACCTGACTATGGTTTACAATGGACTCCATGGGGACATAGGGCTCCCTGTTTTAAATGTCTTATTTTctattcaaatatgttttttattGTTTGATGTTTATTGCCCTTTGTGTAATAATGAATGTGAATTGTGAACGAATAAAcaccattttaaaatgta

Function

NR:

description
tRNA (guanine(10)-N2)-methyltransferase homolog isoform X1

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K15430 TRM11, TRMT11; tRNA (guanine10-N2)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943780.1 False 1959 mRNA 0.47 15 26917395 26931359
XM_036943774.1 False 1839 mRNA 0.49 15 26917395 26934123
XM_036943786.1 False 1835 mRNA 0.49 15 26917396 26934123
XM_021556256.2 True 1880 mRNA 0.48 13 26917479 26934478

Neighbor

gene id symbol gene type direction distance location
LOC110533712 NA coding upstream 8228 26904901 ~ 26909167 (+)
LOC110485145 LOC106579269 coding upstream 13984 26897929 ~ 26903411 (+)
LOC110485096 LOC106605526 coding upstream 94059 26813484 ~ 26823336 (+)
rwdd1 rwdd1 coding upstream 137916 26770464 ~ 26779479 (+)
LOC110485092 LOC106605522 coding upstream 151578 26746971 ~ 26765817 (+)
LOC110485212 LOC106605536 coding downstream 213402 27147880 ~ 27175747 (+)
LOC110485224 rn146 coding downstream 244509 27178987 ~ 27182559 (+)
LOC110485466 LOC106605529 coding downstream 353694 27288172 ~ 27303644 (+)
LOC110485500 LOC106579140 coding downstream 387072 27321550 ~ 27331169 (+)
LOC110485507 LOC106579115 coding downstream 397219 27331697 ~ 27380409 (+)
G127200 NA non-coding upstream 53958 26861292 ~ 26863437 (+)
G127198 LOC106605538 non-coding upstream 58010 26857698 ~ 26861242 (+)
G127216 NA non-coding upstream 62266 26834107 ~ 26855129 (+)
G127211 NA non-coding upstream 86699 26830195 ~ 26830696 (+)
G127209 NA non-coding upstream 88944 26828248 ~ 26828451 (+)
G127256 NA non-coding downstream 1940 26936418 ~ 26936967 (+)
G127376 NA non-coding downstream 5194 26939672 ~ 26939929 (+)
G127381 NA non-coding downstream 7678 26942156 ~ 26942373 (+)
G127390 NA non-coding downstream 13750 26948228 ~ 26948446 (+)
G127396 NA non-coding downstream 17460 26951938 ~ 26952282 (+)
G127190 cf113 other upstream 121633 26794210 ~ 26795762 (+)
G126727 LOC106581475 other upstream 288746 26626849 ~ 26628649 (+)
G126387 LOC105417071 other upstream 867291 26049850 ~ 26050104 (+)
G125934 NA other upstream 1159542 25682880 ~ 25757853 (+)
G127644 LOC106605534 other downstream 255513 27189991 ~ 27190593 (+)
G128185 NA other downstream 782004 27716482 ~ 27717163 (+)
G128436 NA other downstream 1154169 28088647 ~ 28089445 (+)

Expression


Co-expression Network