LOC110485212 (LOC106605536)


Basic Information

Item Value
gene id LOC110485212
gene name LOC106605536
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 27147880 ~ 27175747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021556276.2
TCATAAGAGAGTGAGTTGGAGTGGGGGAATGAGTATTGCACGCAAAACTGAAAAGAGCTGAAACTGCGCATATTATTTTTGCTTTAACTGTCGACCAATGAGAGGTGCGCGACAATCAAGAGAACCAACACATTCTCACCTCATCGAAACGTGTTACTTTATTACAGTTAGGTGCTGCTGCTGCCAGTGACGCGCGCGGCTCCCAGTTTTGGTCTAATCGATTAGATGATGGGGATGACGCGATGACCTCCTCCTACACGCAGGGCACAATAAAGTAGCCCTCACACCTGGACGTGCGGCGAACTTCGAGAGAGTATCAGTGGAGGATACAGGAAGACAACTGAAACTGTATCAATATGCCAGCCTCGATTATATGATCTACGCTTTCTTTCTTTTAGTATTTTACTTTTCCCGCGGTGGGTGATAATCTAACGGTTTGATTGTGGGAATATGCTCACTACGGATACCTGATTTGGTCTCGCTTTGTGGCACACATGAAGATTCTATTAAGGATGTTACTGTCTAAACGGCCCAGGTGTCATTGGGCCATCGTAAAACAGACATCACTCTCTGCGCAGAGCAGGGGATTCTGCTCTTTCCAGGAATAAGACAACACATTCCCTCTCAAAAAAGTGGAATCAAAGCTGCACTTTTCTGGAGGACATTGACATTGGCTATTCAAGTCATCATCTCCGGGTTACTATGCAATTACAACTGATCTACTTTGTTTTGATCTTGCACTGCATGGAATACACTGATTGTCAGCAGCACCCCTCTAGGCATCGGCAAAATAAACAGAACCAAGGGGTAAGCTCAGGGTGCCAGGGAGGCTGTCTGACCTGCTCTGATTACAATGGCTGTCTGTCCTGTAAGCCCCGCCTCTTTATCTTCCTGGAGAGAAATGGGATGAGGCAGATGGGGGTGTGTCTGCCCTCCTGCCCCAGTGGTTTCTACGGCACCCGCTCACCAGACAGAAACACATGCACAAAGTGCAGGCCGGAGTGTGATTCTTGCTTCAATAAGAACCTTTGCATGCGGTGCCGAGCGGGGTACTATCTCCACCTGGGCAAGTGCCAGGAGAGCTGCCCAGAGAGCCTGGTCTGCAGCGACACACAAAGGGAATGTGTTCCCAAGTGTCCTGCGGACTGTGATGCCTGTCTGATCAATGACACATGTACAAGGTGCAGACCAGGCCTGTACTTGCTGCTGGGGAAGTGTCACCACGTCTGTCCAGACGAGTTTGAACCAAATGACAAACTCATGGAGTGTTCCCTTCAAGTGCACTGCGCGGTGGGTGAGTGGGGCGAGTGGAGCCCCTGCTCCCGGTCAGGGAAAACCTGTGGATTTAAATGGGGTGAGGAGACGAGGACCCGGGAAGTTGTCCAGTTCCCTTCCGCCTACGGAAAACTCTGTCCCCCCATCTGGGAAAAGAAAGAGTGTGTCCTCAAGAGGAGGCGATGTCCAGGGCAAGGCAAGGGGAGGAAGGGTGAGCGGCGGGGCGAAAGGAGAAATCGGGACAACCGCCGGGACAAGGACAGCCAGGGGGAAGGCCGGCGGGAGAggaagaaggacagagagagggagaggggggaggcaggtgaCCGGGAGGACTctgagaacaggaacaagacagaGCAAAGACGCCGGAGAGGCCAAAACAGAGACCCTGTTGTCTCACCTGAGGGAGGAGGTCCTGAACAGTAACAGAGCCTGGAGGAGCCCTCTCACTCCACCCCCTCTTTGTCACCCTCGCCCCCTCAACTCCTTGCTGATGGGGTTCTGCTGCTACCTGTATTatttaaatatatactgtatatgcacaAGAGAGATGGGGTCACTCGATCGGGCCACTACAGACTCTAAGGACTTCTCCcctacatacctacctacctaccctcctccaccacacaCCACTGAGAGGCCGCCTCCcccttcctgtcctgtcctctagtttcaccagaccagagagaaCCAAGACTGCTGTTGATTGGACGGGAATGTACAAAACTGCTCTTGTGATTAGATGGGACTgtacagagaggagagcagtgaGACATTGAAATGTGACAGTATGGGGATGATGATGTGTTTGTCATTGGGAGTCGGGACAATGTAAATGCTTGTTGAATCGGTTATTTAAAAGGCTCCCACCCAGTTAAAAACAAACTTTGTGTCTTGGTTTCAATGTAGGTTTAATTTGTGACATTATGTagaattgttgttgttgtttaaatgtatttttgtttttgtttgttgttttttgctGAGTAAATTATCATGGGATATCAgtaacagaaagacagacagtcaGATGTGGTTACTGCATCCAGATGTATAGTAAACATGAGACAAACCGACTGAATTGATTTTGTGACAGAATGAGGACGGACCTCAGTGTTTTCCTCACAACTTATTATTGGTCATGTTTGTTCAGAAGCGTCCTGGACAAAGTGCTAGTTTGCCTATCTGTGTAAGCGGGATTTGTGCTTTCACTAAAGCCACCTGAGCAGAAATCAAAAGCATCTGTATGTCAAATAAACTATAATGGGTTT
>TU147247
CGGCGAACTTCGAGAGAGTATCAGTGGAGGATACAGGAAGACAACTGAAACTGTATCAATATGCCAGCCTCGATTATATGATCTACGCTTTCTTTCTTTTAGTATTTTACTTTTCCCGCGGTGGGTGATAATCTAACGGTTTGATTGTGGGAATATGCTCACTACGGATACCTGATTTGGTCTCGCTTTGTGGCACACATGAAGATTCTATTAAGGATGTTACTGTCTAAACGGCCCAGGTGTCATTGGGCCATCGTAAAACAGACATCACTCTCTGCGCAGAGCAGGGGATTCTGCTCTTTCCAGGAATAAGACAACACATTCCCTCTCAAAAAAGTGGAATCAAAGCTGCACTTTTCTGGAGGACATTGACATTGGCTATTCAAGTCATCATCTCCGGGTTACTATGCAATTACAACTGATCTACTTTGTTTTGATCTTGCACTGCATGGAATACACTGATTGTCAGCAGCACCCCTCTAGGCATCGGCAAAATAAACAGAACCAAGGGGTAAGCTCAGGGTGCCAGGGAGGCTGTCTGACCTGCTCTGATTACAATGGCTGTCTGTCCTGTAAGCCCCGCCTCTTTATCTTCCTGGAGAGAAATGGGATGAGGCAGATGGGGGTGTGTCTGCCCTCCTGCCCCAGTGGTTTCTACGGCACCCGCTCACCAGACAGAAACACATGCACAAAGTGCAGGCCGGAGTGTGATTCTTGCTTCAATAAGAACCTTTGCATGCGGTGCCGAGCGGGGTACTATCTCCACCTGGGCAAGTGCCAGGAGAGCTGCCCAGAGAGCCTGGTCTGCAGCGACACACAAAGGGAATGTGTTCCCAAGTGTCCTGCGGACTGTGATGCCTGTCTGATCAATGACACATGTACAAGGTGCAGACCAGGCCTGTACTTGCTGCTGGGGAAGTGTCACCACGTCTGTCCAGACGAGTTTGAACCAAATGACAAACTCATGGAGTGTTCCCTTCAAGTGCACTGCGCGGTGGGTGAGTGGGGCGAGTGGAGCCCCTGCTCCCGGTCAGGGAAAACCTGTGGATTTAAATGGGGTGAGGAGACGAGGACCCGGGAAGTTGTCCAGTTCCCTTCCGCCTACGGAAAACTCTGTCCCCCCATCTGGGAAAAGAAAGAGTGTGTCCTCAAGAGGAGGCGATGTCCAGG

Function

NR:

description
R-spondin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021556276.2 False 2552 mRNA 0.49 6 27147880 27175747
TU147247 True 1170 TUCP 0.42 5 27148176 27160645

Neighbor

gene id symbol gene type direction distance location
LOC110485187 LOC106605537 coding upstream 213402 26917395 ~ 26934478 (+)
LOC110533712 NA coding upstream 238713 26904901 ~ 26909167 (+)
LOC110485145 LOC106579269 coding upstream 244469 26897929 ~ 26903411 (+)
LOC110485096 LOC106605526 coding upstream 324544 26813484 ~ 26823336 (+)
rwdd1 rwdd1 coding upstream 368401 26770464 ~ 26779479 (+)
LOC110485224 rn146 coding downstream 3240 27178987 ~ 27182559 (+)
LOC110485466 LOC106605529 coding downstream 112425 27288172 ~ 27303644 (+)
LOC110485500 LOC106579140 coding downstream 145803 27321550 ~ 27331169 (+)
LOC110485507 LOC106579115 coding downstream 155950 27331697 ~ 27380409 (+)
LOC110485543 LOC106579099 coding downstream 214843 27390590 ~ 27403425 (+)
G127608 NA non-coding upstream 6370 27141213 ~ 27141510 (+)
G127571 NA non-coding upstream 35367 27112208 ~ 27112513 (+)
G127517 NA non-coding upstream 93029 27054632 ~ 27054851 (+)
G127513 NA non-coding upstream 97211 27050337 ~ 27050669 (+)
G127503 NA non-coding upstream 103146 27044496 ~ 27044734 (+)
G127702 ubr5 non-coding downstream 94386 27270133 ~ 27270723 (+)
G127709 NA non-coding downstream 104771 27280518 ~ 27280720 (+)
G127712 NA non-coding downstream 107643 27283390 ~ 27283688 (+)
G127697 LOC106605528 non-coding downstream 132781 27308528 ~ 27310040 (+)
G127699 LOC106605528 non-coding downstream 134820 27310567 ~ 27312496 (+)
G127198 LOC106605538 other upstream 286638 26857698 ~ 26861242 (+)
G127190 cf113 other upstream 352118 26794210 ~ 26795762 (+)
G126727 LOC106581475 other upstream 519231 26626849 ~ 26628649 (+)
G126387 LOC105417071 other upstream 1097776 26049850 ~ 26050104 (+)
G125934 NA other upstream 1390027 25682880 ~ 25757853 (+)
G127644 LOC106605534 other downstream 14244 27189991 ~ 27190593 (+)
G128185 NA other downstream 540735 27716482 ~ 27717163 (+)
G128436 NA other downstream 912900 28088647 ~ 28089445 (+)
G128490 NA other downstream 1075095 28250842 ~ 28547915 (+)

Expression


Co-expression Network